Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

14178083 .. 14179099

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G161200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTGGTGTCTTTCTCAGAAGTTAGAAGAGAATAATGCAAACCTTTGCATAGCTAAGCATGTTATTAACAAGCATTTATGGCATGCACCTGAAGAAAAATTAAAAATGATAATGATTTCTTATGAATCCAAGGGCAGGGGTTCCACCGTAGCTAGTAGCCACGTACTGTTTGATGCAAGATCCAAGGGGCTATCTTCCGAGAATAAGAATCTACCATGCGGGGCATTCTGGTTAGATGAGGATCAATTCAGCTCGTCAGGACTCTTTCAATTGGAGTTCTTATTGAAAGCAGTGTGGCTCATGACTGTTGATCAACTCCTTGCAGGTTCTGGAACTTTTATGCAGTTTGAACGCAACCATTGTTGGCTTGGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

126

Amino Acids

14.19

Weight (kDa)

6.5

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	2 cut(s)	174, 249
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	269, 286, 350
AluBI	AGCT	3 cut(s)	53, 152, 252
AluI	AGCT	3 cut(s)	53, 152, 252
AlwI	GGATC	2 cut(s)	174, 249
AlwNI	CAGNNNCTG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	310
BfaI	CTAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	314
BlpI	GCTNAGC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	129, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	129, 183
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	179, 241, 310
Bsp1720I	GCTNAGC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	174, 249
BssECI	CCNNGG	2 cut(s)	129, 183
BssMI	GATC	3 cut(s)	179, 241, 310
BssT1I	CCWWGG	2 cut(s)	129, 183
Bst4CI	ACNGT	3 cut(s)	148, 168, 307
Bst6I	CTCTTC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	15, 54
BstKTI	GATC	3 cut(s)	182, 244, 313
BstMBI	GATC	3 cut(s)	179, 241, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNSI	RCATGY	2 cut(s)	62, 86
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	4 cut(s)	59, 83, 216, 301
CviJI	RGCY	7 cut(s)	53, 152, 159, 190, 252, 298, 367
CviKI_1	RGCY	7 cut(s)	53, 152, 159, 190, 252, 298, 367
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	15, 54
DpnI	GATC	3 cut(s)	181, 243, 312
DpnII	GATC	3 cut(s)	179, 241, 310
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	129, 183
Eco57I	CTGAAG	1 cut(s)	111
EcoT14I	CCWWGG	2 cut(s)	129, 183
ErhI	CCWWGG	2 cut(s)	129, 183
FaeI	CATG	4 cut(s)	62, 86, 219, 304
FaiI	YATR	8 cut(s)	50, 60, 79, 84, 123, 217, 302, 341
FatI	CATG	4 cut(s)	58, 82, 215, 300
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	310
FspBI	CTAG	1 cut(s)	153
Hin1II	CATG	4 cut(s)	62, 86, 219, 304
HinfI	GANTC	3 cut(s)	125, 208, 261
Hpy188I	TCNGA	2 cut(s)	18, 199
Hpy188III	TCNNGA	3 cut(s)	258, 301, 330
HpyCH4III	ACNGT	3 cut(s)	148, 168, 307
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	6 cut(s)	38, 48, 86, 176, 323, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	15, 54
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	62, 86, 219, 304
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	179, 241, 310
LpnPI	CCDG	6 cut(s)	102, 121, 214, 243, 309, 315
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	162
MalI	GATC	3 cut(s)	181, 243, 312
MboI	GATC	3 cut(s)	179, 241, 310
MboII	GAAGA	3 cut(s)	38, 104, 186
MfeI	CAATTG	1 cut(s)	269
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	3 cut(s)	98, 245, 269
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	1 cut(s)	232
MseI	TTAA	2 cut(s)	66, 101
MunI	CAATTG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	3 cut(s)	179, 241, 310
NlaIII	CATG	4 cut(s)	62, 86, 219, 304
NlaIV	GGNNCC	1 cut(s)	142
NspI	RCATGY	2 cut(s)	62, 86
PaeI	GCATGC	1 cut(s)	86
PagI	TCATGA	1 cut(s)	300
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	125, 208
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	66, 101
Sau3AI	GATC	3 cut(s)	179, 241, 310
SchI	GAGTC	1 cut(s)	255
SetI	ASST	7 cut(s)	45, 55, 91, 154, 165, 254, 328
SfaNI	GCATC	1 cut(s)	163
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	3 cut(s)	98, 245, 269
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	1 cut(s)	153
StyI	CCWWGG	2 cut(s)	129, 183
TaaI	ACNGT	3 cut(s)	148, 168, 307
TaiI	ACGT	1 cut(s)	165
TasI	AATT	3 cut(s)	98, 245, 269
TfiI	GAWTC	2 cut(s)	125, 208
Tru1I	TTAA	2 cut(s)	66, 101
Tru9I	TTAA	2 cut(s)	66, 101
TscAI	CASTG	1 cut(s)	297
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	297
XceI	RCATGY	2 cut(s)	62, 86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.