Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8044072.1

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 543

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8044072.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

tgcttttcaagtaacttgaacatttctacaatcaaagaacttgctaatgctttggcatctcaccctccttatgaagttccaatatctagcattaagattaggcatctccattgtcaggtcccaggtactgagatcttctatagtttgaatggaagcattgttggcttggcagttagcactgaaggctcaaaagatttaccatggtgtgttggtcttggtaagttacttttgcaacttattgctgccagatttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

85

Amino Acids

9.15

Weight (kDa)

7.95

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	9, 19, 148
AjnI	CCWGG	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	123
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	139
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	65, 112
BsaJI	CCNNGG	2 cut(s)	121, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	121, 200
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	121, 200
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	200
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 183
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	2 cut(s)	165, 186
CviKI_1	RGCY	2 cut(s)	165, 186
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	1 cut(s)	204
FaiI	YATR	3 cut(s)	72, 141, 202
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 183
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	132
LpnPI	CCDG	3 cut(s)	101, 108, 135
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	65, 112
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	11, 222
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	132
MnlI	CCTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	162, 183
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	2 cut(s)	120, 127
SfaNI	GCATC	2 cut(s)	65, 112
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	118
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.