Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

32194068 .. 32198143

Gene Structure 4076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1183600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCCTCGCCGTCAGGACCCGAAACTCCGTCGCCGAACATCTACATACCGCCGGAGTGGTCCGAGGCAGCAGACTGTATAGCATACGATTCAGTCACTTGGCCGCCACCCATTGCCTTAGTATGTGGCGCTAAAAACTGCGGAAAATCCACCTTTTCCCGCCACCTCCTCAACATTTTTCTCCGGAGGTATATAAAAAAGTTGGTTACTTGGATACAGATGTCGGTCAACCGGAGTTCAGTCCTCCTGGTTTTATTTGACAATCCCGCATCTGAAGACACGGAGAGATGTCTTTTCTTTGGTGATGTTTCTTCGAAGACGAATCCTACAACATACTTGAATTCTATATTTTCTTTATATGATTACTATAAGAAGGAATACTGCTTATCTGACCAGAGTGATAGACCTACCAAGACTGGATTGCCTCTTGTTGTGAATACACCTGGCTGGGTGAAAGGTGTTGGTTATGATTTATTGGTGGATATGTTGAAATATATTGCCCCTACCCATGTTGTTAAAATAAACATATCAGCCAAGAGTAAGAATCTACCAAGTGGGGCATTCTGGTTAGATGAGGATCATGATGCTATGCTAAATCTGATAGAGATCAATTCAGCTCGTCAGGACTCTTTCAATAGATCGGTTCTAGTACAAAAGGATGCACGTCTGTTGCATGATGTACGAATACTGGCTTATTTCAGGCAGTGCTTTTCAAGTAGCCTAAACATTACTACAATCAAAGAACTTGCTAATGCTCTGGCCTCTCAACCTCCTTATGAAGTTCCAATATCTAGCATCAAGATTAGACATCTCCATTGTCAGGTCCCAGGTGCTGAGAGCTTCTACAGTTTGAACGCAACCATTGTTGGCTTGGCAGTTAGCTCTGGAGGATCAAAAGATTTACCTTGGTGTGTTGGTCTTGGAATTGTGAGAGGCATTGACACAGTCAAAGGCTTGCTATATGTGATAACACCTGTTCCAAGAGGCACTCTGGAGAAGGTCAATCTTTTCCTGCAAGGTTATATCCAAATTCCTACTGTGTTGTTGCAGGTGCAGGGCTGCATATCGCCTTACATGTCTGCAAATGTTCTCTCAACAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

368

Amino Acids

40.57

Weight (kDa)

8.28

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_P	PF16575	43 - 182	3.8e-18	mRNA cleavage and polyadenylation factor CLP1 P-loop
NOL9_C	PF25467	255 - 345	5.5e-31	NOL9-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1039
Acc36I	ACCTGC	1 cut(s)	1039
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	5 cut(s)	50, 104, 141, 160, 267
AclWI	GGATC	2 cut(s)	585, 898
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	340, 1029
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	651, 681
AfiI	CCNNNNNNNGG	1 cut(s)	820
AflIII	ACRYGT	1 cut(s)	1074
AgsI	TTSAA	5 cut(s)	340, 490, 634, 714, 853
AjiI	CACGTC	1 cut(s)	665
AjnI	CCWGG	3 cut(s)	246, 442, 826
AluBI	AGCT	4 cut(s)	617, 840, 882, 1101
AluI	AGCT	4 cut(s)	617, 840, 882, 1101
AlwI	GGATC	2 cut(s)	585, 898
AlwNI	CAGNNNCTG	1 cut(s)	833
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	3 cut(s)	3, 101, 759
ApeKI	GCWGC	2 cut(s)	68, 1059
ApoI	RAATTY	2 cut(s)	340, 1029
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	3 cut(s)	17, 60, 823
AsuHPI	GGTGA	2 cut(s)	314, 463
AsuII	TTCGAA	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	17, 60, 823
BaeI	ACNNNNGTAYC	2 cut(s)	206, 239
BbsI	GAAGAC	2 cut(s)	282, 323
BbvI	GCAGC	2 cut(s)	80, 1046
BciT130I	CCWGG	3 cut(s)	248, 444, 828
BciVI	GTATCC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	647, 792
BfmI	CTRYAG	1 cut(s)	844
BfoI	RGCGCY	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	1039
BfuI	GTATCC	1 cut(s)	207
BisI	GCNGC	3 cut(s)	69, 104, 1060
BlsI	GCNGC	3 cut(s)	70, 105, 1061
Bme1390I	CCNGG	3 cut(s)	248, 444, 828
Bme18I	GGWCC	3 cut(s)	17, 60, 823
BmgBI	CACGTC	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	17, 60, 823
BmiI	GGNNCC	2 cut(s)	19, 825
BmrFI	CCNGG	3 cut(s)	248, 444, 828
BmsI	GCATC	4 cut(s)	278, 574, 649, 804
BpiI	GAAGAC	2 cut(s)	282, 323
BpmI	CTGGAG	2 cut(s)	906, 1013
Bpu14I	TTCGAA	1 cut(s)	314
BsaBI	GATNNNNATC	2 cut(s)	576, 605
BsaJI	CCNNGG	3 cut(s)	63, 826, 905
BsaWI	WCCGGW	2 cut(s)	183, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	820
Bse1I	ACTGG	2 cut(s)	421, 693
Bse3DI	GCAATG	1 cut(s)	111
Bse8I	GATNNNNATC	2 cut(s)	576, 605
BseAI	TCCGGA	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	248, 444, 828
BseDI	CCNNGG	3 cut(s)	63, 826, 905
BseGI	GGATG	1 cut(s)	664
BseJI	GATNNNNATC	2 cut(s)	576, 605
BseLI	CCNNNNNNNGG	1 cut(s)	820
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	2 cut(s)	421, 693
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	80, 1046
BseYI	CCCAGC	1 cut(s)	447
BsgI	GTGCAG	1 cut(s)	1073
BshFI	GGCC	3 cut(s)	5, 103, 761
BsiSI	CCGG	3 cut(s)	53, 184, 232
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	1 cut(s)	820
BsmFI	GGGAC	1 cut(s)	809
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	5, 103, 761
Bsp119I	TTCGAA	1 cut(s)	314
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	577, 606, 638, 890
BspACI	CCGC	5 cut(s)	50, 104, 141, 160, 267
BspANI	GGCC	3 cut(s)	5, 103, 761
BspCNI	CTCAG	1 cut(s)	826
BspEI	TCCGGA	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	19, 825
BspMI	ACCTGC	1 cut(s)	1039
BspPI	GGATC	2 cut(s)	585, 898
BspT104I	TTCGAA	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	421, 693
BssECI	CCNNGG	3 cut(s)	63, 826, 905
BssMI	GATC	4 cut(s)	577, 606, 638, 890
BssT1I	CCWWGG	1 cut(s)	905
Bst2UI	CCWGG	3 cut(s)	248, 444, 828
Bst4CI	ACNGT	4 cut(s)	77, 848, 946, 1039
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	956
BstDEI	CTNAG	2 cut(s)	118, 834
BstF5I	GGATG	1 cut(s)	664
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	580, 609, 641, 893
BstMBI	GATC	4 cut(s)	577, 606, 638, 890
BstNI	CCWGG	3 cut(s)	248, 444, 828
BstNSI	RCATGY	1 cut(s)	1078
BstSCI	CCNGG	3 cut(s)	246, 442, 826
BstSFI	CTRYAG	1 cut(s)	844
BstV1I	GCAGC	2 cut(s)	80, 1046
BstV2I	GAAGAC	2 cut(s)	282, 323
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	5, 103, 761
BtrI	CACGTC	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	1 cut(s)	710
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	1 cut(s)	956
CaiI	CAGNNNCTG	1 cut(s)	833
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	17, 60, 823
Csp6I	GTAC	2 cut(s)	650, 680
CviAII	CATG	4 cut(s)	509, 581, 674, 1075
CviQI	GTAC	2 cut(s)	650, 680
DdeI	CTNAG	2 cut(s)	118, 834
DpnI	GATC	4 cut(s)	579, 608, 640, 892
DpnII	GATC	4 cut(s)	577, 606, 638, 890
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	905
Eco47I	GGWCC	3 cut(s)	17, 60, 823
Eco57I	CTGAAG	1 cut(s)	294
EcoO109I	RGGNCCY	2 cut(s)	17, 823
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	3 cut(s)	246, 442, 826
EcoT14I	CCWWGG	1 cut(s)	905
ErhI	CCWWGG	1 cut(s)	905
FaeI	CATG	4 cut(s)	512, 584, 677, 1078
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	4 cut(s)	508, 580, 673, 1074
FauI	CCCGC	2 cut(s)	167, 274
Fnu4HI	GCNGC	3 cut(s)	69, 104, 1060
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	3 cut(s)	69, 104, 1060
FspBI	CTAG	2 cut(s)	647, 792
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	69, 104, 1060
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	2 cut(s)	906, 1013
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	5, 103, 761
HapII	CCGG	3 cut(s)	53, 184, 232
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	512, 584, 677, 1078
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	4 cut(s)	89, 322, 544, 626
HpaII	CCGG	3 cut(s)	53, 184, 232
HphI	GGTGA	2 cut(s)	314, 463
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	4 cut(s)	64, 274, 391, 600
Hpy188III	TCNNGA	7 cut(s)	15, 184, 581, 623, 799, 885, 992
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	367, 991
HpyCH4III	ACNGT	4 cut(s)	77, 848, 946, 1039
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	7 cut(s)	662, 673, 1015, 1048, 1054, 1062, 1082
HpyF3I	CTNAG	2 cut(s)	118, 834
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	4 cut(s)	512, 584, 677, 1078
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	577, 606, 638, 890
Lsp1109I	GCAGC	2 cut(s)	80, 1046
LweI	GCATC	4 cut(s)	278, 574, 649, 804
MaeI	CTAG	2 cut(s)	647, 792
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	2 cut(s)	94, 205
MalI	GATC	4 cut(s)	579, 608, 640, 892
MboI	GATC	4 cut(s)	577, 606, 638, 890
MboII	GAAGA	3 cut(s)	287, 303, 328
MluCI	AATT	4 cut(s)	340, 610, 924, 1029
MlyI	GAGTC	1 cut(s)	620
MroI	TCCGGA	1 cut(s)	183
MseI	TTAA	1 cut(s)	516
MspI	CCGG	3 cut(s)	53, 184, 232
MspR9I	CCNGG	3 cut(s)	248, 444, 828
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	3 cut(s)	248, 444, 828
NdeII	GATC	4 cut(s)	577, 606, 638, 890
NlaIII	CATG	4 cut(s)	512, 584, 677, 1078
NlaIV	GGNNCC	2 cut(s)	19, 825
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	1078
NspV	TTCGAA	1 cut(s)	314
PagI	TCATGA	1 cut(s)	580
PaqCI	CACCTGC	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	1074
PctI	GAATGC	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	89, 322, 544
PflFI	GACNNNGTC	1 cut(s)	944
PkrI	GCNGC	3 cut(s)	70, 105, 1061
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
PpuMI	RGGWCCY	2 cut(s)	17, 823
PscI	ACATGT	1 cut(s)	1074
Psp5II	RGGWCCY	2 cut(s)	17, 823
Psp6I	CCWGG	3 cut(s)	246, 442, 826
PspFI	CCCAGC	1 cut(s)	447
PspGI	CCWGG	3 cut(s)	246, 442, 826
PspN4I	GGNNCC	2 cut(s)	19, 825
PspPI	GGNCC	3 cut(s)	17, 60, 823
PspPPI	RGGWCCY	2 cut(s)	17, 823
PstNI	CAGNNNCTG	1 cut(s)	833
PsyI	GACNNNGTC	1 cut(s)	944
RsaI	GTAC	2 cut(s)	651, 681
RsaNI	GTAC	2 cut(s)	650, 680
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	3 cut(s)	69, 104, 1060
Sau3AI	GATC	4 cut(s)	577, 606, 638, 890
Sau96I	GGNCC	3 cut(s)	17, 60, 823
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	3 cut(s)	248, 444, 828
SfaNI	GCATC	4 cut(s)	278, 574, 649, 804
SfcI	CTRYAG	1 cut(s)	844
SfuI	TTCGAA	1 cut(s)	314
SinI	GGWCC	3 cut(s)	17, 60, 823
Sse9I	AATT	4 cut(s)	340, 610, 924, 1029
SsiI	CCGC	5 cut(s)	50, 104, 141, 160, 267
SspMI	CTAG	2 cut(s)	647, 792
StyD4I	CCNGG	3 cut(s)	246, 442, 826
StyI	CCWWGG	1 cut(s)	905
TaaI	ACNGT	4 cut(s)	77, 848, 946, 1039
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	1 cut(s)	314
TaqII	GACCGA	1 cut(s)	214
TasI	AATT	4 cut(s)	340, 610, 924, 1029
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	3 cut(s)	89, 322, 544
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	710
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	68, 1059
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	792
TspGWI	ACGGA	2 cut(s)	18, 296
TspRI	CASTG	1 cut(s)	710
Tth111I	GACNNNGTC	1 cut(s)	944
VpaK11BI	GGWCC	3 cut(s)	17, 60, 823
XapI	RAATTY	2 cut(s)	340, 1029
XceI	RCATGY	1 cut(s)	1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XspI	CTAG	2 cut(s)	647, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.