Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

2053602 .. 2056906

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG030300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTTCAATTTCAGGACCTGAAAACCCGTCGCCAAACATTTACATACCGCCAGAATGGTCCGACGCCGTCGCACACGCCTCCGTCGCTTCGCCGCCGCCCATTGTCTTAGTCTGTGGCGCCAAGAACTGTGGAAAGTCCACCTTCTCCCGCTACCTCCTCAACACTCTTCTCCACCGGTATAAGAAAGTTGGGTACTTGGATACTGATGTGGGTCAACCTGAGTTTAGTCCTCCTGGGTTTCTATCTCTTACTGTGGTAGATGAAGTCACTCCAGATTTGACAATCCCACATATGAAGACGGCGGAGAGATGTTTGTTCTTTGGCGATGTTTCTTCGAAAAGGAATCCGACAACATACTTAAATTGTATATGTGCTTTATATGATTACTATCGGAAGGAGTACTGCAACAGTGATAACTCTAATAATATTGGATTGCCTCTTGTTGTGAATACACCTGGATGGGTGAAAGGTATTGGTTATGATCTTTTGGTGGATATGTTGAAGTATATTGCCCCTACCCATGTTGTTAAAATAAACATATCTGCTCAGAGTAAGAATCTACCAGATGGGCGATTCTGGTTAGATGAGGATTATGATGGTATGGTAAATCTAACAGAGATCAGTTCAGCTCGTCAGGACTCTTTGAATAGATCGGTTCTAGTCCAAAAGGATGCACGGCTGCTGCGCGATATACGTTTAATGGCTTATTTCAGGCAGTGCTTTTCAAGTAACTTGAACATTTCTACAATCAAAGAACTTGCGAATGCTTTGGCATCTCACCCTCCTTATGAAGTTCCAATATCTAGCATTAAGATTAGACATCTCCATTGTCAGGTCCCAGGTACTGAGATCTTCTATAGTTTGAATGGAAGCATTGTTGGCTTGGCAGTTAGCTCTGAAGGCTCAAAAGATTTACCATGGTGTGTTGGTCTTGGAATTGTGAGGAGCATTGACACACTCAAAGGCTTGCTATATGTGATAACACCTGTTCCACAAGGCACGCTGGAAAATGTTGATCTTCTGCTGCAGGGTTTTATCCAAATTCCTACTAGTTTGTTGCAGGTCCAGGGGAGCAGATCGCCTTATATGTCTGCAAATGTTTTGTCTTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

372

Amino Acids

40.96

Weight (kDa)

6.38

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_P	PF16575	40 - 238	2.8e-38	mRNA cleavage and polyadenylation factor CLP1 P-loop
NOL9_C	PF25467	260 - 350	2.7e-32	NOL9-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1054
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	690
AciI	CCGC	5 cut(s)	50, 95, 98, 151, 305
AcsI	RAATTY	1 cut(s)	1044
AcuI	CTGAAG	1 cut(s)	921
AcyI	GRCGYC	2 cut(s)	66, 120
AfaI	GTAC	3 cut(s)	197, 404, 847
AfiI	CCNNNNNNNGG	1 cut(s)	835
AgeI	ACCGGT	1 cut(s)	177
AgsI	TTSAA	7 cut(s)	9, 505, 649, 729, 739, 868, 1113
AhlI	ACTAGT	1 cut(s)	1052
AjnI	CCWGG	4 cut(s)	235, 457, 841, 1068
AluBI	AGCT	3 cut(s)	632, 897, 1116
AluI	AGCT	3 cut(s)	632, 897, 1116
AlwNI	CAGNNNCTG	2 cut(s)	20, 848
ApeKI	GCWGC	3 cut(s)	682, 685, 1027
ApoI	RAATTY	1 cut(s)	1044
ArsI	GACNNNNNNTTYG	1 cut(s)	1091
AsiGI	ACCGGT	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	122, 690
AspS9I	GGNCC	4 cut(s)	17, 60, 838, 1066
AsuHPI	GGTGA	2 cut(s)	478, 773
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	4 cut(s)	17, 60, 838, 1066
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
BanI	GGYRCC	1 cut(s)	119
BbsI	GAAGAC	2 cut(s)	305, 1101
BbvI	GCAGC	3 cut(s)	669, 672, 1014
BccI	CCATC	3 cut(s)	456, 563, 593
BceAI	ACGGC	3 cut(s)	53, 318, 695
BciT130I	CCWGG	4 cut(s)	237, 459, 843, 1070
BciVI	GTATCC	1 cut(s)	196
BcuI	ACTAGT	1 cut(s)	1052
BfaI	CTAG	4 cut(s)	662, 807, 1053, 1117
BfmI	CTRYAG	2 cut(s)	859, 1028
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	1054
BfuI	GTATCC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	852
BisI	GCNGC	5 cut(s)	95, 98, 683, 686, 1028
BlsI	GCNGC	5 cut(s)	96, 99, 684, 687, 1029
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	4 cut(s)	237, 459, 843, 1070
Bme18I	GGWCC	4 cut(s)	17, 60, 838, 1066
BmgT120I	GGNCC	4 cut(s)	17, 60, 838, 1066
BmiI	GGNNCC	2 cut(s)	121, 840
BmrFI	CCNGG	4 cut(s)	237, 459, 843, 1070
BmsI	GCATC	2 cut(s)	664, 785
BpiI	GAAGAC	2 cut(s)	305, 1101
BpmI	CTGGAG	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	2 cut(s)	66, 120
BsaJI	CCNNGG	4 cut(s)	236, 841, 920, 1069
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	835
Bse118I	RCCGGY	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	4 cut(s)	237, 459, 843, 1070
BseDI	CCNNGG	4 cut(s)	236, 841, 920, 1069
BseGI	GGATG	2 cut(s)	467, 679
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	835
BseMII	CTCAG	3 cut(s)	213, 563, 840
BseRI	GAGGAG	2 cut(s)	149, 961
BseXI	GCAGC	3 cut(s)	669, 672, 1014
Bsh1236I	CGCG	1 cut(s)	690
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	835
BsmFI	GGGAC	1 cut(s)	824
BsmI	GAATGC	1 cut(s)	772
Bsp119I	TTCGAA	1 cut(s)	338
Bsp143I	GATC	6 cut(s)	484, 621, 653, 852, 1018, 1079
Bsp19I	CCATGG	1 cut(s)	920
BspACI	CCGC	5 cut(s)	50, 95, 98, 151, 305
BspCNI	CTCAG	3 cut(s)	214, 562, 841
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	2 cut(s)	121, 840
BspMAI	CTGCAG	1 cut(s)	1032
BspMI	ACCTGC	1 cut(s)	1054
BspT104I	TTCGAA	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	4 cut(s)	236, 841, 920, 1069
BssMI	GATC	6 cut(s)	484, 621, 653, 852, 1018, 1079
BssNI	GRCGYC	2 cut(s)	66, 120
BssT1I	CCWWGG	1 cut(s)	920
Bst2UI	CCWGG	4 cut(s)	237, 459, 843, 1070
Bst4CI	ACNGT	3 cut(s)	131, 256, 413
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	2 cut(s)	66, 120
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	971, 1004
BstDEI	CTNAG	4 cut(s)	109, 222, 549, 849
BstDSI	CCRYGG	1 cut(s)	920
BstF5I	GGATG	2 cut(s)	467, 679
BstFNI	CGCG	1 cut(s)	690
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 690
BstKTI	GATC	6 cut(s)	487, 624, 656, 855, 1021, 1082
BstMBI	GATC	6 cut(s)	484, 621, 653, 852, 1018, 1079
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 882, 903
BstNI	CCWGG	4 cut(s)	237, 459, 843, 1070
BstSCI	CCNGG	4 cut(s)	235, 457, 841, 1068
BstSFI	CTRYAG	2 cut(s)	859, 1028
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	3 cut(s)	669, 672, 1014
BstV2I	GAAGAC	2 cut(s)	305, 1101
BstX2I	RGATCY	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	852
BsuI	GTATCC	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	920
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	467, 679
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	2 cut(s)	418, 725
BveI	ACCTGC	1 cut(s)	1054
Cac8I	GCNNGC	2 cut(s)	971, 1004
CaiI	CAGNNNCTG	2 cut(s)	20, 848
CfoI	GCGC	2 cut(s)	122, 690
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	4 cut(s)	17, 60, 838, 1066
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	196, 403, 846
CspAI	ACCGGT	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	2 cut(s)	524, 921
CviJI	RGCY	9 cut(s)	5, 632, 682, 707, 885, 897, 906, 969, 1116
CviKI_1	RGCY	9 cut(s)	5, 632, 682, 707, 885, 897, 906, 969, 1116
CviQI	GTAC	3 cut(s)	196, 403, 846
DdeI	CTNAG	4 cut(s)	109, 222, 549, 849
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	6 cut(s)	486, 623, 655, 854, 1020, 1081
DpnII	GATC	6 cut(s)	484, 621, 653, 852, 1018, 1079
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	920
Eco47I	GGWCC	4 cut(s)	17, 60, 838, 1066
Eco57I	CTGAAG	1 cut(s)	921
EcoO109I	RGGNCCY	2 cut(s)	17, 838
EcoRII	CCWGG	4 cut(s)	235, 457, 841, 1068
EcoT14I	CCWWGG	1 cut(s)	920
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	920
FaeI	CATG	2 cut(s)	527, 924
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	2 cut(s)	523, 920
FauI	CCCGC	1 cut(s)	158
FauNDI	CATATG	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	95, 98, 683, 686, 1028
FokI	GGATG	2 cut(s)	474, 686
Fsp4HI	GCNGC	5 cut(s)	95, 98, 683, 686, 1028
FspBI	CTAG	4 cut(s)	662, 807, 1053, 1117
GlaI	GCGC	2 cut(s)	121, 689
GluI	GCNGC	5 cut(s)	95, 98, 683, 686, 1028
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	122, 690
Hin1I	GRCGYC	2 cut(s)	66, 120
Hin1II	CATG	2 cut(s)	527, 924
Hin6I	GCGC	2 cut(s)	120, 688
HinP1I	GCGC	2 cut(s)	120, 688
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HinfI	GANTC	4 cut(s)	346, 559, 576, 641
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	478, 773
Hpy166II	GTNNAC	2 cut(s)	141, 218
Hpy188I	TCNGA	5 cut(s)	64, 351, 396, 552, 901
Hpy188III	TCNNGA	3 cut(s)	15, 275, 638
Hpy8I	GTNNAC	2 cut(s)	141, 218
Hpy99I	CGWCG	4 cut(s)	34, 68, 74, 89
HpyAV	CCTTC	3 cut(s)	154, 391, 896
HpyCH4III	ACNGT	3 cut(s)	131, 256, 413
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	5 cut(s)	408, 677, 1030, 1063, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 882, 903
HpyF3I	CTNAG	4 cut(s)	109, 222, 549, 849
HpySE526I	ACGT	1 cut(s)	697
Hsp92I	GRCGYC	2 cut(s)	66, 120
Hsp92II	CATG	2 cut(s)	527, 924
HspAI	GCGC	2 cut(s)	120, 688
KasI	GGCGCC	1 cut(s)	119
Kzo9I	GATC	6 cut(s)	484, 621, 653, 852, 1018, 1079
LmnI	GCTCC	2 cut(s)	948, 1074
Lsp1109I	GCAGC	3 cut(s)	669, 672, 1014
LweI	GCATC	2 cut(s)	664, 785
MaeI	CTAG	4 cut(s)	662, 807, 1053, 1117
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	2 cut(s)	268, 731
MalI	GATC	6 cut(s)	486, 623, 655, 854, 1020, 1081
MboI	GATC	6 cut(s)	484, 621, 653, 852, 1018, 1079
MboII	GAAGA	6 cut(s)	161, 310, 327, 847, 1013, 1101
MflI	RGATCY	1 cut(s)	852
MluCI	AATT	4 cut(s)	9, 364, 939, 1044
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	2 cut(s)	87, 374
MnlI	CCTC	8 cut(s)	91, 167, 170, 243, 450, 583, 795, 939
MseI	TTAA	4 cut(s)	362, 531, 701, 813
MslI	CAYNNNNRTG	1 cut(s)	460
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	4 cut(s)	237, 459, 843, 1070
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	4 cut(s)	237, 459, 843, 1070
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	3 cut(s)	86, 882, 903
NarI	GGCGCC	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	920
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	6 cut(s)	484, 621, 653, 852, 1018, 1079
NlaIII	CATG	2 cut(s)	527, 924
NlaIV	GGNNCC	2 cut(s)	121, 840
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	338
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	3 cut(s)	346, 559, 576
PflFI	GACNNNGTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	177
PkrI	GCNGC	5 cut(s)	96, 99, 684, 687, 1029
PleI	GAGTC	1 cut(s)	635
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	635
PpuMI	RGGWCCY	2 cut(s)	17, 838
Psp5II	RGGWCCY	2 cut(s)	17, 838
Psp6I	CCWGG	4 cut(s)	235, 457, 841, 1068
PspGI	CCWGG	4 cut(s)	235, 457, 841, 1068
PspN4I	GGNNCC	2 cut(s)	121, 840
PspPI	GGNCC	4 cut(s)	17, 60, 838, 1066
PspPPI	RGGWCCY	2 cut(s)	17, 838
PstI	CTGCAG	1 cut(s)	1032
PstNI	CAGNNNCTG	2 cut(s)	20, 848
PsuI	RGATCY	1 cut(s)	852
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	3 cut(s)	197, 404, 847
RsaNI	GTAC	3 cut(s)	196, 403, 846
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	4 cut(s)	362, 531, 701, 813
SatI	GCNGC	5 cut(s)	95, 98, 683, 686, 1028
Sau3AI	GATC	6 cut(s)	484, 621, 653, 852, 1018, 1079
Sau96I	GGNCC	4 cut(s)	17, 60, 838, 1066
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	4 cut(s)	237, 459, 843, 1070
SfaNI	GCATC	2 cut(s)	664, 785
SfcI	CTRYAG	2 cut(s)	859, 1028
SfoI	GGCGCC	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	4 cut(s)	17, 60, 838, 1066
SmiMI	CAYNNNNRTG	1 cut(s)	460
SpeI	ACTAGT	1 cut(s)	1052
Sse9I	AATT	4 cut(s)	9, 364, 939, 1044
SsiI	CCGC	5 cut(s)	50, 95, 98, 151, 305
SspDI	GGCGCC	1 cut(s)	119
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	4 cut(s)	662, 807, 1053, 1117
StyD4I	CCNGG	4 cut(s)	235, 457, 841, 1068
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	3 cut(s)	131, 256, 413
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	1 cut(s)	338
TasI	AATT	4 cut(s)	9, 364, 939, 1044
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	97, 100
TfiI	GAWTC	3 cut(s)	346, 559, 576
Tru1I	TTAA	4 cut(s)	362, 531, 701, 813
Tru9I	TTAA	4 cut(s)	362, 531, 701, 813
TscAI	CASTG	2 cut(s)	418, 725
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	682, 685, 1027
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	279, 311, 807
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	418, 725
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	4 cut(s)	17, 60, 838, 1066
XapI	RAATTY	1 cut(s)	1044
XspI	CTAG	4 cut(s)	662, 807, 1053, 1117
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.