Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005088

Physical Location & Seq

Genomic Coordinates Forward (+)

2229538 .. 2232713

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG032100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCTTCAATTTCAGGACCTGAAAACCCGTCGCCGAACATCTACATACCGCCAGAATGGTCCGACGCCGCCGACGCCGTCGCACACGCCTCCGTCGGTTCGCCGCCGCCCATTGTCTTAGTCTGTGGCGCCAAGAACTGTGGAAAGTCCACCTTCTCCCGCTACCTCCTCAACATTCTTCTCCACCGGTATAAGAAAGTTGGGTACTTGGATACAGATGTGGGTCAACCTGAGTTTAGTCCTCCTGGGTTTCTATCTCTTACTGTAGTAGATGAAGTTACTCCAGATTTGACAATCCCACATTTGAAGACGGCGGAGAGATGTTTGTTCTTTGGCGATGTTTCTTCGAAAAGGAATCCAACAACATACTTAAATTGTATATGTGCTTTATATGATTACTATCGGAAGGAGTACTGCAACAGTGATAACTCTAATAATATTGGATTGCCTCTCGTTGTGAATACACCTGGATGGGTGAAAGGTATTGGTTATGATATTTTGGTGGATATGTTGAAGTATATTTCCCCTACCCATGTTGTTAAAATAAACATATCTGCTCAGAGTAAGAATCTACCAGATGGGCGATTCTGGTTAGATGAGGATTATGATGGTATGGTAAATCTAACAGAGATCAGTTCAGCTCGTCAGGACTCTTTGAATAGATCGGTTCTAGTCCAAAAGGATGCACGGCTGCTGCGCGATATACGTTTAATGGCTTATTTCAGGCAGTGCTTTTCAAGTAACTTGAACATTTCTACAATCAAAGAACTTGCTAATGCTTTGGCATCTCACCCTCCTTATGAAGTTCCAATATCTAGCATTAAGATTAGGCATCTCCATTGTCAGGTCCCAGGTACTGAGATCTTCTATAGTTTGAATGGAAGCATTGTTGGCTTGGCAGTTAGCACTGAAGGCTCAAAAGATTTACCATGGTGTGTTGGTCTTGGAATTGTGAGGAGCATTGACACACTCAAAGGCTTGCTATATGTGATAACACCTGTTCCACAAGGCACTCTGGAAAATGTGGATCTTCTGCTGCAGGGTTTTATCCAAATTCCTACTAGTTTGTTGCAGGTCCAGGGGAGCAGATCGCCTTATATGTCTGCAAATGTTTTGTCTTCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

375

Amino Acids

41.23

Weight (kDa)

6.17

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_P	PF16575	43 - 241	1.5e-37	mRNA cleavage and polyadenylation factor CLP1 P-loop
NOL9_C	PF25467	263 - 353	3.6e-32	NOL9-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11010 AT5G11010 AT5G11010 AT5G11010
fragaria_vesca	FvH4_5g16020 FvH4_5g16020 FvH4_5g16020 FvH4_5g16020
malus_domestica	MD06G1183600.v1.1 MD14G1057100.v1.1 MD14G1189700.v1.1
prunus_persica	Prupe.5G161200_v2.0.a1 Prupe.5G182300_v2.0.a1 Prupe.5G182300_v2.0.a1
pyrus_communis	pycom06g16270 pycom14g15720
rosa_chinensis	RchiOBHm_Chr7g0180051
rosa_laevigata	RLG00000005299
rosa_multiflora	Rmu_co8044072.1_g000001 Rmu_sc0002219.1_g000023 Rmu_sc0017616.1_g000001 Rmu_ssc0000119.1_g000025
rosa_roxburghii	Rroxscaffold_3G00273170
rosa_rugosa	Rorug06G0430200 Rorug06G0430200
rosa_samantha	Rh7AG030400 Rh7BG030300 Rh7CG032100 Rh7DG031100
rosa_wichuraiana	Rw7G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1063
AccB1I	GGYRCC	1 cut(s)	128
AccII	CGCG	1 cut(s)	699
AciI	CCGC	6 cut(s)	50, 69, 104, 107, 160, 314
AclWI	GGATC	1 cut(s)	1035
AcsI	RAATTY	1 cut(s)	1053
AcuI	CTGAAG	1 cut(s)	930
AcyI	GRCGYC	3 cut(s)	66, 75, 129
AfaI	GTAC	3 cut(s)	206, 413, 856
AfiI	CCNNNNNNNGG	1 cut(s)	844
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	7 cut(s)	9, 307, 514, 658, 738, 748, 877
AhlI	ACTAGT	1 cut(s)	1061
AjnI	CCWGG	4 cut(s)	244, 466, 850, 1077
AluBI	AGCT	2 cut(s)	641, 1125
AluI	AGCT	2 cut(s)	641, 1125
AlwI	GGATC	1 cut(s)	1035
AlwNI	CAGNNNCTG	2 cut(s)	20, 857
ApeKI	GCWGC	3 cut(s)	691, 694, 1036
ApoI	RAATTY	1 cut(s)	1053
ArsI	GACNNNNNNTTYG	1 cut(s)	1100
AsiGI	ACCGGT	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	131, 699
AspS9I	GGNCC	4 cut(s)	17, 60, 847, 1075
AsuHPI	GGTGA	2 cut(s)	487, 782
AsuII	TTCGAA	1 cut(s)	347
AvaII	GGWCC	4 cut(s)	17, 60, 847, 1075
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanI	GGYRCC	1 cut(s)	128
BbsI	GAAGAC	2 cut(s)	314, 1110
BbvI	GCAGC	3 cut(s)	678, 681, 1023
BccI	CCATC	3 cut(s)	465, 572, 602
BceAI	ACGGC	3 cut(s)	62, 327, 704
BciT130I	CCWGG	4 cut(s)	246, 468, 852, 1079
BciVI	GTATCC	1 cut(s)	205
BcuI	ACTAGT	1 cut(s)	1061
BfaI	CTAG	4 cut(s)	671, 816, 1062, 1126
BfmI	CTRYAG	3 cut(s)	264, 868, 1037
BfoI	RGCGCY	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	1063
BfuI	GTATCC	1 cut(s)	205
BglII	AGATCT	1 cut(s)	861
BisI	GCNGC	6 cut(s)	69, 104, 107, 692, 695, 1037
BlsI	GCNGC	6 cut(s)	70, 105, 108, 693, 696, 1038
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	4 cut(s)	246, 468, 852, 1079
Bme18I	GGWCC	4 cut(s)	17, 60, 847, 1075
BmgT120I	GGNCC	4 cut(s)	17, 60, 847, 1075
BmiI	GGNNCC	2 cut(s)	130, 849
BmrFI	CCNGG	4 cut(s)	246, 468, 852, 1079
BmsI	GCATC	3 cut(s)	673, 794, 841
BpiI	GAAGAC	2 cut(s)	314, 1110
BpmI	CTGGAG	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	3 cut(s)	66, 75, 129
BsaJI	CCNNGG	4 cut(s)	245, 850, 929, 1078
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	844
Bse118I	RCCGGY	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	4 cut(s)	246, 468, 852, 1079
BseDI	CCNNGG	4 cut(s)	245, 850, 929, 1078
BseGI	GGATG	2 cut(s)	476, 688
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	844
BseMII	CTCAG	3 cut(s)	222, 572, 849
BseRI	GAGGAG	2 cut(s)	158, 970
BseXI	GCAGC	3 cut(s)	678, 681, 1023
Bsh1236I	CGCG	1 cut(s)	699
BshNI	GGYRCC	1 cut(s)	128
BshTI	ACCGGT	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	833
BslI	CCNNNNNNNGG	1 cut(s)	844
BsmFI	GGGAC	1 cut(s)	833
Bsp119I	TTCGAA	1 cut(s)	347
Bsp143I	GATC	5 cut(s)	630, 662, 861, 1027, 1088
Bsp19I	CCATGG	1 cut(s)	929
BspACI	CCGC	6 cut(s)	50, 69, 104, 107, 160, 314
BspCNI	CTCAG	3 cut(s)	223, 571, 850
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	2 cut(s)	130, 849
BspMAI	CTGCAG	1 cut(s)	1041
BspMI	ACCTGC	1 cut(s)	1063
BspPI	GGATC	1 cut(s)	1035
BspT104I	TTCGAA	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	4 cut(s)	245, 850, 929, 1078
BssMI	GATC	5 cut(s)	630, 662, 861, 1027, 1088
BssNI	GRCGYC	3 cut(s)	66, 75, 129
BssT1I	CCWWGG	1 cut(s)	929
Bst2UI	CCWGG	4 cut(s)	246, 468, 852, 1079
Bst4CI	ACNGT	3 cut(s)	140, 265, 422
BstACI	GRCGYC	3 cut(s)	66, 75, 129
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	980
BstDEI	CTNAG	4 cut(s)	118, 231, 558, 858
BstDSI	CCRYGG	1 cut(s)	929
BstF5I	GGATG	2 cut(s)	476, 688
BstFNI	CGCG	1 cut(s)	699
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	131, 699
BstKTI	GATC	5 cut(s)	633, 665, 864, 1030, 1091
BstMBI	GATC	5 cut(s)	630, 662, 861, 1027, 1088
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 891, 912
BstNI	CCWGG	4 cut(s)	246, 468, 852, 1079
BstSCI	CCNGG	4 cut(s)	244, 466, 850, 1077
BstSFI	CTRYAG	3 cut(s)	264, 868, 1037
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	678, 681, 1023
BstV2I	GAAGAC	2 cut(s)	314, 1110
BstX2I	RGATCY	2 cut(s)	861, 1027
BstYI	RGATCY	2 cut(s)	861, 1027
BsuI	GTATCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	929
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	476, 688
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	3 cut(s)	427, 734, 906
BveI	ACCTGC	1 cut(s)	1063
Cac8I	GCNNGC	1 cut(s)	980
CaiI	CAGNNNCTG	2 cut(s)	20, 857
CfoI	GCGC	2 cut(s)	131, 699
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	4 cut(s)	17, 60, 847, 1075
CseI	GACGC	2 cut(s)	74, 83
Csp6I	GTAC	3 cut(s)	205, 412, 855
CspAI	ACCGGT	1 cut(s)	186
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	2 cut(s)	533, 930
CviJI	RGCY	8 cut(s)	5, 641, 691, 716, 894, 915, 978, 1125
CviKI_1	RGCY	8 cut(s)	5, 641, 691, 716, 894, 915, 978, 1125
CviQI	GTAC	3 cut(s)	205, 412, 855
DdeI	CTNAG	4 cut(s)	118, 231, 558, 858
DinI	GGCGCC	1 cut(s)	130
DpnI	GATC	5 cut(s)	632, 664, 863, 1029, 1090
DpnII	GATC	5 cut(s)	630, 662, 861, 1027, 1088
EciI	GGCGGA	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	929
Eco47I	GGWCC	4 cut(s)	17, 60, 847, 1075
Eco57I	CTGAAG	1 cut(s)	930
EcoO109I	RGGNCCY	2 cut(s)	17, 847
EcoRII	CCWGG	4 cut(s)	244, 466, 850, 1077
EcoT14I	CCWWGG	1 cut(s)	929
EgeI	GGCGCC	1 cut(s)	130
EheI	GGCGCC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	929
FaeI	CATG	2 cut(s)	536, 933
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	2 cut(s)	532, 929
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	6 cut(s)	69, 104, 107, 692, 695, 1037
FokI	GGATG	2 cut(s)	483, 695
Fsp4HI	GCNGC	6 cut(s)	69, 104, 107, 692, 695, 1037
FspBI	CTAG	4 cut(s)	671, 816, 1062, 1126
GlaI	GCGC	2 cut(s)	130, 698
GluI	GCNGC	6 cut(s)	69, 104, 107, 692, 695, 1037
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	132
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	2 cut(s)	74, 83
HhaI	GCGC	2 cut(s)	131, 699
Hin1I	GRCGYC	3 cut(s)	66, 75, 129
Hin1II	CATG	2 cut(s)	536, 933
Hin6I	GCGC	2 cut(s)	129, 697
HinP1I	GCGC	2 cut(s)	129, 697
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	4 cut(s)	355, 568, 585, 650
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	487, 782
Hpy166II	GTNNAC	2 cut(s)	150, 227
Hpy188I	TCNGA	3 cut(s)	64, 405, 561
Hpy188III	TCNNGA	4 cut(s)	15, 284, 647, 1016
Hpy8I	GTNNAC	2 cut(s)	150, 227
Hpy99I	CGWCG	5 cut(s)	34, 68, 77, 83, 98
HpyAV	CCTTC	3 cut(s)	163, 400, 905
HpyCH4III	ACNGT	3 cut(s)	140, 265, 422
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	5 cut(s)	417, 686, 1039, 1072, 1106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 891, 912
HpyF3I	CTNAG	4 cut(s)	118, 231, 558, 858
HpySE526I	ACGT	1 cut(s)	706
Hsp92I	GRCGYC	3 cut(s)	66, 75, 129
Hsp92II	CATG	2 cut(s)	536, 933
HspAI	GCGC	2 cut(s)	129, 697
KasI	GGCGCC	1 cut(s)	128
Kzo9I	GATC	5 cut(s)	630, 662, 861, 1027, 1088
LmnI	GCTCC	2 cut(s)	957, 1083
Lsp1109I	GCAGC	3 cut(s)	678, 681, 1023
LweI	GCATC	3 cut(s)	673, 794, 841
MaeI	CTAG	4 cut(s)	671, 816, 1062, 1126
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	2 cut(s)	277, 740
MalI	GATC	5 cut(s)	632, 664, 863, 1029, 1090
MboI	GATC	5 cut(s)	630, 662, 861, 1027, 1088
MboII	GAAGA	6 cut(s)	170, 319, 336, 856, 1022, 1110
MflI	RGATCY	2 cut(s)	861, 1027
MluCI	AATT	4 cut(s)	9, 373, 948, 1053
Mly113I	GGCGCC	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	2 cut(s)	87, 383
MnlI	CCTC	8 cut(s)	100, 176, 179, 252, 459, 592, 804, 948
MseI	TTAA	4 cut(s)	371, 540, 710, 822
MslI	CAYNNNNRTG	1 cut(s)	469
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	4 cut(s)	246, 468, 852, 1079
MvaI	CCWGG	4 cut(s)	246, 468, 852, 1079
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	3 cut(s)	74, 891, 912
NarI	GGCGCC	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	929
NdeII	GATC	5 cut(s)	630, 662, 861, 1027, 1088
NlaIII	CATG	2 cut(s)	536, 933
NlaIV	GGNNCC	2 cut(s)	130, 849
NspV	TTCGAA	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	355, 568, 585
PflFI	GACNNNGTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	186
PkrI	GCNGC	6 cut(s)	70, 105, 108, 693, 696, 1038
PleI	GAGTC	1 cut(s)	644
PluTI	GGCGCC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	644
PpuMI	RGGWCCY	2 cut(s)	17, 847
Psp5II	RGGWCCY	2 cut(s)	17, 847
Psp6I	CCWGG	4 cut(s)	244, 466, 850, 1077
PspGI	CCWGG	4 cut(s)	244, 466, 850, 1077
PspN4I	GGNNCC	2 cut(s)	130, 849
PspPI	GGNCC	4 cut(s)	17, 60, 847, 1075
PspPPI	RGGWCCY	2 cut(s)	17, 847
PstI	CTGCAG	1 cut(s)	1041
PstNI	CAGNNNCTG	2 cut(s)	20, 857
PsuI	RGATCY	2 cut(s)	861, 1027
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	3 cut(s)	206, 413, 856
RsaNI	GTAC	3 cut(s)	205, 412, 855
RseI	CAYNNNNRTG	1 cut(s)	469
SaqAI	TTAA	4 cut(s)	371, 540, 710, 822
SatI	GCNGC	6 cut(s)	69, 104, 107, 692, 695, 1037
Sau3AI	GATC	5 cut(s)	630, 662, 861, 1027, 1088
Sau96I	GGNCC	4 cut(s)	17, 60, 847, 1075
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	4 cut(s)	246, 468, 852, 1079
SfaNI	GCATC	3 cut(s)	673, 794, 841
SfcI	CTRYAG	3 cut(s)	264, 868, 1037
SfoI	GGCGCC	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	4 cut(s)	17, 60, 847, 1075
SmiMI	CAYNNNNRTG	1 cut(s)	469
SpeI	ACTAGT	1 cut(s)	1061
Sse9I	AATT	4 cut(s)	9, 373, 948, 1053
SsiI	CCGC	6 cut(s)	50, 69, 104, 107, 160, 314
SspDI	GGCGCC	1 cut(s)	128
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	4 cut(s)	671, 816, 1062, 1126
StyD4I	CCNGG	4 cut(s)	244, 466, 850, 1077
StyI	CCWWGG	1 cut(s)	929
TaaI	ACNGT	3 cut(s)	140, 265, 422
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	347, 1121
TasI	AATT	4 cut(s)	9, 373, 948, 1053
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	3 cut(s)	71, 106, 109
TfiI	GAWTC	3 cut(s)	355, 568, 585
Tru1I	TTAA	4 cut(s)	371, 540, 710, 822
Tru9I	TTAA	4 cut(s)	371, 540, 710, 822
TscAI	CASTG	3 cut(s)	427, 734, 913
TseI	GCWGC	3 cut(s)	691, 694, 1036
TspDTI	ATGAA	2 cut(s)	288, 816
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	3 cut(s)	427, 734, 913
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	4 cut(s)	17, 60, 847, 1075
XapI	RAATTY	1 cut(s)	1053
XspI	CTAG	4 cut(s)	671, 816, 1062, 1126
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.