AT5G11190

Ethylene-responsive transcription factor SHINE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010712
Physical Location & Seq
Forward (+)
3564824 .. 3566260
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11190.1

Sequence Viewer

Length: 570 bp
ATGGTACATTCGAGGAAGTTCCGAGGTGTCCGCCAGCGACAATGGGGTTCTTGGGTCTCTGAGATTCGCCATCCTCTATTGAAGAGAAGAGTGTGGCTTGGAACTTTCGAAACGGCAGAAGCGGCTGCAAGAGCATACGACCAAGCGGCTCTTCTAATGAACGGCCAAAACGCTAAGACCAATTTCCCTGTCGTAAAATCAGAGGAAGGCTCCGATCACGTTAAAGATGTTAACTCTCCGTTGATGTCACCAAAGTCATTATCTGAGCTTTTGAACGCTAAGCTAAGGAAGAGCTGCAAAGACCTAACGCCTTCTTTGACGTGTCTCCGTCTTGATACTGACAGTTCCCACATTGGAGTTTGGCAGAAACGGGCCGGGTCGAAAACAAGTCCGACTTGGGTCATGCGCCTCGAACTTGGGAACGTAGTCAACGAAAGTGCGGTTGACTTAGGGTTGACTACGATGAACAAACAAAACGTTGAGAAAGAAGAAGAAGAAGAAGAAGCTATTATTAGTGATGAGGATCAGTTAGCTATGGAGATGATCGAGGAGTTGCTGAATTGGAGTTGA

Protein Analysis

189

Amino Acids

21.41

Weight (kDa)

5.87

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 6 - 55 8.1e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11190 AT5G25390 AT5G25390
fragaria_vesca FvH4_2g29150
malus_domestica MD08G1149200.v1.1 MD15G1124900.v1.1
prunus_persica Prupe.1G480400_v2.0.a1
pyrus_communis pycom08g12560 pycom15g11250
rosa_chinensis RchiOBHm_Chr6g0298011
rosa_laevigata RLG00000011543
rosa_multiflora Rmu_sc0002800.1_g000022
rosa_roxburghii Rroxscaffold_7G00170000 Rroxscaffold_7G00178830
rosa_rugosa Rorug06G0278000
rosa_samantha Rh6AG388300 Rh6BG396500 Rh6CG402500 Rh6DG388700
rosa_wichuraiana Rw6G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 31, 122, 146, 440
AclI AACGTT 1 cut(s) 477
AclWI GGATC 1 cut(s) 531
AcoI YGGCCR 1 cut(s) 163
AfaI GTAC 1 cut(s) 6
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 2 cut(s) 82, 274
AjiI CACGTC 1 cut(s) 321
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 5 cut(s) 268, 283, 294, 506, 533
AluI AGCT 5 cut(s) 268, 283, 294, 506, 533
Alw26I GTCTC 2 cut(s) 61, 329
AlwI GGATC 1 cut(s) 531
AoxI GGCC 2 cut(s) 163, 372
ApeKI GCWGC 2 cut(s) 125, 294
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 240
AsuII TTCGAA 1 cut(s) 108
BbvI GCAGC 2 cut(s) 112, 281
BccI CCATC 1 cut(s) 78
BceAI ACGGC 2 cut(s) 129, 178
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 61, 329
BisI GCNGC 4 cut(s) 123, 126, 147, 295
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 4 cut(s) 124, 127, 148, 296
Bme1390I CCNGG 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 376
BoxI GACNNNNGTC 1 cut(s) 398
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 522
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 522
BseMII CTCAG 2 cut(s) 51, 255
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 2 cut(s) 112, 281
BshFI GGCC 2 cut(s) 165, 374
BsiSI CCGG 1 cut(s) 375
BsmAI GTCTC 2 cut(s) 61, 329
BsnI GGCC 2 cut(s) 165, 374
Bso31I GGTCTC 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 108
Bsp143I GATC 3 cut(s) 214, 523, 543
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 4 cut(s) 31, 122, 146, 440
BspANI GGCC 2 cut(s) 165, 374
BspCNI CTCAG 2 cut(s) 52, 256
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 531
BspQI GCTCTTC 2 cut(s) 156, 284
BspT104I TTCGAA 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 214, 523, 543
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 4 cut(s) 77, 82, 156, 284
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 6 cut(s) 60, 174, 264, 279, 284, 448
BstF5I GGATG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 3 cut(s) 217, 526, 546
BstMAI GTCTC 2 cut(s) 61, 329
BstMBI GATC 3 cut(s) 214, 523, 543
BstMWI GCNNNNNNNGC 2 cut(s) 122, 131
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 112, 281
BsuRI GGCC 2 cut(s) 165, 374
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 5
CviAII CATG 1 cut(s) 403
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 6 cut(s) 60, 174, 264, 279, 284, 448
DpnI GATC 3 cut(s) 216, 525, 545
DpnII GATC 3 cut(s) 214, 523, 543
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 4 cut(s) 77, 82, 156, 284
EarI CTCTTC 4 cut(s) 77, 82, 156, 284
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 61
FaeI CATG 1 cut(s) 406
FaiI YATR 3 cut(s) 136, 404, 536
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 379, 411
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 4 cut(s) 123, 126, 147, 295
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 4 cut(s) 123, 126, 147, 295
GlaI GCGC 1 cut(s) 407
GluI GCNGC 4 cut(s) 123, 126, 147, 295
HaeIII GGCC 2 cut(s) 165, 374
HapII CCGG 1 cut(s) 375
HhaI GCGC 1 cut(s) 408
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 4 cut(s) 232, 430, 445, 456
HindII GTYRAC 4 cut(s) 232, 430, 445, 456
HinfI GANTC 1 cut(s) 64
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 1 cut(s) 375
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 4 cut(s) 232, 430, 445, 456
Hpy188I TCNGA 6 cut(s) 23, 61, 202, 214, 265, 393
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 4 cut(s) 232, 430, 445, 456
HpyAV CCTTC 2 cut(s) 200, 321
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 4 cut(s) 219, 320, 423, 477
HpyCH4V TGCA 2 cut(s) 128, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 131
HpyF3I CTNAG 6 cut(s) 60, 174, 264, 279, 284, 448
HpySE526I ACGT 4 cut(s) 219, 320, 423, 477
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 406
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 3 cut(s) 214, 523, 543
LguI GCTCTTC 2 cut(s) 156, 284
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 3 cut(s) 47, 201, 388
Lsp1109I GCAGC 2 cut(s) 112, 281
MaeII ACGT 4 cut(s) 219, 320, 423, 477
MaeIII GTNAC 1 cut(s) 246
MalI GATC 3 cut(s) 216, 525, 545
MboI GATC 3 cut(s) 214, 523, 543
MboII GAAGA 9 cut(s) 94, 99, 143, 301, 500, 503, 506, 509, 512
MluCI AATT 2 cut(s) 181, 559
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 7 cut(s) 6, 17, 84, 196, 419, 514, 541
MseI TTAA 2 cut(s) 222, 231
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 122, 131
NciI CCSGG 1 cut(s) 376
NdeII GATC 3 cut(s) 214, 523, 543
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 246
NspV TTCGAA 1 cut(s) 108
PciSI GCTCTTC 2 cut(s) 156, 284
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 4 cut(s) 124, 127, 148, 296
PshAI GACNNNNGTC 1 cut(s) 398
Psp1406I AACGTT 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 372
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SapI GCTCTTC 2 cut(s) 156, 284
SaqAI TTAA 2 cut(s) 222, 231
SatI GCNGC 4 cut(s) 123, 126, 147, 295
Sau3AI GATC 3 cut(s) 214, 523, 543
Sau96I GGNCC 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 376
SfuI TTCGAA 1 cut(s) 108
Sse9I AATT 2 cut(s) 181, 559
SsiI CCGC 4 cut(s) 31, 122, 146, 440
StyD4I CCNGG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 4 cut(s) 222, 323, 426, 480
TaqI TCGA 5 cut(s) 11, 108, 380, 411, 546
TasI AATT 2 cut(s) 181, 559
TauI GCSGC 2 cut(s) 125, 149
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 222, 231
Tru9I TTAA 2 cut(s) 222, 231
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 2 cut(s) 125, 294
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 2 cut(s) 173, 479
TspGWI ACGGA 2 cut(s) 228, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.