Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010712

Physical Location & Seq

Genomic Coordinates Reverse (-)

9070265 .. 9071680

Gene Structure 1416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1124900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGACGCTCATTTCCTTTTGTTCCAGTTGTCAAGAACCTGAGGGTGTGCAGGTGAATGACTTTATTACCCGCACTCTCTCCCTCTATACTATAGACTTTCCGACCTTGCAAGTCACCGACAGTTCTTATAAATGCCTATACTCTTCCTTCATCACTCTAACATCTCATCTCTCAAAAACTCTCTCTCTATGGATATTTCTCAAAAATCATAAAAACATGGTACAAACAAGGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGGAGGGTGTGGCTAGGGACGTTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGACCAAGCAGCAATTTTGATGAACGGACAGAATGCCAAGACCAATTTTCCGATATCAGACAACAATTCCGACCAAGAAACGAAACCTGCCACCGACCAAAACACTCCATGGTCTCCGAAAGCACTTTCCGAGCTGCTCAGCGCCAAGCTCAGGAAATGCTGCAAAGACCCATCTCCCTCCCTCACTTGCCTGAGACTCGACAATGACAATTCCGACATTGGGGTCTGGCAGAAGCGCCCTGCTGGATCGCGGGCGAGCTCCAATTGGGTCATGAGGATTGAGCTTGGGAAGAAGAAGAATCAGAGTTCTGATCATGATCATCAAGAGGAATCACTGTCATCCTTGACGTCATCGTCAATGGTGGGGTTGACTGAGGGTGGAATGAGTGAGGCAGATCAGGATGAAGAGGATAAACTTGCAATGCAGATGATAGAGGAGTTGCTGAATTGGAATTATCCAATACCTTCAGCCACAAGTAATGTTCACGAAGGAAATAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

286

Amino Acids

32.16

Weight (kDa)

6.32

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	78 - 127	2.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11190 AT5G25390 AT5G25390
fragaria_vesca	FvH4_2g29150
malus_domestica	MD08G1149200.v1.1 MD15G1124900.v1.1
prunus_persica	Prupe.1G480400_v2.0.a1
pyrus_communis	pycom08g12560 pycom15g11250
rosa_chinensis	RchiOBHm_Chr6g0298011
rosa_laevigata	RLG00000011543
rosa_multiflora	Rmu_sc0002800.1_g000022
rosa_roxburghii	Rroxscaffold_7G00170000 Rroxscaffold_7G00178830
rosa_rugosa	Rorug06G0278000
rosa_samantha	Rh6AG388300 Rh6BG396500 Rh6CG402500 Rh6DG388700
rosa_wichuraiana	Rw6G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AarI	CACCTGC	1 cut(s)	40
AasI	GACNNNNNNGTC	2 cut(s)	575, 706
AatII	GACGTC	1 cut(s)	704
Acc36I	ACCTGC	2 cut(s)	40, 448
AccII	CGCG	1 cut(s)	604
AciI	CCGC	2 cut(s)	70, 604
AclWI	GGATC	1 cut(s)	607
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	2 cut(s)	317, 804
AcyI	GRCGYC	1 cut(s)	701
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	504, 573
AluBI	AGCT	4 cut(s)	487, 502, 612, 637
AluI	AGCT	4 cut(s)	487, 502, 612, 637
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	3 cut(s)	320, 471, 541
AlwI	GGATC	1 cut(s)	607
ApeKI	GCWGC	6 cut(s)	250, 338, 341, 362, 487, 513
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	3 cut(s)	255, 497, 591
AsuHPI	GGTGA	2 cut(s)	64, 106
AxyI	CCTNAGG	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	266, 614
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	6 cut(s)	262, 350, 353, 374, 474, 500
BccI	CCATC	1 cut(s)	532
BclI	TGATCA	2 cut(s)	664, 670
BcoDI	GTCTC	3 cut(s)	320, 471, 541
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	3 cut(s)	256, 498, 592
BfuAI	ACCTGC	2 cut(s)	40, 448
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	6 cut(s)	251, 339, 342, 363, 488, 514
BlpI	GCTNAGC	1 cut(s)	491
BlsI	GCNGC	6 cut(s)	252, 340, 343, 364, 489, 515
Bpu10I	CCTNAGC	1 cut(s)	503
Bpu1102I	GCTNAGC	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 573
Bse1I	ACTGG	2 cut(s)	24, 256
Bse21I	CCTNAGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	780
Bse8I	GATNNNNATC	1 cut(s)	669
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	2 cut(s)	692, 760
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	2 cut(s)	504, 573
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	5 cut(s)	30, 505, 517, 536, 717
BseNI	ACTGG	2 cut(s)	24, 256
BseRI	GAGGAG	3 cut(s)	255, 316, 803
BseXI	GCAGC	6 cut(s)	262, 350, 353, 374, 474, 500
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	504, 573
BsmAI	GTCTC	3 cut(s)	320, 471, 541
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	391
Bso31I	GGTCTC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	266, 614
Bsp143I	GATC	4 cut(s)	599, 664, 670, 748
Bsp1720I	GCTNAGC	1 cut(s)	491
Bsp19I	CCATGG	1 cut(s)	461
BspACI	CCGC	2 cut(s)	70, 604
BspCNI	CTCAG	5 cut(s)	31, 504, 516, 537, 718
BspFNI	CGCG	1 cut(s)	604
BspHI	TCATGA	2 cut(s)	624, 667
BspMI	ACCTGC	2 cut(s)	40, 448
BspPI	GGATC	1 cut(s)	607
BspTNI	GGTCTC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	24, 256
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	4 cut(s)	599, 664, 670, 748
BssNI	GRCGYC	1 cut(s)	701
BssT1I	CCWWGG	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	122, 690
Bst6I	CTCTTC	3 cut(s)	148, 293, 753
BstACI	GRCGYC	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	606, 610
BstDEI	CTNAG	5 cut(s)	39, 491, 503, 545, 726
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	692, 760
BstFNI	CGCG	1 cut(s)	604
BstH2I	RGCGCY	3 cut(s)	256, 498, 592
BstHHI	GCGC	3 cut(s)	255, 497, 591
BstKTI	GATC	4 cut(s)	602, 667, 673, 751
BstMAI	GTCTC	3 cut(s)	320, 471, 541
BstMBI	GATC	4 cut(s)	599, 664, 670, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 338, 347
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	6 cut(s)	262, 350, 353, 374, 474, 500
Bsu36I	CCTNAGG	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	2 cut(s)	692, 760
BtsIMutI	CAGTG	2 cut(s)	263, 686
BveI	ACCTGC	2 cut(s)	40, 448
Cac8I	GCNNGC	2 cut(s)	606, 610
CciI	TCATGA	2 cut(s)	624, 667
CfoI	GCGC	3 cut(s)	255, 497, 591
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	4 cut(s)	217, 462, 625, 668
CviJI	RGCY	7 cut(s)	264, 313, 487, 502, 612, 637, 824
CviKI_1	RGCY	7 cut(s)	264, 313, 487, 502, 612, 637, 824
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	5 cut(s)	39, 491, 503, 545, 726
DpnI	GATC	4 cut(s)	601, 666, 672, 750
DpnII	GATC	4 cut(s)	599, 664, 670, 748
DrdI	GACNNNNNNGTC	2 cut(s)	575, 706
DseDI	GACNNNNNNGTC	2 cut(s)	575, 706
Eam1104I	CTCTTC	3 cut(s)	148, 293, 753
EarI	CTCTTC	3 cut(s)	148, 293, 753
Ecl136II	GAGCTC	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	461
Eco24I	GRGCYC	2 cut(s)	266, 614
Eco31I	GGTCTC	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	612
Eco57I	CTGAAG	2 cut(s)	317, 804
Eco81I	CCTNAGG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	2 cut(s)	266, 614
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	4 cut(s)	220, 465, 628, 671
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	4 cut(s)	216, 461, 624, 667
FauI	CCCGC	2 cut(s)	77, 597
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	2 cut(s)	664, 670
Fnu4HI	GCNGC	6 cut(s)	251, 339, 342, 363, 488, 514
FokI	GGATG	2 cut(s)	679, 767
FriOI	GRGCYC	2 cut(s)	266, 614
Fsp4HI	GCNGC	6 cut(s)	251, 339, 342, 363, 488, 514
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	3 cut(s)	254, 496, 590
GluI	GCNGC	6 cut(s)	251, 339, 342, 363, 488, 514
HaeII	RGCGCY	3 cut(s)	256, 498, 592
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	3 cut(s)	255, 497, 591
Hin1I	GRCGYC	1 cut(s)	701
Hin1II	CATG	4 cut(s)	220, 465, 628, 671
Hin6I	GCGC	3 cut(s)	253, 495, 589
HinP1I	GCGC	3 cut(s)	253, 495, 589
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HinfI	GANTC	4 cut(s)	243, 549, 652, 683
HphI	GGTGA	2 cut(s)	64, 106
Hpy166II	GTNNAC	2 cut(s)	723, 838
Hpy188III	TCNNGA	7 cut(s)	32, 505, 625, 668, 677, 752, 839
Hpy8I	GTNNAC	2 cut(s)	723, 838
HpyAV	CCTTC	3 cut(s)	157, 828, 836
HpyCH4III	ACNGT	2 cut(s)	122, 690
HpyCH4IV	ACGT	2 cut(s)	320, 701
HpyCH4V	TGCA	5 cut(s)	49, 109, 516, 773, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 338, 347
HpyF3I	CTNAG	5 cut(s)	39, 491, 503, 545, 726
HpySE526I	ACGT	2 cut(s)	320, 701
Hsp92I	GRCGYC	1 cut(s)	701
Hsp92II	CATG	4 cut(s)	220, 465, 628, 671
HspAI	GCGC	3 cut(s)	253, 495, 589
Ksp22I	TGATCA	2 cut(s)	664, 670
Kzo9I	GATC	4 cut(s)	599, 664, 670, 748
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	6 cut(s)	262, 350, 353, 374, 474, 500
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	2 cut(s)	320, 701
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	4 cut(s)	601, 666, 672, 750
MboI	GATC	4 cut(s)	599, 664, 670, 748
MboII	GAAGA	6 cut(s)	135, 310, 655, 658, 661, 770
MfeI	CAATTG	1 cut(s)	616
MhlI	GDGCHC	2 cut(s)	266, 614
MluCI	AATT	8 cut(s)	279, 366, 397, 418, 562, 616, 799, 805
MlyI	GAGTC	2 cut(s)	252, 543
MmeI	TCCRAC	3 cut(s)	125, 447, 591
MseI	TTAA	1 cut(s)	856
MunI	CAATTG	1 cut(s)	616
Mva1269I	GAATGC	1 cut(s)	391
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	3 cut(s)	261, 338, 347
NcoI	CCATGG	1 cut(s)	461
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	4 cut(s)	599, 664, 670, 748
NlaIII	CATG	4 cut(s)	220, 465, 628, 671
NmuCI	GTSAC	1 cut(s)	112
PagI	TCATGA	2 cut(s)	624, 667
PaqCI	CACCTGC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	652, 683
PkrI	GCNGC	6 cut(s)	252, 340, 343, 364, 489, 515
PleI	GAGTC	2 cut(s)	251, 543
PpsI	GAGTC	2 cut(s)	251, 543
PsiI	TTATAA	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	614
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	856
SatI	GCNGC	6 cut(s)	251, 339, 342, 363, 488, 514
Sau3AI	GATC	4 cut(s)	599, 664, 670, 748
SchI	GAGTC	2 cut(s)	252, 543
SduI	GDGCHC	2 cut(s)	266, 614
SfcI	CTRYAG	1 cut(s)	90
Sse9I	AATT	8 cut(s)	279, 366, 397, 418, 562, 616, 799, 805
SsiI	CCGC	2 cut(s)	70, 604
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	614
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	2 cut(s)	122, 690
TaiI	ACGT	2 cut(s)	323, 704
TaqI	TCGA	1 cut(s)	552
TasI	AATT	8 cut(s)	279, 366, 397, 418, 562, 616, 799, 805
TfiI	GAWTC	2 cut(s)	652, 683
Tru1I	TTAA	1 cut(s)	856
Tru9I	TTAA	1 cut(s)	856
TscAI	CASTG	2 cut(s)	263, 693
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	6 cut(s)	250, 338, 341, 362, 487, 513
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	139, 389, 771
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	263, 693
XapI	RAATTY	1 cut(s)	279
XspI	CTAG	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.