Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010712

Physical Location & Seq

Genomic Coordinates Reverse (-)

11032275 .. 11033020

Gene Structure 746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTACAATCAAGGAAGTTCAGAGGAGTCAGGCAGCGACAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGGAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGACCAAGCAGCAATTTTGATGAACGGACAGAATGCCAAGACTAATTTTCCGATATTGAACAACAACAATTCCGACCAAGACACGAAATCCCCCACGGACCAAGACACCCCATGGTCTCCAAAAGCACTTTCCGAGCTACTCAGGGCCAAGCTCAGAAAATGCTGCAAAGACCAATCGCCCTCCCTCACTTGCCTTCGACTCGACAATGACAATTCCCACATCGGGGTCTGGCAGAAGCGCCCGTCCGGATCGCGGGCGAGCTCTAATTGGGTCATGAGGATTGAGCTTGGGAAGAAGAAGAAGCAGGGTTCTAATAAACCAGATCGATCATCAAGAGGAATTGATGTCGTCCTTGTCATCGTCGTCGAGTTCATCGTCAATGGTGGGGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

178

Amino Acids

20.0

Weight (kDa)

10.17

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 55	1.1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11190 AT5G25390 AT5G25390
fragaria_vesca	FvH4_2g29150
malus_domestica	MD08G1149200.v1.1 MD15G1124900.v1.1
prunus_persica	Prupe.1G480400_v2.0.a1
pyrus_communis	pycom08g12560 pycom15g11250
rosa_chinensis	RchiOBHm_Chr6g0298011
rosa_laevigata	RLG00000011543
rosa_multiflora	Rmu_sc0002800.1_g000022
rosa_roxburghii	Rroxscaffold_7G00170000 Rroxscaffold_7G00178830
rosa_rugosa	Rorug06G0278000
rosa_samantha	Rh6AG388300 Rh6BG396500 Rh6CG402500 Rh6DG388700
rosa_wichuraiana	Rw6G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	391
AccIII	TCCGGA	1 cut(s)	383
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	3 cut(s)	360, 361, 390
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	4 cut(s)	274, 289, 399, 424
AluI	AGCT	4 cut(s)	274, 289, 399, 424
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	2 cut(s)	104, 258
AlwI	GGATC	1 cut(s)	394
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	5 cut(s)	34, 122, 125, 146, 300
ApoI	RAATTY	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	235, 282
AvaII	GGWCC	1 cut(s)	235
BanII	GRGCYC	2 cut(s)	50, 401
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	5 cut(s)	46, 134, 137, 158, 287
BcoDI	GTCTC	2 cut(s)	104, 258
BfaI	CTAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
BlsI	GCNGC	5 cut(s)	36, 124, 127, 148, 302
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	235, 282
Bsa29I	ATCGAT	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	231, 248
BsaWI	WCCGGW	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 361, 390
BseAI	TCCGGA	1 cut(s)	383
BseCI	ATCGAT	1 cut(s)	463
BseDI	CCNNGG	2 cut(s)	231, 248
BseLI	CCNNNNNNNGG	3 cut(s)	360, 361, 390
BseMII	CTCAG	2 cut(s)	292, 304
BseRI	GAGGAG	2 cut(s)	39, 100
BseXI	GCAGC	5 cut(s)	46, 134, 137, 158, 287
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	284
BshVI	ATCGAT	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	360, 361, 390
BsmAI	GTCTC	2 cut(s)	104, 258
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	50, 401
Bsp13I	TCCGGA	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	386, 460, 464
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	291, 303
BspDI	ATCGAT	1 cut(s)	463
BspEI	TCCGGA	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	411
BspPI	GGATC	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	231, 248
BssMI	GATC	3 cut(s)	386, 460, 464
BssT1I	CCWWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	393, 397
BstDEI	CTNAG	2 cut(s)	278, 290
BstDSI	CCRYGG	2 cut(s)	231, 248
BstFNI	CGCG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	389, 463, 467
BstMAI	GTCTC	2 cut(s)	104, 258
BstMBI	GATC	3 cut(s)	386, 460, 464
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 131
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	5 cut(s)	46, 134, 137, 158, 287
Bsu15I	ATCGAT	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	284
BsuTUI	ATCGAT	1 cut(s)	463
BtgI	CCRYGG	2 cut(s)	231, 248
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	393, 397
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	235, 282
ClaI	ATCGAT	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	2 cut(s)	249, 412
CviJI	RGCY	7 cut(s)	48, 97, 274, 284, 289, 399, 424
CviKI_1	RGCY	7 cut(s)	48, 97, 274, 284, 289, 399, 424
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	2 cut(s)	278, 290
DpnI	GATC	3 cut(s)	388, 462, 466
DpnII	GATC	3 cut(s)	386, 460, 464
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	248
Eco24I	GRGCYC	2 cut(s)	50, 401
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	248
EcoT38I	GRGCYC	2 cut(s)	50, 401
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	2 cut(s)	252, 415
FaiI	YATR	4 cut(s)	136, 138, 250, 413
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	2 cut(s)	248, 411
FauI	CCCGC	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
FriOI	GRGCYC	2 cut(s)	50, 401
Fsp4HI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	252, 415
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	2 cut(s)	27, 336
HpaII	CCGG	1 cut(s)	384
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	6 cut(s)	23, 61, 189, 211, 271, 293
Hpy188III	TCNNGA	3 cut(s)	384, 412, 471
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	2 cut(s)	503, 506
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 131
HpyF3I	CTNAG	2 cut(s)	278, 290
Hsp92II	CATG	2 cut(s)	252, 415
HspAI	GCGC	1 cut(s)	376
Kpn2I	TCCGGA	1 cut(s)	383
Kzo9I	GATC	3 cut(s)	386, 460, 464
LpnPI	CCDG	6 cut(s)	16, 265, 352, 397, 428, 471
Lsp1109I	GCAGC	5 cut(s)	46, 134, 137, 158, 287
MaeI	CTAG	1 cut(s)	98
MalI	GATC	3 cut(s)	388, 462, 466
MboI	GATC	3 cut(s)	386, 460, 464
MboII	GAAGA	4 cut(s)	94, 442, 445, 448
MhlI	GDGCHC	2 cut(s)	50, 401
MluCI	AATT	7 cut(s)	63, 150, 181, 205, 349, 403, 477
MlyI	GAGTC	2 cut(s)	36, 330
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	17, 78, 81, 112, 328, 332, 408, 467
MroI	TCCGGA	1 cut(s)	383
MspI	CCGG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	122, 131
NcoI	CCATGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	3 cut(s)	386, 460, 464
NlaIII	CATG	2 cut(s)	252, 415
PagI	TCATGA	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PctI	GAATGC	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	36, 124, 127, 148, 302
PleI	GAGTC	2 cut(s)	35, 330
PpsI	GAGTC	2 cut(s)	35, 330
Psp124BI	GAGCTC	1 cut(s)	401
PspPI	GGNCC	2 cut(s)	235, 282
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SacI	GAGCTC	1 cut(s)	401
SatI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
Sau3AI	GATC	3 cut(s)	386, 460, 464
Sau96I	GGNCC	2 cut(s)	235, 282
SchI	GAGTC	2 cut(s)	36, 330
SduI	GDGCHC	2 cut(s)	50, 401
SetI	ASST	4 cut(s)	276, 291, 401, 426
SinI	GGWCC	1 cut(s)	235
Sse9I	AATT	7 cut(s)	63, 150, 181, 205, 349, 403, 477
SsiI	CCGC	1 cut(s)	391
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	4 cut(s)	334, 339, 463, 504
TasI	AATT	7 cut(s)	63, 150, 181, 205, 349, 403, 477
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	5 cut(s)	34, 122, 125, 146, 300
TspDTI	ATGAA	2 cut(s)	173, 499
TspGWI	ACGGA	2 cut(s)	177, 248
TspRI	CASTG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	63
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.