Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010712

Physical Location & Seq

Genomic Coordinates Reverse (-)

7591608 .. 7592594

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCTATACTCTTCCCTCATCACTCTAAAATCTCATATCTCAAAAACTCTCTGTGGACATTTCTCAAAAATCATAAAAACATGGTACAAACAAGGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGGAGGGTGTGGCTTGGGACATTTGAGACAGCAGAGGCAGCAGCAAGAGCTTATGACCAAGCAGCAATTTTGATGAACGGACAGAATGCCAAGACCAATTTTCCGATATCAAACAACAATTCCGACCAAGAAACGAAACCTGCCACCGACCAAAACACTCCATGGTCTCCGAAAGCACTTTCCGAGCTGCTCAGCGCCAAGCTCAGGAAATGCTGCAAAGACCCATCTCCCTCCCTCACTTGCCTGAGACTCGACAATGACAATTCCGACATTGGGGTCTGGCAGAAGCGCCCTGCTGGATCGCGGGCGAGCTCCAATTGGGTCATGAGGATTGAGCTTGGGAAGAAGAAGAAGCAGAGTTCTGATCATGATCATCAAGAGGAATCACTGTCGTCCTTGACGTCATCGTCAAGTTCATCGTCAATGGTGGGGTTGATTGAGGGTGGAATGAGTGAGGCAGATCAGGATGAAGAGGATAAACTTGCAATGCAGATGATAGAGGAGTTGCTGAATTGGAATTATCCAATGCCTTCAGCCACAAGTAATGTTCACGAAGGAAATAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

245

Amino Acids

27.59

Weight (kDa)

8.93

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	33 - 82	2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11190 AT5G25390 AT5G25390
fragaria_vesca	FvH4_2g29150
malus_domestica	MD08G1149200.v1.1 MD15G1124900.v1.1
prunus_persica	Prupe.1G480400_v2.0.a1
pyrus_communis	pycom08g12560 pycom15g11250
rosa_chinensis	RchiOBHm_Chr6g0298011
rosa_laevigata	RLG00000011543
rosa_multiflora	Rmu_sc0002800.1_g000022
rosa_roxburghii	Rroxscaffold_7G00170000 Rroxscaffold_7G00178830
rosa_rugosa	Rorug06G0278000
rosa_samantha	Rh6AG388300 Rh6BG396500 Rh6CG402500 Rh6DG388700
rosa_wichuraiana	Rw6G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	440, 571
AatII	GACGTC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	313
AccII	CGCG	1 cut(s)	469
AciI	CCGC	1 cut(s)	469
AclWI	GGATC	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	2 cut(s)	182, 681
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	369, 438
AluBI	AGCT	5 cut(s)	215, 352, 367, 477, 502
AluI	AGCT	5 cut(s)	215, 352, 367, 477, 502
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	3 cut(s)	185, 336, 406
AlwI	GGATC	1 cut(s)	472
ApeKI	GCWGC	6 cut(s)	115, 203, 206, 227, 352, 378
ApoI	RAATTY	1 cut(s)	144
AspLEI	GCGC	3 cut(s)	120, 362, 456
BanII	GRGCYC	2 cut(s)	131, 479
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	6 cut(s)	127, 215, 218, 239, 339, 365
BccI	CCATC	1 cut(s)	397
BclI	TGATCA	2 cut(s)	529, 535
BcoDI	GTCTC	3 cut(s)	185, 336, 406
BfoI	RGCGCY	3 cut(s)	121, 363, 457
BfuAI	ACCTGC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	6 cut(s)	116, 204, 207, 228, 353, 379
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	6 cut(s)	117, 205, 208, 229, 354, 380
Bpu10I	CCTNAGC	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 438
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	637
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	369, 438
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	3 cut(s)	370, 382, 401
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	3 cut(s)	120, 181, 680
BseXI	GCAGC	6 cut(s)	127, 215, 218, 239, 339, 365
Bsh1236I	CGCG	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	369, 438
BsmAI	GTCTC	3 cut(s)	185, 336, 406
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	256
Bso31I	GGTCTC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	131, 479
Bsp143I	GATC	4 cut(s)	464, 529, 535, 625
Bsp1720I	GCTNAGC	1 cut(s)	356
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	1 cut(s)	469
BspCNI	CTCAG	3 cut(s)	369, 381, 402
BspFNI	CGCG	1 cut(s)	469
BspHI	TCATGA	2 cut(s)	489, 532
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	4 cut(s)	464, 529, 535, 625
BssNI	GRCGYC	1 cut(s)	566
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	3 cut(s)	17, 158, 630
BstACI	GRCGYC	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	471, 475
BstDEI	CTNAG	3 cut(s)	356, 368, 410
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	637
BstFNI	CGCG	1 cut(s)	469
BstH2I	RGCGCY	3 cut(s)	121, 363, 457
BstHHI	GCGC	3 cut(s)	120, 362, 456
BstKTI	GATC	4 cut(s)	467, 532, 538, 628
BstMAI	GTCTC	3 cut(s)	185, 336, 406
BstMBI	GATC	4 cut(s)	464, 529, 535, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 203, 212
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	6 cut(s)	127, 215, 218, 239, 339, 365
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	128, 551
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	471, 475
CciI	TCATGA	2 cut(s)	489, 532
CfoI	GCGC	3 cut(s)	120, 362, 456
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	4 cut(s)	82, 327, 490, 533
CviJI	RGCY	8 cut(s)	129, 178, 215, 352, 367, 477, 502, 701
CviKI_1	RGCY	8 cut(s)	129, 178, 215, 352, 367, 477, 502, 701
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	3 cut(s)	356, 368, 410
DpnI	GATC	4 cut(s)	466, 531, 537, 627
DpnII	GATC	4 cut(s)	464, 529, 535, 625
DrdI	GACNNNNNNGTC	2 cut(s)	440, 571
DseDI	GACNNNNNNGTC	2 cut(s)	440, 571
Eam1104I	CTCTTC	3 cut(s)	17, 158, 630
EarI	CTCTTC	3 cut(s)	17, 158, 630
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	326
Eco24I	GRGCYC	2 cut(s)	131, 479
Eco31I	GGTCTC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	182, 681
EcoICRI	GAGCTC	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	2 cut(s)	131, 479
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	4 cut(s)	85, 330, 493, 536
FaiI	YATR	8 cut(s)	8, 37, 75, 83, 219, 328, 491, 534
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	4 cut(s)	81, 326, 489, 532
FauI	CCCGC	1 cut(s)	462
FbaI	TGATCA	2 cut(s)	529, 535
Fnu4HI	GCNGC	6 cut(s)	116, 204, 207, 228, 353, 379
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	2 cut(s)	131, 479
Fsp4HI	GCNGC	6 cut(s)	116, 204, 207, 228, 353, 379
GlaI	GCGC	3 cut(s)	119, 361, 455
GluI	GCNGC	6 cut(s)	116, 204, 207, 228, 353, 379
HaeII	RGCGCY	3 cut(s)	121, 363, 457
HhaI	GCGC	3 cut(s)	120, 362, 456
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	4 cut(s)	85, 330, 493, 536
Hin6I	GCGC	3 cut(s)	118, 360, 454
HinP1I	GCGC	3 cut(s)	118, 360, 454
HinfI	GANTC	3 cut(s)	108, 414, 548
Hpy166II	GTNNAC	2 cut(s)	57, 715
Hpy188I	TCNGA	8 cut(s)	104, 142, 270, 289, 336, 349, 433, 529
Hpy188III	TCNNGA	6 cut(s)	370, 490, 533, 542, 629, 716
Hpy8I	GTNNAC	2 cut(s)	57, 715
HpyAV	CCTTC	2 cut(s)	705, 713
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	3 cut(s)	381, 650, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 203, 212
HpyF3I	CTNAG	3 cut(s)	356, 368, 410
HpySE526I	ACGT	1 cut(s)	566
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	4 cut(s)	85, 330, 493, 536
HspAI	GCGC	3 cut(s)	118, 360, 454
Ksp22I	TGATCA	2 cut(s)	529, 535
Kzo9I	GATC	4 cut(s)	464, 529, 535, 625
LmnI	GCTCC	1 cut(s)	482
LpnPI	CCDG	9 cut(s)	97, 134, 318, 355, 422, 430, 447, 471, 614
Lsp1109I	GCAGC	6 cut(s)	127, 215, 218, 239, 339, 365
MaeII	ACGT	1 cut(s)	566
MalI	GATC	4 cut(s)	466, 531, 537, 627
MboI	GATC	4 cut(s)	464, 529, 535, 625
MboII	GAAGA	6 cut(s)	4, 175, 520, 523, 526, 647
MfeI	CAATTG	1 cut(s)	481
MhlI	GDGCHC	2 cut(s)	131, 479
MluCI	AATT	8 cut(s)	144, 231, 262, 283, 427, 481, 676, 682
MlyI	GAGTC	2 cut(s)	117, 408
MmeI	TCCRAC	2 cut(s)	312, 456
MseI	TTAA	1 cut(s)	733
MunI	CAATTG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	256
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	3 cut(s)	126, 203, 212
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	464, 529, 535, 625
NlaIII	CATG	4 cut(s)	85, 330, 493, 536
PagI	TCATGA	2 cut(s)	489, 532
PcsI	WCGNNNNNNNCGW	1 cut(s)	563
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	6 cut(s)	117, 205, 208, 229, 354, 380
PleI	GAGTC	2 cut(s)	116, 408
PpsI	GAGTC	2 cut(s)	116, 408
Psp124BI	GAGCTC	1 cut(s)	479
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	733
SatI	GCNGC	6 cut(s)	116, 204, 207, 228, 353, 379
Sau3AI	GATC	4 cut(s)	464, 529, 535, 625
SchI	GAGTC	2 cut(s)	117, 408
SduI	GDGCHC	2 cut(s)	131, 479
SetI	ASST	7 cut(s)	217, 307, 354, 369, 479, 504, 569
Sse9I	AATT	8 cut(s)	144, 231, 262, 283, 427, 481, 676, 682
SsiI	CCGC	1 cut(s)	469
SspI	AATATT	1 cut(s)	730
SstI	GAGCTC	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	555
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	1 cut(s)	417
TasI	AATT	8 cut(s)	144, 231, 262, 283, 427, 481, 676, 682
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	1 cut(s)	733
Tru9I	TTAA	1 cut(s)	733
TscAI	CASTG	2 cut(s)	128, 558
TseI	GCWGC	6 cut(s)	115, 203, 206, 227, 352, 378
TspDTI	ATGAA	3 cut(s)	254, 570, 648
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	128, 558
XapI	RAATTY	1 cut(s)	144
ZraI	GACGTC	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.