Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010712

Physical Location & Seq

Genomic Coordinates Reverse (-)

40131074 .. 40132425

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G480400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTACAGTCCAGAAAGTTCAGAGGAGTGAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTTTACTTAAGAGGAGGGTGTGGCTCGGGACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGACCAAGCAGCCATATTGATGAATGGACAAAATGCCAAGACCAATTTCCCCACCTCAAATAACAACAACAGCTCTGGTCAAGACACAAAGCCCACTAACCAAGACTCTCCATGGTCTCCCAAGGCACTTTCAGAGCTGCTCAACTCCAAGCTCAGAAAATGCTGCAAAGACCCATCTCCCTCCCTCACTTGCCTGAGGCTTGACAATGACAATTCTCACATTGGGGTGTGGCAGAAGCGCCCTGCCGGATCGCGGGCAAGCTCGAATTGGGTCATGAGGATCGAGCTTGGCAAGAAAAAGAAACACATTTCTGATCATCATGGATCCATGTGCTCCTCATCCTCCTCCTCATCCTCCTCATCCTTTTCGTCATCGACGAGTTCATCAATGGTGGGATTGATTGAGGCTGGAATGAGTGAAGCAGATCAGGATGAAGAGGATAAGCTTGCAATGCAGATGATAGAAGAGTTACTTAATTGGAATTATCCAATTCCTTCACCAACAAGTAATGTTCAAGAAGGAAATATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

224

Amino Acids

24.76

Weight (kDa)

9.1

Isoelectric Point (pI)

68.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11190 AT5G25390 AT5G25390
fragaria_vesca	FvH4_2g29150
malus_domestica	MD08G1149200.v1.1 MD15G1124900.v1.1
prunus_persica	Prupe.1G480400_v2.0.a1
pyrus_communis	pycom08g12560 pycom15g11250
rosa_chinensis	RchiOBHm_Chr6g0298011
rosa_laevigata	RLG00000011543
rosa_multiflora	Rmu_sc0002800.1_g000022
rosa_roxburghii	Rroxscaffold_7G00170000 Rroxscaffold_7G00178830
rosa_rugosa	Rorug06G0278000
rosa_samantha	Rh6AG388300 Rh6BG396500 Rh6CG402500 Rh6DG388700
rosa_wichuraiana	Rw6G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	391
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	4 cut(s)	394, 425, 456, 469
AcsI	RAATTY	1 cut(s)	63
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	653
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	6 cut(s)	210, 274, 289, 399, 424, 583
AluI	AGCT	6 cut(s)	210, 274, 289, 399, 424, 583
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	104, 258
AlwI	GGATC	4 cut(s)	394, 425, 456, 469
Ama87I	CYCGRG	1 cut(s)	98
ApeKI	GCWGC	6 cut(s)	34, 122, 125, 146, 274, 300
ApoI	RAATTY	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	39, 378
AsuHPI	GGTGA	1 cut(s)	627
AvaI	CYCGRG	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	6 cut(s)	46, 134, 137, 158, 261, 287
BccI	CCATC	2 cut(s)	78, 319
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	104, 258
BfoI	RGCGCY	2 cut(s)	40, 379
BfrI	CTTAAG	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	6 cut(s)	35, 123, 126, 147, 275, 301
BlsI	GCNGC	6 cut(s)	36, 124, 127, 148, 276, 302
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	248, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	40
Bse21I	CCTNAGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	248, 258
BseGI	GGATG	5 cut(s)	70, 476, 488, 497, 574
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	304, 323
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	6 cut(s)	39, 100, 463, 472, 475, 484
BseXI	GCAGC	6 cut(s)	46, 134, 137, 158, 261, 287
Bsh1236I	CGCG	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	2 cut(s)	104, 258
BsmFI	GGGAC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	50, 473
Bsp143I	GATC	5 cut(s)	386, 417, 451, 461, 562
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	303, 324
BspFNI	CGCG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	463
BspPI	GGATC	4 cut(s)	394, 425, 456, 469
BspTI	CTTAAG	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	248, 258
BssMI	GATC	5 cut(s)	386, 417, 451, 461, 562
BssT1I	CCWWGG	2 cut(s)	248, 258
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	2 cut(s)	567, 597
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	393, 397, 585
BstDEI	CTNAG	2 cut(s)	290, 332
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	5 cut(s)	70, 476, 488, 497, 574
BstFNI	CGCG	1 cut(s)	391
BstH2I	RGCGCY	2 cut(s)	40, 379
BstHHI	GCGC	2 cut(s)	39, 378
BstKTI	GATC	5 cut(s)	389, 420, 454, 464, 565
BstMAI	GTCTC	2 cut(s)	104, 258
BstMBI	GATC	5 cut(s)	386, 417, 451, 461, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 589
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	6 cut(s)	46, 134, 137, 158, 261, 287
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	5 cut(s)	70, 476, 488, 497, 574
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	3 cut(s)	393, 397, 585
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	2 cut(s)	39, 378
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	4 cut(s)	249, 412, 458, 466
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	2 cut(s)	290, 332
DpnI	GATC	5 cut(s)	388, 419, 453, 463, 564
DpnII	GATC	5 cut(s)	386, 417, 451, 461, 562
Eam1104I	CTCTTC	2 cut(s)	567, 597
EarI	CTCTTC	2 cut(s)	567, 597
Eco130I	CCWWGG	2 cut(s)	248, 258
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	258
Eco81I	CCTNAGG	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	248, 258
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	248, 258
FaeI	CATG	4 cut(s)	252, 415, 461, 469
FaiI	YATR	7 cut(s)	136, 138, 152, 250, 413, 459, 467
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	248, 411, 457, 465
FauI	CCCGC	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	6 cut(s)	35, 123, 126, 147, 275, 301
FokI	GGATG	5 cut(s)	57, 463, 475, 484, 581
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	6 cut(s)	35, 123, 126, 147, 275, 301
GlaI	GCGC	2 cut(s)	38, 377
GluI	GCNGC	6 cut(s)	35, 123, 126, 147, 275, 301
HaeII	RGCGCY	2 cut(s)	40, 379
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	2 cut(s)	39, 378
Hin1II	CATG	4 cut(s)	252, 415, 461, 469
Hin6I	GCGC	2 cut(s)	37, 376
HinP1I	GCGC	2 cut(s)	37, 376
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	1 cut(s)	627
Hpy188I	TCNGA	5 cut(s)	23, 61, 271, 293, 451
Hpy188III	TCNNGA	6 cut(s)	12, 100, 218, 412, 566, 653
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	2 cut(s)	642, 650
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	303, 587, 592
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 589
HpyF3I	CTNAG	2 cut(s)	290, 332
Hsp92II	CATG	4 cut(s)	252, 415, 461, 469
HspAI	GCGC	2 cut(s)	37, 376
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	5 cut(s)	386, 417, 451, 461, 562
LmnI	GCTCC	1 cut(s)	476
LpnPI	CCDG	8 cut(s)	25, 53, 198, 344, 393, 397, 531, 551
Lsp1109I	GCAGC	6 cut(s)	46, 134, 137, 158, 261, 287
MaeIII	GTNAC	1 cut(s)	606
MalI	GATC	5 cut(s)	388, 419, 453, 463, 564
MboI	GATC	5 cut(s)	386, 417, 451, 461, 562
MboII	GAAGA	2 cut(s)	584, 614
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	2 cut(s)	50, 473
MluCI	AATT	7 cut(s)	63, 181, 349, 403, 613, 619, 627
MlyI	GAGTC	1 cut(s)	236
MseI	TTAA	3 cut(s)	81, 612, 670
MslI	CAYNNNNRTG	2 cut(s)	155, 362
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 589
NcoI	CCATGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	5 cut(s)	386, 417, 451, 461, 562
NlaIII	CATG	4 cut(s)	252, 415, 461, 469
NlaIV	GGNNCC	1 cut(s)	463
PagI	TCATGA	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PkrI	GCNGC	6 cut(s)	36, 124, 127, 148, 276, 302
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	2 cut(s)	155, 362
SaqAI	TTAA	3 cut(s)	81, 612, 670
SatI	GCNGC	6 cut(s)	35, 123, 126, 147, 275, 301
Sau3AI	GATC	5 cut(s)	386, 417, 451, 461, 562
SchI	GAGTC	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	50, 473
SetI	ASST	7 cut(s)	194, 212, 276, 291, 401, 426, 585
SmiMI	CAYNNNNRTG	2 cut(s)	155, 362
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	7 cut(s)	63, 181, 349, 403, 613, 619, 627
SsiI	CCGC	1 cut(s)	391
SspI	AATATT	1 cut(s)	664
StyI	CCWWGG	2 cut(s)	248, 258
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	401, 420, 512
TasI	AATT	7 cut(s)	63, 181, 349, 403, 613, 619, 627
Tru1I	TTAA	3 cut(s)	81, 612, 670
Tru9I	TTAA	3 cut(s)	81, 612, 670
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	6 cut(s)	34, 122, 125, 146, 274, 300
TspDTI	ATGAA	3 cut(s)	173, 510, 585
TspRI	CASTG	1 cut(s)	47
Vha464I	CTTAAG	1 cut(s)	80
XapI	RAATTY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.