Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010712

Physical Location & Seq

Genomic Coordinates Reverse (-)

15114633 .. 15115957

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1149200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTACAATCAAGGAAGTTCAGAGGAGTCAGGCAGCGACAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCATTACTTAAGAGGAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGACCAAGCAGCAATTTTGATGAACGGACAGAATGCCAAGACCAATTTTCCGATATTGAACAACAACAATTCCGACCAAGACACGAAATCCCCCACTGACCAAGACACCCCATGGTCTCCAAAAGCACTTTCCGAGCTACTCAGGGCCAAGCTCAGAAAATGCTGCAAAGACCAATCGCCCTCCCTGACTTGCCTTCGACTCGACAATGACAATTCCCATATTGGGGTCTGGCAGAAGCGCCCGGCCGGATCGCGGGCGAGCTCCAATTGGGTCATGAGGATTGAGCTTGGGAAGAAGAAGAAGCAGGGTTCTAATCATGATAATCAAGAGGAATTGATGTCGTCCTTGTCATCGTCGTCGAGTTCATCGTCAATGGTGGGGTTGACTGAGGGTGGAGTGAGTGTGGTAGAACCGGATGAAGAGGATAAACTTGCAATGCAGATGATAGAAGAGTTGCTGAATTGGAATTATCCAACGCCTCCACCCACAGGTAATGTTCAAGAAGGAAACAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

219

Amino Acids

24.44

Weight (kDa)

8.77

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 55	1.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11190 AT5G25390 AT5G25390
fragaria_vesca	FvH4_2g29150
malus_domestica	MD08G1149200.v1.1 MD15G1124900.v1.1
prunus_persica	Prupe.1G480400_v2.0.a1
pyrus_communis	pycom08g12560 pycom15g11250
rosa_chinensis	RchiOBHm_Chr6g0298011
rosa_laevigata	RLG00000011543
rosa_multiflora	Rmu_sc0002800.1_g000022
rosa_roxburghii	Rroxscaffold_7G00170000 Rroxscaffold_7G00178830
rosa_rugosa	Rorug06G0278000
rosa_samantha	Rh6AG388300 Rh6BG396500 Rh6CG402500 Rh6DG388700
rosa_wichuraiana	Rw6G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	391
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	63
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	4 cut(s)	360, 361, 390, 626
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	196, 638
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	4 cut(s)	274, 289, 399, 424
AluI	AGCT	4 cut(s)	274, 289, 399, 424
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	2 cut(s)	104, 258
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	2 cut(s)	282, 381
ApeKI	GCWGC	5 cut(s)	34, 122, 125, 146, 300
ApoI	RAATTY	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	50, 401
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	5 cut(s)	46, 134, 137, 158, 287
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	104, 258
BfaI	CTAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	379
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
BlsI	GCNGC	5 cut(s)	36, 124, 127, 148, 302
Bme1390I	CCNGG	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 361, 390, 626
Bse3DI	GCAATG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	4 cut(s)	360, 361, 390, 626
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	3 cut(s)	292, 304, 516
BseRI	GAGGAG	2 cut(s)	39, 100
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	5 cut(s)	46, 134, 137, 158, 287
Bsh1236I	CGCG	1 cut(s)	391
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	284, 383
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	3 cut(s)	380, 384, 551
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	4 cut(s)	360, 361, 390, 626
BsmAI	GTCTC	2 cut(s)	104, 258
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	284, 383
Bso31I	GGTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	50, 401
Bsp143I	GATC	1 cut(s)	386
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	2 cut(s)	284, 383
BspCNI	CTCAG	3 cut(s)	291, 303, 517
BspFNI	CGCG	1 cut(s)	391
BspHI	TCATGA	2 cut(s)	411, 454
BspPI	GGATC	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	579
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	552, 582
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	393, 397
BstDEI	CTNAG	3 cut(s)	278, 290, 525
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	389
BstMAI	GTCTC	2 cut(s)	104, 258
BstMBI	GATC	1 cut(s)	386
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 131
BstSCI	CCNGG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	5 cut(s)	46, 134, 137, 158, 287
BstZI	CGGCCG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	284, 383
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	47, 231
Cac8I	GCNNGC	2 cut(s)	393, 397
CciI	TCATGA	2 cut(s)	411, 454
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	3 cut(s)	249, 412, 455
CviJI	RGCY	8 cut(s)	48, 97, 274, 284, 289, 383, 399, 424
CviKI_1	RGCY	8 cut(s)	48, 97, 274, 284, 289, 383, 399, 424
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	3 cut(s)	278, 290, 525
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	552, 582
EarI	CTCTTC	2 cut(s)	552, 582
Ecl136II	GAGCTC	1 cut(s)	399
EclXI	CGGCCG	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	248
Eco24I	GRGCYC	2 cut(s)	50, 401
Eco31I	GGTCTC	1 cut(s)	258
Eco52I	CGGCCG	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	248
EcoT38I	GRGCYC	2 cut(s)	50, 401
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	3 cut(s)	252, 415, 458
FaiI	YATR	6 cut(s)	136, 138, 250, 357, 413, 456
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	248, 411, 454
FauI	CCCGC	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	2 cut(s)	50, 401
Fsp4HI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	284, 383
HapII	CCGG	3 cut(s)	380, 384, 551
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	252, 415, 458
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	2 cut(s)	27, 336
HpaII	CCGG	3 cut(s)	380, 384, 551
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	6 cut(s)	23, 61, 189, 211, 271, 293
Hpy188III	TCNNGA	4 cut(s)	412, 455, 464, 638
Hpy8I	GTNNAC	1 cut(s)	522
Hpy99I	CGWCG	2 cut(s)	496, 499
HpyAV	CCTTC	2 cut(s)	341, 635
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	303, 572, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 131
HpyF3I	CTNAG	3 cut(s)	278, 290, 525
Hsp92II	CATG	3 cut(s)	252, 415, 458
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	9 cut(s)	16, 265, 335, 352, 393, 397, 428, 564, 612
Lsp1109I	GCAGC	5 cut(s)	46, 134, 137, 158, 287
MaeI	CTAG	1 cut(s)	98
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	5 cut(s)	442, 445, 448, 569, 599
MfeI	CAATTG	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	50, 401
MluCI	AATT	9 cut(s)	63, 150, 181, 205, 349, 403, 470, 598, 604
MlyI	GAGTC	2 cut(s)	36, 330
MmeI	TCCRAC	2 cut(s)	234, 635
MseI	TTAA	2 cut(s)	81, 655
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	3 cut(s)	380, 384, 551
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	122, 131
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	3 cut(s)	252, 415, 458
PagI	TCATGA	2 cut(s)	411, 454
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PctI	GAATGC	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	36, 124, 127, 148, 302
PleI	GAGTC	2 cut(s)	35, 330
PpsI	GAGTC	2 cut(s)	35, 330
Psp124BI	GAGCTC	1 cut(s)	401
PspPI	GGNCC	1 cut(s)	282
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SacI	GAGCTC	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	81, 655
SatI	GCNGC	5 cut(s)	35, 123, 126, 147, 301
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	2 cut(s)	36, 330
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	2 cut(s)	50, 401
SetI	ASST	5 cut(s)	276, 291, 401, 426, 631
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	9 cut(s)	63, 150, 181, 205, 349, 403, 470, 598, 604
SsiI	CCGC	1 cut(s)	391
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	334, 339, 497
TasI	AATT	9 cut(s)	63, 150, 181, 205, 349, 403, 470, 598, 604
Tru1I	TTAA	2 cut(s)	81, 655
Tru9I	TTAA	2 cut(s)	81, 655
TscAI	CASTG	2 cut(s)	47, 238
TseI	GCWGC	5 cut(s)	34, 122, 125, 146, 300
TspDTI	ATGAA	3 cut(s)	173, 492, 570
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	47, 238
Vha464I	CTTAAG	1 cut(s)	80
XapI	RAATTY	1 cut(s)	63
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.