Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010712

Physical Location & Seq

Genomic Coordinates Forward (+)

58867938 .. 58870174

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG402500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGTACAGTCAAGGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCATTACTTAAGAGGAGGGTGTGGCTAGGCACATTTGAGACAGCTGAGGCAGCAGCAAGAGCATATGACCAAGCATCCATATTGATGAACGGTCAGAATGCCAAGACCAATTTTCCCAATAACAACCCACCATCTGATGATCAAGAAACTAAACCTACTGATCATCTTCCTCATGGTCATCAGCTTCCATGGGATCCCAAAGAACTTGCAGAGCTGCTCAGCTCCAAGCTCAAGAAGTGTTGCAAAGACCCATCTCCTTCCCTCACTTGTCTGAGACTCGACAACGACAATTCTCACATTGGAGTGTGGCAGAAGCGCCCCGCTGGATCACGCGCAAGCTCTAATTGGGTCATGAGAATTGAGCTGGGGAAGAAGGAGAAGCAATATAACACTACAGTTATTGAAAATGAAGGATCAACATCATCATCATCATATTTAATAAGTCAATCATCATCAGCTGGATCAATTACTAACGAGGCTGGAATTGCAATTGAAGAAGCTGATGAGGATCATGGTGAAGAGGATAAGCTTGCGATGCAAATGATAGAGGAATTACTCAACTGGAATAGTTATCCAATTCCTTCACCTACAAGTAATGTTCAAGAAGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

228

Amino Acids

25.57

Weight (kDa)

5.9

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 55	8.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11190 AT5G25390 AT5G25390
fragaria_vesca	FvH4_2g29150
malus_domestica	MD08G1149200.v1.1 MD15G1124900.v1.1
prunus_persica	Prupe.1G480400_v2.0.a1
pyrus_communis	pycom08g12560 pycom15g11250
rosa_chinensis	RchiOBHm_Chr6g0298011
rosa_laevigata	RLG00000011543
rosa_multiflora	Rmu_sc0002800.1_g000022
rosa_roxburghii	Rroxscaffold_7G00170000 Rroxscaffold_7G00178830
rosa_rugosa	Rorug06G0278000
rosa_samantha	Rh6AG388300 Rh6BG396500 Rh6CG402500 Rh6DG388700
rosa_wichuraiana	Rw6G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	405
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	6 cut(s)	260, 273, 406, 493, 541, 588
AfaI	GTAC	1 cut(s)	6
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	476, 566, 674
Alw26I	GTCTC	2 cut(s)	104, 340
AlwI	GGATC	6 cut(s)	260, 273, 406, 493, 541, 588
ApeKI	GCWGC	3 cut(s)	122, 125, 286
AspLEI	GCGC	2 cut(s)	390, 407
AsuHPI	GGTGA	2 cut(s)	599, 648
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	134, 137, 273
BccI	CCATC	2 cut(s)	211, 331
BclI	TGATCA	2 cut(s)	211, 232
BcoDI	GTCTC	2 cut(s)	104, 340
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	391
BfrI	CTTAAG	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	123, 126, 287
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	3 cut(s)	124, 127, 288
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	2 cut(s)	155, 597
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	287
BsaBI	GATNNNNATC	2 cut(s)	490, 579
BsaJI	CCNNGG	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	40, 638
Bse8I	GATNNNNATC	2 cut(s)	490, 579
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	146
BseJI	GATNNNNATC	2 cut(s)	490, 579
BseMII	CTCAG	3 cut(s)	108, 304, 335
BseNI	ACTGG	2 cut(s)	40, 638
BseRI	GAGGAG	2 cut(s)	39, 100
BseXI	GCAGC	3 cut(s)	134, 137, 273
BseYI	CCCAGC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	405
BsmAI	GTCTC	2 cut(s)	104, 340
BsmI	GAATGC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	7 cut(s)	211, 232, 265, 398, 485, 533, 580
Bsp1720I	GCTNAGC	1 cut(s)	290
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	393
BspCNI	CTCAG	3 cut(s)	109, 303, 336
BspFNI	CGCG	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	6 cut(s)	260, 273, 406, 493, 541, 588
BspTI	CTTAAG	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	40, 638
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	7 cut(s)	211, 232, 265, 398, 485, 533, 580
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	9, 164, 469
Bst6I	CTCTTC	1 cut(s)	585
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	409, 603
BstDEI	CTNAG	3 cut(s)	117, 290, 344
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	2 cut(s)	390, 407
BstKTI	GATC	7 cut(s)	214, 235, 268, 401, 488, 536, 583
BstMAI	GTCTC	2 cut(s)	104, 340
BstMBI	GATC	7 cut(s)	211, 232, 265, 398, 485, 533, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 557, 607
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	3 cut(s)	134, 137, 273
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	409, 603
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	2 cut(s)	390, 407
Csp6I	GTAC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	23, 58
CviAII	CATG	4 cut(s)	245, 261, 424, 584
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	3 cut(s)	117, 290, 344
DpnI	GATC	7 cut(s)	213, 234, 267, 400, 487, 535, 582
DpnII	GATC	7 cut(s)	211, 232, 265, 398, 485, 533, 580
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	4 cut(s)	248, 264, 427, 587
FaiI	YATR	9 cut(s)	136, 138, 152, 246, 262, 425, 459, 505, 585
FatI	CATG	4 cut(s)	244, 260, 423, 583
FauI	CCCGC	1 cut(s)	400
FauNDI	CATATG	1 cut(s)	136
FbaI	TGATCA	2 cut(s)	211, 232
Fnu4HI	GCNGC	3 cut(s)	123, 126, 287
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	123, 126, 287
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	2 cut(s)	389, 406
GluI	GCNGC	3 cut(s)	123, 126, 287
GsaI	CCCAGC	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	391
HhaI	GCGC	2 cut(s)	390, 407
Hin1II	CATG	4 cut(s)	248, 264, 427, 587
Hin6I	GCGC	2 cut(s)	388, 405
HinP1I	GCGC	2 cut(s)	388, 405
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	3 cut(s)	27, 64, 348
HphI	GGTGA	2 cut(s)	599, 648
Hpy188I	TCNGA	5 cut(s)	23, 61, 168, 208, 345
Hpy188III	TCNNGA	4 cut(s)	215, 304, 424, 674
HpyAV	CCTTC	5 cut(s)	339, 439, 476, 663, 671
HpyCH4III	ACNGT	3 cut(s)	9, 164, 469
HpyCH4V	TGCA	4 cut(s)	281, 315, 560, 610
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 557, 607
HpyF3I	CTNAG	3 cut(s)	117, 290, 344
Hsp92II	CATG	4 cut(s)	248, 264, 427, 587
HspAI	GCGC	2 cut(s)	388, 405
Ksp22I	TGATCA	2 cut(s)	211, 232
Kzo9I	GATC	7 cut(s)	211, 232, 265, 398, 485, 533, 580
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	7 cut(s)	16, 53, 381, 422, 516, 537, 619
Lsp1109I	GCAGC	3 cut(s)	134, 137, 273
LweI	GCATC	2 cut(s)	155, 597
MaeI	CTAG	1 cut(s)	98
MalI	GATC	7 cut(s)	213, 234, 267, 400, 487, 535, 582
MboI	GATC	7 cut(s)	211, 232, 265, 398, 485, 533, 580
MboII	GAAGA	4 cut(s)	230, 454, 578, 602
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	50
MlyI	GAGTC	2 cut(s)	36, 342
MseI	TTAA	3 cut(s)	81, 509, 685
MslI	CAYNNNNRTG	2 cut(s)	155, 374
MspA1I	CMGCKG	3 cut(s)	116, 395, 530
MspCI	CTTAAG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 557, 607
NcoI	CCATGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	7 cut(s)	211, 232, 265, 398, 485, 533, 580
NlaIII	CATG	4 cut(s)	248, 264, 427, 587
NlaIV	GGNNCC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	423
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	124, 127, 288
PleI	GAGTC	2 cut(s)	35, 342
PpsI	GAGTC	2 cut(s)	35, 342
PspFI	CCCAGC	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	2 cut(s)	116, 530
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	2 cut(s)	155, 374
SaqAI	TTAA	3 cut(s)	81, 509, 685
SatI	GCNGC	3 cut(s)	123, 126, 287
Sau3AI	GATC	7 cut(s)	211, 232, 265, 398, 485, 533, 580
SchI	GAGTC	2 cut(s)	36, 342
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	2 cut(s)	155, 597
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	2 cut(s)	155, 374
SmlI	CTYRAG	2 cut(s)	80, 302
SmoI	CTYRAG	2 cut(s)	80, 302
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	3 cut(s)	9, 164, 469
TaqI	TCGA	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	3 cut(s)	81, 509, 685
Tru9I	TTAA	3 cut(s)	81, 509, 685
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	3 cut(s)	122, 125, 286
TspDTI	ATGAA	2 cut(s)	173, 495
TspRI	CASTG	1 cut(s)	47
Vha464I	CTTAAG	1 cut(s)	80
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.