Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008504

Physical Location & Seq

Genomic Coordinates Reverse (-)

3953140 .. 3956185

Gene Structure 3046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGCCTGAACGTTTAAAATTTGGAGGTCCAAGAGAGTTGTGCGGTGCTGCGGATCTTATATCTCAATTCAAACTAGTGCAACACCATGAATTCTTTTGCAAGAAATCTCTTCCTGTTTCTTTATCAGATTCCCATTATCTTCATAATGTGGTTGGGGACACAGAGATCAGAAAAGGAGAAGGAATGCAATTAGATCAGCTTATTGAGAGCATATCACAGAGCCGGGAGACTAATATTCGCATCCAGCCTTTTGATATAGATGAGCTTCAGGAGTCTTTCCAACTAAATGATATGACTCCTGTTGAATTACCCCCAGCAGAGAAGGGAGCTCCTACAATTCCGTCTAAGTCAAAAAGTGAGTCGAAAGATAGGGACAGGAAACATAAGAAACACAAGGACAGGGATAAAGACAAAGATAGAGAGCATAAGAAGCACAAGCACAAACATAAAGATAGAAGCAAAGATAAAGATAAAGACAAGGACCGAGACAGAAAGAAGGACAAAAATGGCCACCATGATTCGGGTGATCATTCTAAGAAACATCATGATAAGAAAAGGAAACACGATGGAGATGAAGATCTTAATGACGTTCAGAGGCACAAAAAAAACAAGCATAAAAGCTCAAAGCTTGATGAGGTGGGTGCAATAAGGGTTGCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.7

Weight (kDa)

9.25

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12230 AT5G19480 AT5G19480 AT5G19480 AT5G19480
fragaria_vesca	FvH4_2g17320
malus_domestica	MD05G1152100.v1.1 MD10G1146700.v1.1
prunus_persica	Prupe.8G184800_v2.0.a1
pyrus_communis	pycom05g14670
rosa_chinensis	RchiOBHm_Chr6g0281841
rosa_laevigata	RLG00000012925
rosa_multiflora	Rmu_sc0001992.1_g000014 Rmu_ssc0000126.1_g000034
rosa_roxburghii	Rroxscaffold_7G00186740
rosa_rugosa	Rorug06G0143900 Rorug06G0144000 Rorug06G0144100
rosa_samantha	Rh6AG257100 Rh6BG260200 Rh6CG259200 Rh6DG251300
rosa_wichuraiana	Rw6G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	45, 53
AclI	AACGTT	1 cut(s)	13
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	2 cut(s)	20, 92
AcuI	CTGAAG	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	73, 308
AhlI	ACTAGT	1 cut(s)	76
AluBI	AGCT	5 cut(s)	202, 268, 332, 624, 631
AluI	AGCT	5 cut(s)	202, 268, 332, 624, 631
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	224, 483
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	20, 92
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspS9I	GGNCC	2 cut(s)	29, 484
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	29, 484
BalI	TGGCCA	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	563
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	224, 483
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	29, 484
BmgT120I	GGNCC	2 cut(s)	29, 484
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse8I	GATNNNNATC	1 cut(s)	579
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	2 cut(s)	173, 389
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	224, 483
BsmFI	GGGAC	2 cut(s)	173, 389
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	5 cut(s)	55, 168, 196, 529, 580
BspACI	CCGC	2 cut(s)	45, 53
BspANI	GGCC	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	63
BssMI	GATC	5 cut(s)	55, 168, 196, 529, 580
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	2 cut(s)	348, 537
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	5 cut(s)	58, 171, 199, 532, 583
BstMAI	GTCTC	2 cut(s)	224, 483
BstMBI	GATC	5 cut(s)	55, 168, 196, 529, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	55, 580
BstYI	RGATCY	2 cut(s)	55, 580
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	661
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	29, 484
CviAII	CATG	3 cut(s)	89, 518, 548
DdeI	CTNAG	2 cut(s)	348, 537
DpnI	GATC	5 cut(s)	57, 170, 198, 531, 582
DpnII	GATC	5 cut(s)	55, 168, 196, 529, 580
DraI	TTTAAA	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	29, 484
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	3 cut(s)	92, 521, 551
FaqI	GGGAC	2 cut(s)	173, 389
FatI	CATG	3 cut(s)	88, 517, 547
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	3 cut(s)	92, 521, 551
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	5 cut(s)	131, 275, 298, 362, 521
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	3 cut(s)	130, 173, 597
Hpy188III	TCNNGA	2 cut(s)	272, 548
HpyAV	CCTTC	3 cut(s)	176, 319, 493
HpyCH4IV	ACGT	2 cut(s)	13, 591
HpyCH4V	TGCA	4 cut(s)	82, 102, 190, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	2 cut(s)	348, 537
HpySE526I	ACGT	2 cut(s)	13, 591
Hsp92II	CATG	3 cut(s)	92, 521, 551
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	55, 168, 196, 529, 580
LmnI	GCTCC	3 cut(s)	4, 329, 337
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	2 cut(s)	13, 591
MalI	GATC	5 cut(s)	57, 170, 198, 531, 582
MboI	GATC	5 cut(s)	55, 168, 196, 529, 580
MboII	GAAGA	3 cut(s)	104, 134, 590
MflI	RGATCY	2 cut(s)	55, 580
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	6 cut(s)	20, 68, 92, 191, 308, 339
MluNI	TGGCCA	1 cut(s)	513
MlyI	GAGTC	3 cut(s)	284, 292, 371
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	3 cut(s)	20, 591, 631
Mox20I	TGGCCA	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	513
MseI	TTAA	2 cut(s)	17, 585
Msp20I	TGGCCA	1 cut(s)	513
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	433
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	5 cut(s)	55, 168, 196, 529, 580
NlaIII	CATG	3 cut(s)	92, 521, 551
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	547
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	131, 521
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	3 cut(s)	283, 292, 370
PpsI	GAGTC	3 cut(s)	283, 292, 370
Psp124BI	GAGCTC	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	29, 484
PsuI	RGATCY	2 cut(s)	55, 580
SacI	GAGCTC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	17, 585
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	5 cut(s)	55, 168, 196, 529, 580
Sau96I	GGNCC	2 cut(s)	29, 484
SchI	GAGTC	3 cut(s)	284, 292, 371
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	9 cut(s)	16, 31, 204, 270, 334, 594, 626, 633, 642
SfaNI	GCATC	1 cut(s)	252
SinI	GGWCC	2 cut(s)	29, 484
SpeI	ACTAGT	1 cut(s)	76
Sse9I	AATT	6 cut(s)	20, 68, 92, 191, 308, 339
SsiI	CCGC	2 cut(s)	45, 53
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	225
TaiI	ACGT	2 cut(s)	16, 594
TaqI	TCGA	1 cut(s)	365
TaqII	GACCGA	1 cut(s)	501
TasI	AATT	6 cut(s)	20, 68, 92, 191, 308, 339
TfiI	GAWTC	2 cut(s)	131, 521
Tru1I	TTAA	2 cut(s)	17, 585
Tru9I	TTAA	2 cut(s)	17, 585
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	105, 134, 591
TspGWI	ACGGA	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	29, 484
XapI	RAATTY	2 cut(s)	20, 92
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.