Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008504

Physical Location & Seq

Genomic Coordinates Reverse (-)

20455793 .. 20460990

Gene Structure 5198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0143900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAAACAATCAGAAAGCAAGCCACCAGGCTTCGCGAACAGGTCGCTCGCCAACAACAGGCTGTCCTCAAGCAGTTTGGGGCTGGAGGATATGGAGGTAATTTAGTTACTGATGAGGCAGAACTAGTGCAGCATCAGAAACTTGAGAAGCTTTACATATCAACCCGTGCTGGAAAGCATTATCAAAGGGATATTGTTCGTGGTGTGGAGGGATATATTGTCACTGGATCCAAACAGGTTGAAATAGGAACAAAGCTGTCTGAAGATAGCAGGAAATATGGAGCTGAAAATACATGTACTAGTGGTAGTACGTTATCAAGAGCTTCATTAAGCTATGGACGTGCTCGTGCTCAAATGGAGAAGGAACGGGGGAATCTGTTGAAAGCTCTTGGCACACAGGTGGCGGAGCCATTAAGAGCAATGGTAATGGGCGCTCCATTGGAAGATGCTCGGCATCTTGCTCAACGATATGACAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAAGTTTCCAAACGCCAAGCAAAAGTGAGGGAAACACCAGGAAATTCAGATAATGTTATGAAACTAGAAGCAGCAGAAGCAAAGTTGCAAGATCTGAAGTCGAATATGGGAATATTAGGGAAGGAAGCAGCTGCAGCAATGGCAGCAGTCGAGGCTCAACAACAGAGATTGACTCTCCAGAGACTCATTGCCATGGTCGAGGCAGAGCGTACTTATCATCAGAGGATCCTTCAGATACTTGATCAACTTGAAGGAGAGATGGTATCAGAACGACAACGTATTGAAGCGCCTCCTAGCCCCACTGTTGACAACAGCATGCCTCCACCCCCACCTTATGAAGAAGTTAATGGTATATATGCTTCTCAAACACATAATGGATTGTCAGACGGTATGGATTACTTCTTGGGGGAGGTTATGTTTACATATCAAGCTGTTTCTGATGTGGAGCTCAGTTTGTCAGTTGGTGACTATGTTGTTGTGCGAAAGGTAACCAACAATGGTTGGGCAGAAGGGGAATGCAAAGGCAAAGCAGGTTGGTTCCCATTTGGATACATTGAAAGACGGGAACGAGTTCTTGCAAGCAAGGTGGCTGAAGTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

41.04

Weight (kDa)

7.0

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	307 - 355	1.5e-09	Variant SH3 domain
SH3_2	PF07653	307 - 355	4.6e-08	Variant SH3 domain
SH3_1	PF00018	308 - 350	3.4e-08	SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12230 AT5G19480 AT5G19480 AT5G19480 AT5G19480
fragaria_vesca	FvH4_2g17320
malus_domestica	MD05G1152100.v1.1 MD10G1146700.v1.1
prunus_persica	Prupe.8G184800_v2.0.a1
pyrus_communis	pycom05g14670
rosa_chinensis	RchiOBHm_Chr6g0281841
rosa_laevigata	RLG00000012925
rosa_multiflora	Rmu_sc0001992.1_g000014 Rmu_ssc0000126.1_g000034
rosa_roxburghii	Rroxscaffold_7G00186740
rosa_rugosa	Rorug06G0143900 Rorug06G0144000 Rorug06G0144100
rosa_samantha	Rh6AG257100 Rh6BG260200 Rh6CG259200 Rh6DG251300
rosa_wichuraiana	Rw6G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1028
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	4 cut(s)	222, 235, 727, 740
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	4 cut(s)	282, 513, 623, 722
AfaI	GTAC	3 cut(s)	298, 310, 718
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	6 cut(s)	242, 382, 509, 758, 791, 1064
AhlI	ACTAGT	2 cut(s)	124, 299
AjiI	CACGTC	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	26, 544
AleI	CACNNNNGTG	1 cut(s)	398
Alw21I	GWGCWC	3 cut(s)	346, 352, 957
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	4 cut(s)	222, 235, 727, 740
ApeKI	GCWGC	6 cut(s)	130, 578, 635, 638, 641, 650
ApoI	RAATTY	1 cut(s)	550
Asp700I	GAANNNNTTC	1 cut(s)	1077
AspLEI	GCGC	2 cut(s)	434, 796
AsuHPI	GGTGA	1 cut(s)	983
BamHI	GGATCC	2 cut(s)	227, 732
BanII	GRGCYC	1 cut(s)	957
BarI	GAAGNNNNNNTAC	2 cut(s)	850, 882
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	3 cut(s)	346, 352, 957
BbvI	GCAGC	6 cut(s)	142, 590, 625, 647, 653, 662
BccI	CCATC	1 cut(s)	760
BciT130I	CCWGG	2 cut(s)	28, 546
BciVI	GTATCC	1 cut(s)	1049
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	1 cut(s)	682
BcuI	ACTAGT	2 cut(s)	124, 299
BfaI	CTAG	4 cut(s)	125, 300, 572, 801
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	2 cut(s)	435, 797
BfuAI	ACCTGC	1 cut(s)	1028
BfuI	GTATCC	1 cut(s)	1049
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	6 cut(s)	131, 579, 636, 639, 642, 651
BlsI	GCNGC	6 cut(s)	132, 580, 637, 640, 643, 652
Bme1390I	CCNGG	2 cut(s)	28, 546
BmgBI	CACGTC	1 cut(s)	341
BmiI	GGNNCC	4 cut(s)	229, 408, 734, 1046
BmrFI	CCNGG	2 cut(s)	28, 546
BmsI	GCATC	3 cut(s)	142, 436, 463
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BpmI	CTGGAG	2 cut(s)	105, 668
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	2 cut(s)	53, 164
BsaJI	CCNNGG	1 cut(s)	699
BsaXI	ACNNNNNCTCC	4 cut(s)	753, 783, 908, 938
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	3 cut(s)	426, 651, 693
BseBI	CCWGG	2 cut(s)	28, 546
BseDI	CCNNGG	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	3 cut(s)	426, 651, 693
BseMII	CTCAG	2 cut(s)	512, 970
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	6 cut(s)	142, 590, 625, 647, 653, 662
BsgI	GTGCAG	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	346, 352, 957
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	682
BsmI	GAATGC	2 cut(s)	483, 1028
Bsp1286I	GDGCHC	3 cut(s)	346, 352, 957
Bsp143I	GATC	4 cut(s)	227, 598, 732, 748
Bsp19I	CCATGG	1 cut(s)	699
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	1 cut(s)	404
BspCNI	CTCAG	2 cut(s)	511, 969
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	229, 408, 734, 1046
BspMAI	CTGCAG	1 cut(s)	643
BspMI	ACCTGC	1 cut(s)	1028
BspPI	GGATC	4 cut(s)	222, 235, 727, 740
BsrDI	GCAATG	3 cut(s)	426, 651, 693
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	4 cut(s)	227, 598, 732, 748
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	28, 546
Bst4CI	ACNGT	2 cut(s)	811, 896
BstC8I	GCNNGC	4 cut(s)	21, 49, 824, 1087
BstDEI	CTNAG	2 cut(s)	498, 956
BstDSI	CCRYGG	1 cut(s)	699
BstEII	GGTNACC	1 cut(s)	994
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	435, 797
BstHHI	GCGC	2 cut(s)	434, 796
BstKTI	GATC	4 cut(s)	230, 601, 735, 751
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	4 cut(s)	227, 598, 732, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	584, 641, 647, 650, 659
BstNI	CCWGG	2 cut(s)	28, 546
BstNSI	RCATGY	2 cut(s)	297, 826
BstPI	GGTNACC	1 cut(s)	994
BstSCI	CCNGG	2 cut(s)	26, 544
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	6 cut(s)	142, 590, 625, 647, 653, 662
BstX2I	RGATCY	3 cut(s)	227, 598, 732
BstYI	RGATCY	3 cut(s)	227, 598, 732
BsuI	GTATCC	1 cut(s)	1049
BtgI	CCRYGG	1 cut(s)	699
BtrI	CACGTC	1 cut(s)	341
BtsIMutI	CAGTG	2 cut(s)	222, 807
BtuMI	TCGCGA	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	1028
Cac8I	GCNNGC	4 cut(s)	21, 49, 824, 1087
CfoI	GCGC	2 cut(s)	434, 796
Csp6I	GTAC	3 cut(s)	297, 309, 717
CspCI	CAANNNNNGTGG	2 cut(s)	1074, 1109
CviAII	CATG	3 cut(s)	294, 700, 823
CviQI	GTAC	3 cut(s)	297, 309, 717
DdeI	CTNAG	2 cut(s)	498, 956
DpnI	GATC	4 cut(s)	229, 600, 734, 750
DpnII	GATC	4 cut(s)	227, 598, 732, 748
EciI	GGCGGA	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	957
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	4 cut(s)	282, 513, 623, 722
Eco91I	GGTNACC	1 cut(s)	994
EcoICRI	GAGCTC	1 cut(s)	955
EcoO65I	GGTNACC	1 cut(s)	994
EcoRII	CCWGG	2 cut(s)	26, 544
EcoT14I	CCWWGG	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	3 cut(s)	297, 703, 826
FatI	CATG	3 cut(s)	293, 699, 822
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	6 cut(s)	131, 579, 636, 639, 642, 651
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	6 cut(s)	131, 579, 636, 639, 642, 651
FspBI	CTAG	4 cut(s)	125, 300, 572, 801
GlaI	GCGC	2 cut(s)	433, 795
GluI	GCNGC	6 cut(s)	131, 579, 636, 639, 642, 651
GsuI	CTGGAG	2 cut(s)	105, 668
HaeII	RGCGCY	2 cut(s)	435, 797
HhaI	GCGC	2 cut(s)	434, 796
Hin1II	CATG	3 cut(s)	297, 703, 826
Hin6I	GCGC	2 cut(s)	432, 794
HinP1I	GCGC	2 cut(s)	432, 794
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	3 cut(s)	373, 679, 690
HphI	GGTGA	1 cut(s)	983
Hpy166II	GTNNAC	2 cut(s)	814, 927
Hpy188III	TCNNGA	3 cut(s)	35, 318, 685
Hpy8I	GTNNAC	2 cut(s)	814, 927
HpyAV	CCTTC	5 cut(s)	355, 622, 746, 752, 1010
HpyCH4III	ACNGT	2 cut(s)	811, 896
HpyCH4IV	ACGT	3 cut(s)	311, 340, 784
HpyCH4V	TGCA	5 cut(s)	130, 595, 641, 1026, 1085
HpyF10VI	GCNNNNNNNGC	5 cut(s)	584, 641, 647, 650, 659
HpyF3I	CTNAG	2 cut(s)	498, 956
HpySE526I	ACGT	3 cut(s)	311, 340, 784
Hsp92II	CATG	3 cut(s)	297, 703, 826
HspAI	GCGC	2 cut(s)	432, 794
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	4 cut(s)	227, 598, 732, 748
LmnI	GCTCC	4 cut(s)	281, 406, 439, 952
Lsp1109I	GCAGC	6 cut(s)	142, 590, 625, 647, 653, 662
LweI	GCATC	3 cut(s)	142, 436, 463
MaeI	CTAG	4 cut(s)	125, 300, 572, 801
MaeII	ACGT	3 cut(s)	311, 340, 784
MaeIII	GTNAC	4 cut(s)	106, 220, 971, 994
MalI	GATC	4 cut(s)	229, 600, 734, 750
MboI	GATC	4 cut(s)	227, 598, 732, 748
MboII	GAAGA	3 cut(s)	275, 455, 857
MflI	RGATCY	3 cut(s)	227, 598, 732
MhlI	GDGCHC	3 cut(s)	346, 352, 957
MluCI	AATT	2 cut(s)	100, 550
MlyI	GAGTC	2 cut(s)	673, 684
MroXI	GAANNNNTTC	1 cut(s)	1077
MseI	TTAA	4 cut(s)	329, 413, 852, 1108
MslI	CAYNNNNRTG	2 cut(s)	398, 698
MspA1I	CMGCKG	1 cut(s)	638
MspR9I	CCNGG	2 cut(s)	28, 546
Mva1269I	GAATGC	2 cut(s)	483, 1028
MvaI	CCWGG	2 cut(s)	28, 546
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	5 cut(s)	584, 641, 647, 650, 659
NcoI	CCATGG	1 cut(s)	699
NdeII	GATC	4 cut(s)	227, 598, 732, 748
NlaIII	CATG	3 cut(s)	297, 703, 826
NlaIV	GGNNCC	4 cut(s)	229, 408, 734, 1046
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	2 cut(s)	220, 971
NruI	TCGCGA	1 cut(s)	36
NspI	RCATGY	2 cut(s)	297, 826
OliI	CACNNNNGTG	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	826
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	2 cut(s)	483, 1028
PdmI	GAANNNNTTC	1 cut(s)	1077
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	6 cut(s)	132, 580, 637, 640, 643, 652
PleI	GAGTC	2 cut(s)	673, 684
PpsI	GAGTC	2 cut(s)	673, 684
PscI	ACATGT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	957
Psp6I	CCWGG	2 cut(s)	26, 544
PspEI	GGTNACC	1 cut(s)	994
PspGI	CCWGG	2 cut(s)	26, 544
PspN4I	GGNNCC	4 cut(s)	229, 408, 734, 1046
PstI	CTGCAG	1 cut(s)	643
PsuI	RGATCY	3 cut(s)	227, 598, 732
PvuII	CAGCTG	1 cut(s)	638
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	3 cut(s)	298, 310, 718
RsaNI	GTAC	3 cut(s)	297, 309, 717
RseI	CAYNNNNRTG	2 cut(s)	398, 698
SacI	GAGCTC	1 cut(s)	957
SaqAI	TTAA	4 cut(s)	329, 413, 852, 1108
SatI	GCNGC	6 cut(s)	131, 579, 636, 639, 642, 651
Sau3AI	GATC	4 cut(s)	227, 598, 732, 748
SchI	GAGTC	2 cut(s)	673, 684
ScrFI	CCNGG	2 cut(s)	28, 546
SduI	GDGCHC	3 cut(s)	346, 352, 957
SfaNI	GCATC	3 cut(s)	142, 436, 463
SfcI	CTRYAG	1 cut(s)	639
SmiMI	CAYNNNNRTG	2 cut(s)	398, 698
SmlI	CTYRAG	2 cut(s)	68, 143
SmoI	CTYRAG	2 cut(s)	68, 143
SpeI	ACTAGT	2 cut(s)	124, 299
SphI	GCATGC	1 cut(s)	826
Sse9I	AATT	2 cut(s)	100, 550
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	4 cut(s)	125, 300, 572, 801
SstI	GAGCTC	1 cut(s)	957
StyD4I	CCNGG	2 cut(s)	26, 544
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	2 cut(s)	811, 896
TaiI	ACGT	3 cut(s)	314, 343, 787
TaqI	TCGA	3 cut(s)	608, 657, 705
TasI	AATT	2 cut(s)	100, 550
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	4 cut(s)	329, 413, 852, 1108
Tru9I	TTAA	4 cut(s)	329, 413, 852, 1108
TscAI	CASTG	2 cut(s)	229, 814
TseFI	GTSAC	2 cut(s)	220, 971
TseI	GCWGC	6 cut(s)	130, 578, 635, 638, 641, 650
Tsp45I	GTSAC	2 cut(s)	220, 971
TspDTI	ATGAA	3 cut(s)	315, 581, 858
TspRI	CASTG	2 cut(s)	229, 814
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	2 cut(s)	297, 826
XmnI	GAANNNNTTC	1 cut(s)	1077
XspI	CTAG	4 cut(s)	125, 300, 572, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.