Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008504

Physical Location & Seq

Genomic Coordinates Forward (+)

6571472 .. 6573623

Gene Structure 2152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAATCAGAGAGCGTTAAGTTTGGAGGTCCTAGAGAATTGGGTGGTGCACTAGATCTTATAACACAATACAAGTTGTTGCCACACCATGAATTCTTTTGCAAGAGATCACTTCCAGAGTCACTGTCAGATGCTCATTATCTTCATAATTTGGTTGGAGACACAGAGATTAGAAAAGGAGAAGGAATGCAATTAGATCAGCTTATTCCTAATGCATCACTTAGTAGCCGAGATACGAATGCTCGCATCCAACCTTTTGTTCTTGATGAACTTAAGGAGGCTTTTGAGCTTAATGATACAGCTCCTGTTGAATTGCCTCCAGCAGAGAAGGGAGCTCCTACCACTGTATCAAAATCAAAAAGTGAGTCAAAAGATAAGGATAGGAAACATAGAAAACATAAAGACAAGAAGGAGAAAGATAGGGAACATAAGAAGCACAAGCACAAGCATAAAGATAGGATCAAAGATAAGGATAAAGACAAGGATCGAGACAAAAAGAAGGAAAAAAGTGGACACCATGATAAGAAAAGGAAGAACAATGGGACTGAAGATGCTGATGACGTTCAGAGGCACAAAAAGAGTAAGCATAAGAGCTCAAAGCTTGATGAGATGGGAGCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.82

Weight (kDa)

9.36

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12230 AT5G19480 AT5G19480 AT5G19480 AT5G19480
fragaria_vesca	FvH4_2g17320
malus_domestica	MD05G1152100.v1.1 MD10G1146700.v1.1
prunus_persica	Prupe.8G184800_v2.0.a1
pyrus_communis	pycom05g14670
rosa_chinensis	RchiOBHm_Chr6g0281841
rosa_laevigata	RLG00000012925
rosa_multiflora	Rmu_sc0001992.1_g000014 Rmu_ssc0000126.1_g000034
rosa_roxburghii	Rroxscaffold_7G00186740
rosa_rugosa	Rorug06G0143900 Rorug06G0144000 Rorug06G0144100
rosa_samantha	Rh6AG257100 Rh6BG260200 Rh6CG259200 Rh6DG251300
rosa_wichuraiana	Rw6G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AclWI	GGATC	2 cut(s)	467, 492
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	567
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	6 cut(s)	202, 289, 302, 335, 594, 601
AluI	AGCT	6 cut(s)	202, 289, 302, 335, 594, 601
Alw21I	GWGCWC	3 cut(s)	52, 337, 596
Alw26I	GTCTC	2 cut(s)	153, 483
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	467, 492
AlwNI	CAGNNNCTG	1 cut(s)	305
ApaLI	GTGCAC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspS9I	GGNCC	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	52
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BanII	GRGCYC	2 cut(s)	337, 596
Bbv12I	GWGCWC	3 cut(s)	52, 337, 596
BccI	CCATC	1 cut(s)	604
BcoDI	GTCTC	2 cut(s)	153, 483
BfaI	CTAG	2 cut(s)	33, 53
BfrI	CTTAAG	1 cut(s)	272
BglII	AGATCT	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmsI	GCATC	4 cut(s)	121, 224, 255, 541
BpmI	CTGGAG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	52
BsiHKAI	GWGCWC	3 cut(s)	52, 337, 596
BslFI	GGGAC	1 cut(s)	556
BsmAI	GTCTC	2 cut(s)	153, 483
BsmFI	GGGAC	1 cut(s)	556
BsmI	GAATGC	2 cut(s)	192, 244
Bsp1286I	GDGCHC	3 cut(s)	52, 337, 596
Bsp143I	GATC	5 cut(s)	55, 107, 196, 459, 484
BspPI	GGATC	2 cut(s)	467, 492
BspTI	CTTAAG	1 cut(s)	272
BssMI	GATC	5 cut(s)	55, 107, 196, 459, 484
Bst4CI	ACNGT	2 cut(s)	126, 346
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	5 cut(s)	58, 110, 199, 462, 487
BstMAI	GTCTC	2 cut(s)	153, 483
BstMBI	GATC	5 cut(s)	55, 107, 196, 459, 484
BstSLI	GKGCMC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	122, 342
Cac8I	GCNNGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	29
CviAII	CATG	2 cut(s)	89, 518
CviJI	RGCY	8 cut(s)	202, 228, 281, 289, 302, 335, 594, 601
CviKI_1	RGCY	8 cut(s)	202, 228, 281, 289, 302, 335, 594, 601
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	5 cut(s)	57, 109, 198, 461, 486
DpnII	GATC	5 cut(s)	55, 107, 196, 459, 484
Ecl136II	GAGCTC	2 cut(s)	335, 594
Eco24I	GRGCYC	2 cut(s)	337, 596
Eco47I	GGWCC	1 cut(s)	29
Eco53kI	GAGCTC	2 cut(s)	335, 594
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	2 cut(s)	335, 594
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	337, 596
FaeI	CATG	2 cut(s)	92, 521
FaiI	YATR	9 cut(s)	62, 90, 147, 390, 399, 429, 450, 519, 588
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	2 cut(s)	88, 517
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	2 cut(s)	337, 596
FspBI	CTAG	2 cut(s)	33, 53
GsuI	CTGGAG	1 cut(s)	303
Hin1II	CATG	2 cut(s)	92, 521
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	3 cut(s)	5, 119, 365
Hpy166II	GTNNAC	2 cut(s)	50, 512
Hpy188I	TCNGA	3 cut(s)	10, 130, 567
Hpy188III	TCNNGA	3 cut(s)	116, 263, 488
Hpy8I	GTNNAC	2 cut(s)	50, 512
HpyAV	CCTTC	4 cut(s)	176, 322, 403, 493
HpyCH4III	ACNGT	2 cut(s)	126, 346
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	50, 102, 190, 215
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	2 cut(s)	92, 521
Kzo9I	GATC	5 cut(s)	55, 107, 196, 459, 484
LmnI	GCTCC	4 cut(s)	307, 332, 340, 614
LpnPI	CCDG	3 cut(s)	129, 318, 333
LweI	GCATC	4 cut(s)	121, 224, 255, 541
MaeI	CTAG	2 cut(s)	33, 53
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	5 cut(s)	57, 109, 198, 461, 486
MboI	GATC	5 cut(s)	55, 107, 196, 459, 484
MboII	GAAGA	3 cut(s)	134, 544, 560
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	3 cut(s)	52, 337, 596
MluCI	AATT	5 cut(s)	38, 92, 148, 191, 311
MlyI	GAGTC	2 cut(s)	128, 374
MmeI	TCCRAC	2 cut(s)	136, 274
MnlI	CCTC	4 cut(s)	20, 271, 327, 561
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	3 cut(s)	18, 273, 291
MspCI	CTTAAG	1 cut(s)	272
Mva1269I	GAATGC	2 cut(s)	192, 244
NdeII	GATC	5 cut(s)	55, 107, 196, 459, 484
NlaIII	CATG	2 cut(s)	92, 521
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	217
PctI	GAATGC	2 cut(s)	192, 244
PfeI	GAWTC	1 cut(s)	5
PleI	GAGTC	2 cut(s)	127, 373
PpsI	GAGTC	2 cut(s)	127, 373
PpuMI	RGGWCCY	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	62
Psp124BI	GAGCTC	2 cut(s)	337, 596
Psp5II	RGGWCCY	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	29
PspPPI	RGGWCCY	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	55
SacI	GAGCTC	2 cut(s)	337, 596
SaqAI	TTAA	3 cut(s)	18, 273, 291
Sau3AI	GATC	5 cut(s)	55, 107, 196, 459, 484
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	2 cut(s)	128, 374
SduI	GDGCHC	3 cut(s)	52, 337, 596
SetI	ASST	9 cut(s)	31, 204, 256, 291, 304, 337, 564, 596, 603
SfaNI	GCATC	4 cut(s)	121, 224, 255, 541
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	5 cut(s)	38, 92, 148, 191, 311
SspMI	CTAG	2 cut(s)	33, 53
SstI	GAGCTC	2 cut(s)	337, 596
TaaI	ACNGT	2 cut(s)	126, 346
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	487
TasI	AATT	5 cut(s)	38, 92, 148, 191, 311
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	18, 273, 291
Tru9I	TTAA	3 cut(s)	18, 273, 291
TscAI	CASTG	2 cut(s)	129, 349
TseFI	GTSAC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	3 cut(s)	105, 134, 282
TspRI	CASTG	2 cut(s)	129, 349
Vha464I	CTTAAG	1 cut(s)	272
VneI	GTGCAC	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	92
XspI	CTAG	2 cut(s)	33, 53
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.