Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008504

Physical Location & Seq

Genomic Coordinates Forward (+)

18213332 .. 18214961

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGATCCTGAAGGAACAAAGTTTGGACGAGGACCAAAAGAGTTGACTGGTGCTGTAGATCTCATAAGTCACTACAAGTTACTTCCCCACCATGAGTTTTTCTGCAAGCGATCACTTCCAGTATCAATATCAGACACACACTATCTTCACAATGTGGTGGGAGACACGGAAATCAGAAAAGGAGATGGGATGCAGTTGGATCAACTTATCCAGAGTACATCATATCCCCGGGATACGAAACCACGCATACAGCCTTTTGACCTAGATACTCTCAGAGAGGCTTTCCATCTTAGAGAAACGGCTCCTATTGATCTGCCACTTGCAGATAAGGGGACTCCGACTATTGCAGGGAAATCAAAGAGTGAGTCTAAAGACAAGGAGAAGAAACACAAAAAGCACAAGGACAAAGACAAGGACAAAGAGAAGGATAAAGAGCACAAGAAGCGTAAACACCGTCATAAAGATCGAAGTAAAGATAAAGACAAGGATAAGAAGAAGGACAAAGGTGGGCATCATGATCCGGCCGGTGATCACTCAAAGAAACATGAAAAGAAAAGGAAACATGATGGAGATGACGATCTTAATGATGTCCACAGACACAAAAAAAGTAAGCATAAGAGCTCAAAACTTGATGAAGTGGGTGCAATCAAGGTAGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.25

Weight (kDa)

9.56

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12230 AT5G19480 AT5G19480 AT5G19480 AT5G19480
fragaria_vesca	FvH4_2g17320
malus_domestica	MD05G1152100.v1.1 MD10G1146700.v1.1
prunus_persica	Prupe.8G184800_v2.0.a1
pyrus_communis	pycom05g14670
rosa_chinensis	RchiOBHm_Chr6g0281841
rosa_laevigata	RLG00000012925
rosa_multiflora	Rmu_sc0001992.1_g000014 Rmu_ssc0000126.1_g000034
rosa_roxburghii	Rroxscaffold_7G00186740
rosa_rugosa	Rorug06G0143900 Rorug06G0144000 Rorug06G0144100
rosa_samantha	Rh6AG257100 Rh6BG260200 Rh6CG259200 Rh6DG251300
rosa_wichuraiana	Rw6G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	12, 207, 512
AcoI	YGGCCR	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	30
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	217
AluBI	AGCT	2 cut(s)	621, 656
AluI	AGCT	2 cut(s)	621, 656
Alw21I	GWGCWC	2 cut(s)	438, 623
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	3 cut(s)	12, 207, 512
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	522
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	229, 230
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	623
Bbv12I	GWGCWC	2 cut(s)	438, 623
BccI	CCATC	3 cut(s)	179, 294, 560
BceAI	ACGGC	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	2 cut(s)	229, 230
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	229, 230
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	6, 303
BmrFI	CCNGG	2 cut(s)	229, 230
BmsI	GCATC	2 cut(s)	180, 520
BpuMI	CCSGG	2 cut(s)	229, 230
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	227, 228
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	2 cut(s)	52, 119
Bse8I	GATNNNNATC	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	227, 228
BseGI	GGATG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	2 cut(s)	52, 119
BseX3I	CGGCCG	1 cut(s)	522
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	2 cut(s)	438, 623
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	229, 521, 525
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	524
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	438, 623
Bsp143I	GATC	9 cut(s)	4, 58, 110, 199, 310, 463, 517, 529, 577
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	6, 303
BspPI	GGATC	3 cut(s)	12, 207, 512
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	2 cut(s)	52, 119
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	2 cut(s)	227, 228
BssMI	GATC	9 cut(s)	4, 58, 110, 199, 310, 463, 517, 529, 577
Bst4CI	ACNGT	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	107, 658
BstDEI	CTNAG	2 cut(s)	272, 290
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	9 cut(s)	7, 61, 113, 202, 313, 466, 520, 532, 580
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	9 cut(s)	4, 58, 110, 199, 310, 463, 517, 529, 577
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	227, 228
BstSFI	CTRYAG	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	4, 58
BstYI	RGATCY	2 cut(s)	4, 58
BstZI	CGGCCG	1 cut(s)	522
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	107, 658
CciI	TCATGA	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	32
Cfr9I	CCCGGG	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	4 cut(s)	92, 515, 545, 563
CviJI	RGCY	7 cut(s)	253, 281, 302, 524, 621, 656, 660
CviKI_1	RGCY	7 cut(s)	253, 281, 302, 524, 621, 656, 660
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	272, 290
DpnI	GATC	9 cut(s)	6, 60, 112, 201, 312, 465, 519, 531, 579
DpnII	GATC	9 cut(s)	4, 58, 110, 199, 310, 463, 517, 529, 577
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	522
EagI	CGGCCG	1 cut(s)	522
Ecl136II	GAGCTC	1 cut(s)	621
EclXI	CGGCCG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	32
Eco52I	CGGCCG	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	621
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	623
FaeI	CATG	4 cut(s)	95, 518, 548, 566
FaiI	YATR	9 cut(s)	65, 93, 223, 248, 459, 516, 546, 564, 615
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	4 cut(s)	91, 514, 544, 562
FbaI	TGATCA	1 cut(s)	529
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	623
FspBI	CTAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	524
HapII	CCGG	3 cut(s)	229, 521, 525
Hin1II	CATG	4 cut(s)	95, 518, 548, 566
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	334, 365
HpaII	CCGG	3 cut(s)	229, 521, 525
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	3 cut(s)	45, 449, 592
Hpy188I	TCNGA	4 cut(s)	133, 176, 275, 339
Hpy188III	TCNNGA	3 cut(s)	8, 211, 515
Hpy8I	GTNNAC	3 cut(s)	45, 449, 592
HpyAV	CCTTC	3 cut(s)	5, 418, 490
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	5 cut(s)	105, 193, 323, 347, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	2 cut(s)	272, 290
Hsp92II	CATG	4 cut(s)	95, 518, 548, 566
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	9 cut(s)	4, 58, 110, 199, 310, 463, 517, 529, 577
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	9 cut(s)	21, 33, 132, 224, 242, 333, 534, 538, 642
LweI	GCATC	2 cut(s)	180, 520
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	68, 78
MalI	GATC	9 cut(s)	6, 60, 112, 201, 312, 465, 519, 531, 579
MboI	GATC	9 cut(s)	4, 58, 110, 199, 310, 463, 517, 529, 577
MboII	GAAGA	3 cut(s)	137, 394, 505
MflI	RGATCY	2 cut(s)	4, 58
MhlI	GDGCHC	2 cut(s)	438, 623
MlyI	GAGTC	2 cut(s)	328, 374
MmeI	TCCRAC	2 cut(s)	177, 362
MnlI	CCTC	2 cut(s)	23, 271
MseI	TTAA	1 cut(s)	582
MspI	CCGG	3 cut(s)	229, 521, 525
MspR9I	CCNGG	2 cut(s)	229, 230
MwoI	GCNNNNNNNGC	1 cut(s)	442
NciI	CCSGG	2 cut(s)	229, 230
NdeII	GATC	9 cut(s)	4, 58, 110, 199, 310, 463, 517, 529, 577
NlaIII	CATG	4 cut(s)	95, 518, 548, 566
NlaIV	GGNNCC	2 cut(s)	6, 303
NmuCI	GTSAC	1 cut(s)	68
PagI	TCATGA	1 cut(s)	514
PleI	GAGTC	2 cut(s)	328, 373
PpsI	GAGTC	2 cut(s)	328, 373
Psp124BI	GAGCTC	1 cut(s)	623
PspN4I	GGNNCC	2 cut(s)	6, 303
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	4, 58
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	623
SaqAI	TTAA	1 cut(s)	582
Sau3AI	GATC	9 cut(s)	4, 58, 110, 199, 310, 463, 517, 529, 577
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	328, 374
ScrFI	CCNGG	2 cut(s)	229, 230
SduI	GDGCHC	2 cut(s)	438, 623
SetI	ASST	5 cut(s)	264, 508, 623, 654, 658
SfaNI	GCATC	2 cut(s)	180, 520
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	32
SmaI	CCCGGG	1 cut(s)	230
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	227, 228
TaaI	ACNGT	1 cut(s)	455
TaqI	TCGA	1 cut(s)	466
TatI	WGTACW	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	561, 648
TspGWI	ACGGA	1 cut(s)	182
TspMI	CCCGGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	32
XmaI	CCCGGG	1 cut(s)	228
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.