Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008504

Physical Location & Seq

Genomic Coordinates Forward (+)

44736098 .. 44743618

Gene Structure 7521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG257100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATCCTGAAGGAGCAAAGTTTGGAAGAGGACCAAGAGAGCTGACTGGTGCCGTAGATCTCATAAGTCACTACAAATTGCAAGCACACCATGAGTTTTTCTGCAAGCGTTCGCTTCCTGTATCAATTTCAGACACACACTATACCCACAATGTGGTGGGAGACACAGAAATCAGAAAAGGAGAGGGAATGCAATTGGATCAACTTATTCAGAGTACATATTCCAGGGATACTAAACCTCGAATACAGCCTTTTGACCTAGATATTCTCAGAGAGGCCTTCCAACTTAAAGAGACTGCTCCTATTGATTTGCCATCTGCAGAGAAGGGGACTCCAACTATTGCAGGGAAATCAAAGAGCGGGTCTAAAGACAAGGAGAGGAAACACAAAAAGCACAGAGACAAAGACAGAGACAAAGATAAGGTGAAGGAGAAAGAACATAAGAAGCACAAACACCGGCATAAAGATCGAAGTAAAGATAAAGACAAGGAGAAGAAAAAGGAGAAACATGATTCGGCGGGTGATCCCTCAAAGAAACATGAAAAGAAAAGGAAACATGATGGAGATGAAGATCTTAATGATGTTCAGAGACACAAAAAAAGTAAGGTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

23.66

Weight (kDa)

9.62

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12230 AT5G19480 AT5G19480 AT5G19480 AT5G19480
fragaria_vesca	FvH4_2g17320
malus_domestica	MD05G1152100.v1.1 MD10G1146700.v1.1
prunus_persica	Prupe.8G184800_v2.0.a1
pyrus_communis	pycom05g14670
rosa_chinensis	RchiOBHm_Chr6g0281841
rosa_laevigata	RLG00000012925
rosa_multiflora	Rmu_sc0001992.1_g000014 Rmu_ssc0000126.1_g000034
rosa_roxburghii	Rroxscaffold_7G00186740
rosa_rugosa	Rorug06G0143900 Rorug06G0144000 Rorug06G0144100
rosa_samantha	Rh6AG257100 Rh6BG260200 Rh6CG259200 Rh6DG251300
rosa_wichuraiana	Rw6G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccBSI	CCGCTC	1 cut(s)	360
AciI	CCGC	2 cut(s)	360, 518
AclWI	GGATC	3 cut(s)	12, 207, 518
AcuI	CTGAAG	1 cut(s)	30
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	5 cut(s)	156, 287, 393, 405, 583
AlwI	GGATC	3 cut(s)	12, 207, 518
AoxI	GGCC	1 cut(s)	276
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	436, 533
AvaII	GGWCC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	50
BccI	CCATC	2 cut(s)	322, 554
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	223
BcoDI	GTCTC	5 cut(s)	156, 287, 393, 405, 583
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	2 cut(s)	58, 571
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	6, 52
BmrFI	CCNGG	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	5 cut(s)	156, 287, 393, 405, 583
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	6 cut(s)	4, 58, 199, 466, 523, 571
BspACI	CCGC	2 cut(s)	360, 518
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	6, 52
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	3 cut(s)	12, 207, 518
BspT107I	GGYRCC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	6 cut(s)	4, 58, 199, 466, 523, 571
Bst2UI	CCWGG	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	84, 107
BstDEI	CTNAG	1 cut(s)	269
BstKTI	GATC	6 cut(s)	7, 61, 202, 469, 526, 574
BstMAI	GTCTC	5 cut(s)	156, 287, 393, 405, 583
BstMBI	GATC	6 cut(s)	4, 58, 199, 466, 523, 571
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	318
BstX2I	RGATCY	3 cut(s)	4, 58, 571
BstYI	RGATCY	3 cut(s)	4, 58, 571
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	84, 107
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	4 cut(s)	92, 509, 539, 557
CviJI	RGCY	3 cut(s)	43, 250, 278
CviKI_1	RGCY	3 cut(s)	43, 250, 278
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	6 cut(s)	6, 60, 201, 468, 525, 573
DpnII	GATC	6 cut(s)	4, 58, 199, 466, 523, 571
DraIII	CACNNNGTG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	4 cut(s)	95, 512, 542, 560
FaiI	YATR	9 cut(s)	65, 93, 144, 220, 441, 462, 510, 540, 558
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	91, 508, 538, 556
FauI	CCCGC	2 cut(s)	353, 511
FspBI	CTAG	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	4 cut(s)	95, 512, 542, 560
HinfI	GANTC	2 cut(s)	331, 512
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	2 cut(s)	436, 533
Hpy188I	TCNGA	5 cut(s)	133, 176, 213, 272, 588
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	4 cut(s)	5, 289, 319, 421
HpyCH4V	TGCA	5 cut(s)	82, 105, 193, 320, 344
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	95, 512, 542, 560
Kzo9I	GATC	6 cut(s)	4, 58, 199, 466, 523, 571
LmnI	GCTCC	2 cut(s)	14, 304
LpnPI	CCDG	7 cut(s)	21, 33, 132, 211, 238, 330, 470
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	6 cut(s)	6, 60, 201, 468, 525, 573
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	6 cut(s)	4, 58, 199, 466, 523, 571
MboII	GAAGA	3 cut(s)	39, 505, 581
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	3 cut(s)	4, 58, 571
MluCI	AATT	3 cut(s)	77, 126, 194
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	307, 359
MnlI	CCTC	6 cut(s)	23, 178, 249, 268, 372, 538
MseI	TTAA	2 cut(s)	288, 576
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	226
NdeII	GATC	6 cut(s)	4, 58, 199, 466, 523, 571
NlaIII	CATG	4 cut(s)	95, 512, 542, 560
NlaIV	GGNNCC	2 cut(s)	6, 52
NmuCI	GTSAC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	154
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	6, 52
PspPI	GGNCC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	3 cut(s)	4, 58, 571
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	288, 576
Sau3AI	GATC	6 cut(s)	4, 58, 199, 466, 523, 571
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	5 cut(s)	45, 241, 261, 426, 609
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	32
Sse9I	AATT	3 cut(s)	77, 126, 194
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	2 cut(s)	360, 518
SspMI	CTAG	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	224
TaqI	TCGA	2 cut(s)	241, 469
TasI	AATT	3 cut(s)	77, 126, 194
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	288, 576
Tru9I	TTAA	2 cut(s)	288, 576
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	555, 582
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	32
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.