Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008504

Physical Location & Seq

Genomic Coordinates Forward (+)

23307785 .. 23312059

Gene Structure 4275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1146700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGATCCTGAAGGAACGAAGTTTGGACGAGGACCAAAGGAGTTGACTGGTGCTGTAGATCTCATAAGTCACTACAAGTTACTTCCCCACCATGAGTTTTTCTGCAAGCGACCACTTCCAGTATCAATATCAGACACACACTATCTTCACAATGTGGTGGGAGACACAGAAATCAGAAAAGGAGAGGGGATGCAGTTGGATCAACTTATTCAGAGTACATCATATCCCCGGGATACAAAACCACGCATACAGCCTTTTGAACTAGATACTCTCAGAGAGGCTTTCCATCTTAGAGAAACGGCTCCTATTGATCTACCACTTGCAGATAAGGGGACTCCAACTATTGCAGGGAAATCAAAGAGCGAGTCTAAAGACAAGGAGAAGAAACACAAAAAGCACAAGGACAGAGACAAAGAGAAGGATAAAGAGCACAAGAAGCGTAAACACCGTCATAAAGATCGAAGCAAAGATAAAGACAGGGATAAGAAGAAGGATAAAAGTGGGCATCATGATCCGTCCGGTGATCACTCAAAGAAACATGAAAAGAAAAGGAAACACGATGGAGATGAAGACCTTAATGATGTCCACAGACACAAAAAAAGTAAGCATAAGAGTTCAAAACTTGATGAAGTGGGCGCAATCAAGGTAGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

25.16

Weight (kDa)

9.6

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12230 AT5G19480 AT5G19480 AT5G19480 AT5G19480
fragaria_vesca	FvH4_2g17320
malus_domestica	MD05G1152100.v1.1 MD10G1146700.v1.1
prunus_persica	Prupe.8G184800_v2.0.a1
pyrus_communis	pycom05g14670
rosa_chinensis	RchiOBHm_Chr6g0281841
rosa_laevigata	RLG00000012925
rosa_multiflora	Rmu_sc0001992.1_g000014 Rmu_ssc0000126.1_g000034
rosa_roxburghii	Rroxscaffold_7G00186740
rosa_rugosa	Rorug06G0143900 Rorug06G0144000 Rorug06G0144100
rosa_samantha	Rh6AG257100 Rh6BG260200 Rh6CG259200 Rh6DG251300
rosa_wichuraiana	Rw6G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	12, 207, 506
AcuI	CTGAAG	1 cut(s)	30
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	260, 618
AluBI	AGCT	1 cut(s)	650
AluI	AGCT	1 cut(s)	650
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	156, 402
AlwI	GGATC	3 cut(s)	12, 207, 506
Ama87I	CYCGRG	1 cut(s)	228
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	229, 230
AsuHPI	GGTGA	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	2 cut(s)	294, 554
BceAI	ACGGC	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	2 cut(s)	229, 230
BcoDI	GTCTC	2 cut(s)	156, 402
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	229, 230
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	6, 303
BmrFI	CCNGG	2 cut(s)	229, 230
BmsI	GCATC	2 cut(s)	180, 514
BpiI	GAAGAC	1 cut(s)	576
BpuMI	CCSGG	2 cut(s)	229, 230
BsaJI	CCNNGG	2 cut(s)	227, 228
BsaWI	WCCGGW	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	52, 119
BseDI	CCNNGG	2 cut(s)	227, 228
BseGI	GGATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	2 cut(s)	52, 119
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	229, 519
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	2 cut(s)	156, 402
BsmFI	GGGAC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	7 cut(s)	4, 58, 199, 310, 457, 511, 523
BspCNI	CTCAG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	6, 303
BspPI	GGATC	3 cut(s)	12, 207, 506
BsrI	ACTGG	2 cut(s)	52, 119
BssECI	CCNNGG	2 cut(s)	227, 228
BssMI	GATC	7 cut(s)	4, 58, 199, 310, 457, 511, 523
Bst4CI	ACNGT	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	107, 652
BstDEI	CTNAG	2 cut(s)	272, 290
BstF5I	GGATG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	7 cut(s)	7, 61, 202, 313, 460, 514, 526
BstMAI	GTCTC	2 cut(s)	156, 402
BstMBI	GATC	7 cut(s)	4, 58, 199, 310, 457, 511, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	227, 228
BstSFI	CTRYAG	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	2 cut(s)	4, 58
BstYI	RGATCY	2 cut(s)	4, 58
BsuI	GTATCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	107, 652
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	32
Cfr9I	CCCGGG	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	92, 509, 539
CviJI	RGCY	5 cut(s)	253, 281, 302, 650, 654
CviKI_1	RGCY	5 cut(s)	253, 281, 302, 650, 654
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	272, 290
DpnI	GATC	7 cut(s)	6, 60, 201, 312, 459, 513, 525
DpnII	GATC	7 cut(s)	4, 58, 199, 310, 457, 511, 523
DraIII	CACNNNGTG	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	228
FaeI	CATG	3 cut(s)	95, 512, 542
FaiI	YATR	8 cut(s)	65, 93, 223, 248, 453, 510, 540, 609
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	3 cut(s)	91, 508, 538
FbaI	TGATCA	1 cut(s)	523
FokI	GGATG	1 cut(s)	202
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	637
HapII	CCGG	2 cut(s)	229, 519
HhaI	GCGC	1 cut(s)	638
Hin1II	CATG	3 cut(s)	95, 512, 542
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	334, 365
HpaII	CCGG	2 cut(s)	229, 519
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	3 cut(s)	45, 443, 586
Hpy188I	TCNGA	4 cut(s)	133, 176, 213, 275
Hpy188III	TCNNGA	2 cut(s)	8, 509
Hpy8I	GTNNAC	3 cut(s)	45, 443, 586
HpyAV	CCTTC	3 cut(s)	5, 412, 484
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	4 cut(s)	105, 193, 323, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	2 cut(s)	272, 290
Hsp92II	CATG	3 cut(s)	95, 512, 542
HspAI	GCGC	1 cut(s)	636
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	7 cut(s)	4, 58, 199, 310, 457, 511, 523
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	8 cut(s)	21, 33, 132, 242, 333, 463, 532, 636
LweI	GCATC	2 cut(s)	180, 514
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	68, 78
MalI	GATC	7 cut(s)	6, 60, 201, 312, 459, 513, 525
MboI	GATC	7 cut(s)	4, 58, 199, 310, 457, 511, 523
MboII	GAAGA	4 cut(s)	137, 394, 499, 581
MflI	RGATCY	2 cut(s)	4, 58
MhlI	GDGCHC	1 cut(s)	432
MlyI	GAGTC	2 cut(s)	328, 374
MmeI	TCCRAC	2 cut(s)	177, 362
MnlI	CCTC	3 cut(s)	23, 178, 271
MseI	TTAA	1 cut(s)	576
MspI	CCGG	2 cut(s)	229, 519
MspR9I	CCNGG	2 cut(s)	229, 230
MwoI	GCNNNNNNNGC	1 cut(s)	436
NciI	CCSGG	2 cut(s)	229, 230
NdeII	GATC	7 cut(s)	4, 58, 199, 310, 457, 511, 523
NlaIII	CATG	3 cut(s)	95, 512, 542
NlaIV	GGNNCC	2 cut(s)	6, 303
NmuCI	GTSAC	1 cut(s)	68
PagI	TCATGA	1 cut(s)	508
PleI	GAGTC	2 cut(s)	328, 373
PpsI	GAGTC	2 cut(s)	328, 373
PspN4I	GGNNCC	2 cut(s)	6, 303
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	4, 58
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	576
Sau3AI	GATC	7 cut(s)	4, 58, 199, 310, 457, 511, 523
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	328, 374
ScrFI	CCNGG	2 cut(s)	229, 230
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	3 cut(s)	576, 648, 652
SfaNI	GCATC	2 cut(s)	180, 514
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	32
SmaI	CCCGGG	1 cut(s)	230
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	227, 228
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	1 cut(s)	460
TatI	WGTACW	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	555, 582, 642
TspGWI	ACGGA	1 cut(s)	504
TspMI	CCCGGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	32
XmaI	CCCGGG	1 cut(s)	228
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.