mediator of RNA polymerase II transcription subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4253 |
| AarI | CACCTGC | 3 cut(s) | 901, 4171, 5340 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1150 |
| Acc36I | ACCTGC | 4 cut(s) | 901, 3763, 4171, 5340 |
| Acc65I | GGTACC | 1 cut(s) | 64 |
| AccB1I | GGYRCC | 4 cut(s) | 64, 1712, 3088, 3288 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1441, 5495 |
| AccI | GTMKAC | 3 cut(s) | 929, 2778, 5197 |
| AccII | CGCG | 2 cut(s) | 576, 578 |
| AciI | CCGC | 6 cut(s) | 275, 560, 578, 2456, 2936, 3282 |
| AcoI | YGGCCR | 5 cut(s) | 483, 1624, 1861, 4188, 4622 |
| AcsI | RAATTY | 8 cut(s) | 2056, 2188, 2537, 3182, 3901, 4323, 4967, 5326 |
| AcuI | CTGAAG | 6 cut(s) | 359, 1653, 2733, 3066, 3664, 4889 |
| AcyI | GRCGYC | 2 cut(s) | 3289, 5309 |
| AdeI | CACNNNGTG | 2 cut(s) | 4988, 5218 |
| AflIII | ACRYGT | 2 cut(s) | 2246, 5124 |
| AgeI | ACCGGT | 1 cut(s) | 67 |
| AjiI | CACGTC | 1 cut(s) | 927 |
| AjnI | CCWGG | 7 cut(s) | 301, 1626, 1839, 3131, 3401, 3940, 5311 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 161, 193 |
| AleI | CACNNNNGTG | 2 cut(s) | 1834, 3795 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 338, 370, 2455, 2487 |
| Alw21I | GWGCWC | 4 cut(s) | 3746, 3781, 4780, 5214 |
| Alw26I | GTCTC | 7 cut(s) | 1432, 1539, 1838, 2266, 3111, 3119, 3259 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 995, 1441, 3704, 4186, 5159 |
| ApoI | RAATTY | 8 cut(s) | 2056, 2188, 2537, 3182, 3901, 4323, 4967, 5326 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3799, 3831 |
| AsiGI | ACCGGT | 1 cut(s) | 67 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 499, 719, 3936, 4458 |
| Asp718I | GGTACC | 1 cut(s) | 64 |
| AspLEI | GCGC | 4 cut(s) | 576, 578, 3291, 5716 |
| AspS9I | GGNCC | 5 cut(s) | 48, 828, 2717, 4537, 4796 |
| AsuC2I | CCSGG | 2 cut(s) | 4493, 4794 |
| AsuNHI | GCTAGC | 1 cut(s) | 4312 |
| AvaII | GGWCC | 3 cut(s) | 48, 2717, 4537 |
| AxyI | CCTNAGG | 1 cut(s) | 1179 |
| BaeGI | GKGCMC | 1 cut(s) | 4395 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 2098, 2131, 3539, 3572, 4491, 4524 |
| BalI | TGGCCA | 4 cut(s) | 485, 1626, 1863, 4624 |
| BamHI | GGATCC | 5 cut(s) | 1763, 3398, 3766, 5026, 5652 |
| BanI | GGYRCC | 4 cut(s) | 64, 1712, 3088, 3288 |
| BanII | GRGCYC | 1 cut(s) | 3746 |
| BbsI | GAAGAC | 4 cut(s) | 1694, 2424, 5004, 5396 |
| Bbv12I | GWGCWC | 4 cut(s) | 3746, 3781, 4780, 5214 |
| BceAI | ACGGC | 3 cut(s) | 1637, 1933, 2651 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 4212, 4246, 4738, 4772 |
| BciT130I | CCWGG | 7 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 5313 |
| BciVI | GTATCC | 1 cut(s) | 2362 |
| BclI | TGATCA | 2 cut(s) | 2419, 4642 |
| BcnI | CCSGG | 2 cut(s) | 4493, 4794 |
| BcoDI | GTCTC | 7 cut(s) | 1432, 1539, 1838, 2266, 3111, 3119, 3259 |
| BfmI | CTRYAG | 9 cut(s) | 390, 408, 930, 1521, 2139, 3231, 4026, 4830, 4836 |
| BfoI | RGCGCY | 2 cut(s) | 3292, 5717 |
| BfuAI | ACCTGC | 4 cut(s) | 901, 3763, 4171, 5340 |
| BfuI | GTATCC | 1 cut(s) | 2362 |
| BlpI | GCTNAGC | 2 cut(s) | 1395, 4317 |
| BmcAI | AGTACT | 1 cut(s) | 5660 |
| Bme1390I | CCNGG | 9 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 4493, 4794, 5313 |
| Bme18I | GGWCC | 3 cut(s) | 48, 2717, 4537 |
| BmgBI | CACGTC | 1 cut(s) | 927 |
| BmgT120I | GGNCC | 5 cut(s) | 48, 828, 2717, 4537, 4796 |
| BmrFI | CCNGG | 9 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 4493, 4794, 5313 |
| BmrI | ACTGGG | 1 cut(s) | 4171 |
| BmsI | GCATC | 8 cut(s) | 481, 1999, 2163, 2526, 3019, 4210, 4374, 4584 |
| BmtI | GCTAGC | 1 cut(s) | 4316 |
| BmuI | ACTGGG | 1 cut(s) | 4171 |
| BpiI | GAAGAC | 4 cut(s) | 1694, 2424, 5004, 5396 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2639, 2671 |
| BpmI | CTGGAG | 5 cut(s) | 3087, 3588, 4550, 4619, 4878 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1395, 4317 |
| BpuMI | CCSGG | 2 cut(s) | 4493, 4794 |
| Bsa29I | ATCGAT | 2 cut(s) | 2500, 4368 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1863, 5238 |
| BsaHI | GRCGYC | 2 cut(s) | 3289, 5309 |
| BsaI | GGTCTC | 1 cut(s) | 3259 |
| BsaWI | WCCGGW | 2 cut(s) | 28, 67 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 746, 776, 3239, 3269, 4554, 4584 |
| Bse118I | RCCGGY | 1 cut(s) | 67 |
| Bse1I | ACTGG | 8 cut(s) | 226, 1251, 1446, 2118, 2994, 4166, 5373, 5656 |
| Bse21I | CCTNAGG | 1 cut(s) | 1179 |
| Bse3DI | GCAATG | 6 cut(s) | 2539, 2787, 3838, 4230, 5389, 5478 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1863, 5238 |
| BseBI | CCWGG | 7 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 5313 |
| BseCI | ATCGAT | 2 cut(s) | 2500, 4368 |
| BseJI | GATNNNNATC | 2 cut(s) | 1863, 5238 |
| BseMI | GCAATG | 6 cut(s) | 2539, 2787, 3838, 4230, 5389, 5478 |
| BseMII | CTCAG | 8 cut(s) | 2139, 2330, 2504, 2670, 2868, 3796, 4308, 4833 |
| BseNI | ACTGG | 8 cut(s) | 226, 1251, 1446, 2118, 2994, 4166, 5373, 5656 |
| BsePI | GCGCGC | 1 cut(s) | 574 |
| BseRI | GAGGAG | 7 cut(s) | 754, 1557, 1985, 3202, 3440, 4817, 5036 |
| BseSI | GKGCMC | 1 cut(s) | 4395 |
| BseYI | CCCAGC | 3 cut(s) | 800, 1077, 3827 |
| BsgI | GTGCAG | 4 cut(s) | 1864, 2607, 4684, 4768 |
| Bsh1236I | CGCG | 2 cut(s) | 576, 578 |
| BshNI | GGYRCC | 4 cut(s) | 64, 1712, 3088, 3288 |
| BshTI | ACCGGT | 1 cut(s) | 67 |
| BshVI | ATCGAT | 2 cut(s) | 2500, 4368 |
| BsiHKAI | GWGCWC | 4 cut(s) | 3746, 3781, 4780, 5214 |
| BsiSI | CCGG | 5 cut(s) | 29, 68, 4011, 4493, 4793 |
| BslFI | GGGAC | 7 cut(s) | 1171, 1726, 2828, 2992, 3956, 4523, 5458 |
| BsmAI | GTCTC | 7 cut(s) | 1432, 1539, 1838, 2266, 3111, 3119, 3259 |
| BsmFI | GGGAC | 7 cut(s) | 1171, 1726, 2828, 2992, 3956, 4523, 5458 |
| BsmI | GAATGC | 3 cut(s) | 619, 1174, 3012 |
| Bso31I | GGTCTC | 1 cut(s) | 3259 |
| Bsp1286I | GDGCHC | 5 cut(s) | 3746, 3781, 4395, 4780, 5214 |
| Bsp1407I | TGTACA | 1 cut(s) | 172 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1395, 4317 |
| Bsp19I | CCATGG | 1 cut(s) | 4357 |
| BspACI | CCGC | 6 cut(s) | 275, 560, 578, 2456, 2936, 3282 |
| BspCNI | CTCAG | 8 cut(s) | 2140, 2329, 2505, 2669, 2867, 3795, 4309, 4834 |
| BspDI | ATCGAT | 2 cut(s) | 2500, 4368 |
| BspFNI | CGCG | 2 cut(s) | 576, 578 |
| BspMAI | CTGCAG | 5 cut(s) | 394, 412, 1525, 3235, 4834 |
| BspMI | ACCTGC | 4 cut(s) | 901, 3763, 4171, 5340 |
| BspOI | GCTAGC | 1 cut(s) | 4316 |
| BspT107I | GGYRCC | 4 cut(s) | 64, 1712, 3088, 3288 |
| BspTNI | GGTCTC | 1 cut(s) | 3259 |
| BsrDI | GCAATG | 6 cut(s) | 2539, 2787, 3838, 4230, 5389, 5478 |
| BsrFI | RCCGGY | 1 cut(s) | 67 |
| BsrGI | TGTACA | 1 cut(s) | 172 |
| BsrI | ACTGG | 8 cut(s) | 226, 1251, 1446, 2118, 2994, 4166, 5373, 5656 |
| BssAI | RCCGGY | 1 cut(s) | 67 |
| BssHII | GCGCGC | 1 cut(s) | 574 |
| BssNI | GRCGYC | 2 cut(s) | 3289, 5309 |
| BssT1I | CCWWGG | 6 cut(s) | 59, 2767, 3642, 4357, 5130, 5564 |
| Bst2UI | CCWGG | 7 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 5313 |
| Bst6I | CTCTTC | 5 cut(s) | 93, 1978, 2742, 4802, 5772 |
| BstACI | GRCGYC | 2 cut(s) | 3289, 5309 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 449, 1169, 2009, 2173, 2308, 5534 |
| BstAUI | TGTACA | 1 cut(s) | 172 |
| BstDSI | CCRYGG | 3 cut(s) | 124, 2633, 4357 |
| BstFNI | CGCG | 2 cut(s) | 576, 578 |
| BstH2I | RGCGCY | 2 cut(s) | 3292, 5717 |
| BstHHI | GCGC | 4 cut(s) | 576, 578, 3291, 5716 |
| BstMAI | GTCTC | 7 cut(s) | 1432, 1539, 1838, 2266, 3111, 3119, 3259 |
| BstNI | CCWGG | 7 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 5313 |
| BstSCI | CCNGG | 9 cut(s) | 301, 1626, 1839, 3131, 3401, 3940, 4491, 4792, 5311 |
| BstSFI | CTRYAG | 9 cut(s) | 390, 408, 930, 1521, 2139, 3231, 4026, 4830, 4836 |
| BstSLI | GKGCMC | 1 cut(s) | 4395 |
| BstUI | CGCG | 2 cut(s) | 576, 578 |
| BstV2I | GAAGAC | 4 cut(s) | 1694, 2424, 5004, 5396 |
| BstX2I | RGATCY | 7 cut(s) | 1763, 3274, 3398, 3766, 5026, 5107, 5652 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 838, 1283, 2362, 5571 |
| BstYI | RGATCY | 7 cut(s) | 1763, 3274, 3398, 3766, 5026, 5107, 5652 |
| Bsu15I | ATCGAT | 2 cut(s) | 2500, 4368 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1179 |
| BsuI | GTATCC | 1 cut(s) | 2362 |
| BsuTUI | ATCGAT | 2 cut(s) | 2500, 4368 |
| BtgI | CCRYGG | 3 cut(s) | 124, 2633, 4357 |
| BtrI | CACGTC | 1 cut(s) | 927 |
| BtsI | GCAGTG | 2 cut(s) | 334, 1530 |
| BveI | ACCTGC | 4 cut(s) | 901, 3763, 4171, 5340 |
| CaiI | CAGNNNCTG | 5 cut(s) | 995, 1441, 3704, 4186, 5159 |
| CfoI | GCGC | 4 cut(s) | 576, 578, 3291, 5716 |
| Cfr10I | RCCGGY | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 5 cut(s) | 48, 828, 2717, 4537, 4796 |
| ClaI | ATCGAT | 2 cut(s) | 2500, 4368 |
| CseI | GACGC | 1 cut(s) | 5317 |
| CspAI | ACCGGT | 1 cut(s) | 67 |
| DinI | GGCGCC | 1 cut(s) | 3290 |
| DraI | TTTAAA | 1 cut(s) | 1954 |
| DraIII | CACNNNGTG | 2 cut(s) | 4988, 5218 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1150 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1150 |
| EaeI | YGGCCR | 5 cut(s) | 483, 1624, 1861, 4188, 4622 |
| Eam1104I | CTCTTC | 5 cut(s) | 93, 1978, 2742, 4802, 5772 |
| EarI | CTCTTC | 5 cut(s) | 93, 1978, 2742, 4802, 5772 |
| EciI | GGCGGA | 1 cut(s) | 2925 |
| Ecl136II | GAGCTC | 1 cut(s) | 3744 |
| Eco130I | CCWWGG | 6 cut(s) | 59, 2767, 3642, 4357, 5130, 5564 |
| Eco24I | GRGCYC | 1 cut(s) | 3746 |
| Eco31I | GGTCTC | 1 cut(s) | 3259 |
| Eco32I | GATATC | 1 cut(s) | 3343 |
| Eco47I | GGWCC | 3 cut(s) | 48, 2717, 4537 |
| Eco53kI | GAGCTC | 1 cut(s) | 3744 |
| Eco57I | CTGAAG | 6 cut(s) | 359, 1653, 2733, 3066, 3664, 4889 |
| Eco81I | CCTNAGG | 1 cut(s) | 1179 |
| EcoICRI | GAGCTC | 1 cut(s) | 3744 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2717, 4537 |
| EcoRI | GAATTC | 4 cut(s) | 2056, 2188, 4323, 4967 |
| EcoRII | CCWGG | 7 cut(s) | 301, 1626, 1839, 3131, 3401, 3940, 5311 |
| EcoRV | GATATC | 1 cut(s) | 3343 |
| EcoT14I | CCWWGG | 6 cut(s) | 59, 2767, 3642, 4357, 5130, 5564 |
| EcoT22I | ATGCAT | 1 cut(s) | 3014 |
| EcoT38I | GRGCYC | 1 cut(s) | 3746 |
| EgeI | GGCGCC | 1 cut(s) | 3290 |
| EheI | GGCGCC | 1 cut(s) | 3290 |
| ErhI | CCWWGG | 6 cut(s) | 59, 2767, 3642, 4357, 5130, 5564 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2634, 2666, 3601, 3633, 5381, 5413 |
| FaqI | GGGAC | 7 cut(s) | 1171, 1726, 2828, 2992, 3956, 4523, 5458 |
| FauNDI | CATATG | 1 cut(s) | 3772 |
| FbaI | TGATCA | 2 cut(s) | 2419, 4642 |
| FblI | GTMKAC | 3 cut(s) | 929, 2778, 5197 |
| FriOI | GRGCYC | 1 cut(s) | 3746 |
| GlaI | GCGC | 4 cut(s) | 575, 577, 3290, 5715 |
| GsaI | CCCAGC | 3 cut(s) | 804, 1081, 3831 |
| GsuI | CTGGAG | 5 cut(s) | 3087, 3588, 4550, 4619, 4878 |
| HaeII | RGCGCY | 2 cut(s) | 3292, 5717 |
| HapII | CCGG | 5 cut(s) | 29, 68, 4011, 4493, 4793 |
| HgaI | GACGC | 1 cut(s) | 5317 |
| HhaI | GCGC | 4 cut(s) | 576, 578, 3291, 5716 |
| Hin1I | GRCGYC | 2 cut(s) | 3289, 5309 |
| Hin6I | GCGC | 4 cut(s) | 574, 576, 3289, 5714 |
| HinP1I | GCGC | 4 cut(s) | 574, 576, 3289, 5714 |
| HpaII | CCGG | 5 cut(s) | 29, 68, 4011, 4493, 4793 |
| Hpy99I | CGWCG | 1 cut(s) | 2292 |
| HpyCH4IV | ACGT | 5 cut(s) | 399, 926, 1209, 2626, 2821 |
| HpySE526I | ACGT | 5 cut(s) | 399, 926, 1209, 2626, 2821 |
| Hsp92I | GRCGYC | 2 cut(s) | 3289, 5309 |
| HspAI | GCGC | 4 cut(s) | 574, 576, 3289, 5714 |
| KasI | GGCGCC | 1 cut(s) | 3288 |
| KflI | GGGWCCC | 1 cut(s) | 4537 |
| KpnI | GGTACC | 1 cut(s) | 68 |
| Ksp22I | TGATCA | 2 cut(s) | 2419, 4642 |
| LweI | GCATC | 8 cut(s) | 481, 1999, 2163, 2526, 3019, 4210, 4374, 4584 |
| MaeII | ACGT | 5 cut(s) | 399, 926, 1209, 2626, 2821 |
| MfeI | CAATTG | 3 cut(s) | 219, 3522, 5553 |
| MflI | RGATCY | 7 cut(s) | 1763, 3274, 3398, 3766, 5026, 5107, 5652 |
| MhlI | GDGCHC | 5 cut(s) | 3746, 3781, 4395, 4780, 5214 |
| MlsI | TGGCCA | 4 cut(s) | 485, 1626, 1863, 4624 |
| MluNI | TGGCCA | 4 cut(s) | 485, 1626, 1863, 4624 |
| Mly113I | GGCGCC | 1 cut(s) | 3289 |
| MmeI | TCCRAC | 3 cut(s) | 323, 4489, 4570 |
| Mox20I | TGGCCA | 4 cut(s) | 485, 1626, 1863, 4624 |
| Mph1103I | ATGCAT | 1 cut(s) | 3014 |
| MroXI | GAANNNNTTC | 4 cut(s) | 499, 719, 3936, 4458 |
| MscI | TGGCCA | 4 cut(s) | 485, 1626, 1863, 4624 |
| MslI | CAYNNNNRTG | 5 cut(s) | 624, 1044, 1834, 3795, 3867 |
| Msp20I | TGGCCA | 4 cut(s) | 485, 1626, 1863, 4624 |
| MspA1I | CMGCKG | 3 cut(s) | 389, 3988, 4835 |
| MspI | CCGG | 5 cut(s) | 29, 68, 4011, 4493, 4793 |
| MspR9I | CCNGG | 9 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 4493, 4794, 5313 |
| MunI | CAATTG | 3 cut(s) | 219, 3522, 5553 |
| Mva1269I | GAATGC | 3 cut(s) | 619, 1174, 3012 |
| MvaI | CCWGG | 7 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 5313 |
| MvnI | CGCG | 2 cut(s) | 576, 578 |
| NarI | GGCGCC | 1 cut(s) | 3289 |
| NciI | CCSGG | 2 cut(s) | 4493, 4794 |
| NcoI | CCATGG | 1 cut(s) | 4357 |
| NdeI | CATATG | 1 cut(s) | 3772 |
| NheI | GCTAGC | 1 cut(s) | 4312 |
| NsiI | ATGCAT | 1 cut(s) | 3014 |
| OliI | CACNNNNGTG | 2 cut(s) | 1834, 3795 |
| PaeI | GCATGC | 2 cut(s) | 2800, 3964 |
| PaqCI | CACCTGC | 3 cut(s) | 901, 4171, 5340 |
| PauI | GCGCGC | 1 cut(s) | 574 |
| PciI | ACATGT | 2 cut(s) | 2246, 5124 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3511 |
| PctI | GAATGC | 3 cut(s) | 619, 1174, 3012 |
| PdmI | GAANNNNTTC | 4 cut(s) | 499, 719, 3936, 4458 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1441, 5495 |
| PfoI | TCCNGGA | 2 cut(s) | 3131, 3940 |
| PinAI | ACCGGT | 1 cut(s) | 67 |
| PluTI | GGCGCC | 1 cut(s) | 3292 |
| PpuMI | RGGWCCY | 2 cut(s) | 2717, 4537 |
| PscI | ACATGT | 2 cut(s) | 2246, 5124 |
| PsiI | TTATAA | 1 cut(s) | 4253 |
| Psp124BI | GAGCTC | 1 cut(s) | 3746 |
| Psp5II | RGGWCCY | 2 cut(s) | 2717, 4537 |
| Psp6I | CCWGG | 7 cut(s) | 301, 1626, 1839, 3131, 3401, 3940, 5311 |
| PspFI | CCCAGC | 3 cut(s) | 800, 1077, 3827 |
| PspGI | CCWGG | 7 cut(s) | 301, 1626, 1839, 3131, 3401, 3940, 5311 |
| PspPI | GGNCC | 5 cut(s) | 48, 828, 2717, 4537, 4796 |
| PspPPI | RGGWCCY | 2 cut(s) | 2717, 4537 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4804, 4836 |
| PstI | CTGCAG | 5 cut(s) | 394, 412, 1525, 3235, 4834 |
| PstNI | CAGNNNCTG | 5 cut(s) | 995, 1441, 3704, 4186, 5159 |
| PsuI | RGATCY | 7 cut(s) | 1763, 3274, 3398, 3766, 5026, 5107, 5652 |
| PteI | GCGCGC | 1 cut(s) | 574 |
| PvuII | CAGCTG | 3 cut(s) | 389, 3988, 4835 |
| RseI | CAYNNNNRTG | 5 cut(s) | 624, 1044, 1834, 3795, 3867 |
| SacI | GAGCTC | 1 cut(s) | 3746 |
| SalI | GTCGAC | 2 cut(s) | 2777, 5196 |
| Sau96I | GGNCC | 5 cut(s) | 48, 828, 2717, 4537, 4796 |
| ScaI | AGTACT | 1 cut(s) | 5660 |
| ScrFI | CCNGG | 9 cut(s) | 303, 1628, 1841, 3133, 3403, 3942, 4493, 4794, 5313 |
| SduI | GDGCHC | 5 cut(s) | 3746, 3781, 4395, 4780, 5214 |
| SfaNI | GCATC | 8 cut(s) | 481, 1999, 2163, 2526, 3019, 4210, 4374, 4584 |
| SfcI | CTRYAG | 9 cut(s) | 390, 408, 930, 1521, 2139, 3231, 4026, 4830, 4836 |
| SfoI | GGCGCC | 1 cut(s) | 3290 |
| SinI | GGWCC | 3 cut(s) | 48, 2717, 4537 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 624, 1044, 1834, 3795, 3867 |
| SphI | GCATGC | 2 cut(s) | 2800, 3964 |
| SsiI | CCGC | 6 cut(s) | 275, 560, 578, 2456, 2936, 3282 |
| SspDI | GGCGCC | 1 cut(s) | 3288 |
| SspI | AATATT | 5 cut(s) | 1778, 1789, 2052, 4108, 5628 |
| SstI | GAGCTC | 1 cut(s) | 3746 |
| StyD4I | CCNGG | 9 cut(s) | 301, 1626, 1839, 3131, 3401, 3940, 4491, 4792, 5311 |
| StyI | CCWWGG | 6 cut(s) | 59, 2767, 3642, 4357, 5130, 5564 |
| TaiI | ACGT | 5 cut(s) | 402, 929, 1212, 2629, 2824 |
| TaqII | GACCGA | 2 cut(s) | 36, 3205 |
| TatI | WGTACW | 6 cut(s) | 172, 2381, 3370, 5601, 5658, 5705 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1441, 5495 |
| VpaK11BI | GGWCC | 3 cut(s) | 48, 2717, 4537 |
| XapI | RAATTY | 8 cut(s) | 2056, 2188, 2537, 3182, 3901, 4323, 4967, 5326 |
| XbaI | TCTAGA | 1 cut(s) | 1315 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 147, 2236 |
| XmiI | GTMKAC | 3 cut(s) | 929, 2778, 5197 |
| XmnI | GAANNNNTTC | 4 cut(s) | 499, 719, 3936, 4458 |
| ZrmI | AGTACT | 1 cut(s) | 5660 |
| Zsp2I | ATGCAT | 1 cut(s) | 3014 |