Rmu_sc0001674.1_g000006

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001674.1
OG0000036
Physical Location & Seq
Reverse (-)
20475 .. 24851
4377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001674.1_g000006.1.cds

Sequence Viewer

Length: 3432 bp
atggctcctgttagaattcaagaaccctcctctaccaatgcatcacctttaccatgtagttatcatgtgttcttgagttttagaggccaagacactcgaaagacattcactgaccacctctatacagctctggtcaatgctggatttcgcactttccgagatgatgacgaactggaaagaggccaagatataaagccagagctagagaaagctatccaactgtcacgaagttctatcattgtgttttctaaagactacacatcttctgcatggtgtctggacgagcttgtcaggattcttgaacgcaagaggacctccgatcatgttgtgttaccagtgttctacgatattgatccatcccatgtgaggaaacagactggaagtgtcggaaaagcacttgccagacatggaaaagagcaatcaccggagaagttgcataggtggaggacagcacttaaagaagttgcagatctagcaggcatggtgctacaaaatcaaagtgatgggcacgagtcaaagtttatcaagaaaattgttgaagtgattgaggagaaattatgtcgcatacccttaagtgttgacccttatctggtcggaatccaatattgggttgaaagcattaattcatggttacaagatggatcatctgatgttggcatacttggcatttatggaattggtgggataggaaagacaaccattgcacaagttgtatataattcaagtttcaaaaaatttgaaggtgtggaaatacatatggttgctgagggaataaatcggatcaaagatatcataggctctaaaaaagttcttcttgttctagatgatgtggatcatagggatcaattacaagcaatatttagcatgcgaaattgcttttgtccaggaagtaaaatcattataacgaccagacgtccagggctgctaaagctttataatgatgttaaggagtattgcattggaactctagatagtgatgaatcattgaaactattctgttggtacgcttttggacagaaccatccaattgatgcctacatcgaactttcgaaaagggtcgtacaccacataggaggacttccattagctctgaaaactttgggttcttctttgacagggcaaagtgtagatgtatgggaaagtcaactacagaagttggaaacttttccaaacactgatatcctaaagaaactgaggatgagctatgatgccttaccagatgaccatgacaaaaatgtatttctccatattgcatgttactttattggaaaggaaaagcatgtgatcatcaagatactagatggatgcggtttctcctcaattgttggcattcaaaatctcattgatagatgtttgctaacaattgatggatacaatcatgaggtgaatatgcatcaaatgattcgtgatatgggaagagaaattgttcgcctagaatgtgcaaagtatccagagaaacgtagtaggttatggtatcatgaagattctctcaatgtgttgagagaaaagaatggttctgaaacaattgaaggtcttgctctgaatatgcatatggacactgcagacaatgcttcaagaatttcagatatggaagtcttggaaacaaatgcatttacaagcatgcacagactacaattactccaactttttggtgtacaactgaatggaggttatgaggactttcctaaacacttgagatggttgtgttggcttcaattccctttacactccatacccagtcattttgttttagagaacctggttgttcttgaaatgcagaatagcagcttgagacaagtctggaagggaacaaagcatcttccatcactgaagatccttgatctcagccattctagcgaccttacggaaactggtgacttctcattggttccaaatctagagagactgtttcttgaagattgcagaaatttggttcatgtccacaaatccattgggaagctaaagaaacttgtttacttgaatatgaaaaaatgccaaaaaattgaaaagcttccgaaggacattttgctgaaatcacttgaaacacttactttgtccggttgctcaaatctttatgagtttccaatggaaatgaggaatatgatatctctgaaagttcttgaagccgatgaagttccaataaatcgaatactcgctagggagctcaagtcatggccaccaatggataaacgtattgataatttttgggcttcttttccctgcactttagttgagttaagtcttgcagactgcaaactttctgttgatgcttttcctagggattttggtaacttatcctcactgaagaaactgtatctatgtgagaatccaatttgtagcttacctgattgtatcagaggccttggagggctagattaccttggattttcgcggattacttttcaatcgatttcatgcttaccaaagagtatatctgcgtattgtcggaagtccaatgtagttgagattggttactggtacaagttagtacctattggattcgttgacatagaaatgatcaaccttttgggcttgtcccacttgaaatccattgaacccgttttattgtccatccctgcaggacacagctcttcaaatcacctaatgcttcccatccagggactgtatgagtatgatatattcagcacatttttttatggaaatgaggacgatgttccagggcagttcagtaatagatttgtgggaccatcctcaaaatcttttagagtgcctaatctcaggatccgaggcttgaacatcttctctgtctataaaagttcacataactattcacctcaggatgtattaattaccgaaatcaacaataagagcaagcgtctgaagtggatctatgggccttcatgctatggcattccaactgaagaaaataatgtgatatggttaagccactggaagttgaggaatcagttggaagctggcgacgaagtcactgtttcagtacatatgggtacgcggtatagttgccttgagataaaagagtggggattcgagattgtgcatgaggcagaagaccaccaacacgtcaccgcaacagatgcaaatcttaatgaggacgacaatcttttgttagaagcctatcaggtggtgccaggaacatacttcctccgtggtggacctatggaattcaataggagaaattttaatctttggtgtccttatgaacaatatgccaagtacatagaaaaagagacacaatggagggagattcacgaaatgcttctcttgttaacaattaaagcagcgagagccggcactaacagctgcggttgcagagaaggcaagatcgccagagccaagaaggtcatcattggggttgtcgcactcgctccaatcactcacttctgtgtttttcttttcatagtttatcaacttacatatatttggactctacatggattgatgcaacggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1143

Amino Acids

130.59

Weight (kDa)

6.79

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 902, 936
AasI GACNNNNNNGTC 1 cut(s) 287
AatII GACGTC 1 cut(s) 916
AccB1I GGYRCC 1 cut(s) 3106
AccII CGCG 2 cut(s) 2392, 2974
AciI CCGC 5 cut(s) 1308, 2392, 2974, 3048, 3285
AclWI GGATC 9 cut(s) 347, 649, 788, 840, 849, 1828, 2737, 2750, 2855
AcoI YGGCCR 1 cut(s) 2174
AcsI RAATTY 6 cut(s) 15, 734, 1578, 1927, 3143, 3157
AcuI CTGAAG 4 cut(s) 1850, 2324, 2861, 2901
AcyI GRCGYC 1 cut(s) 913
AfaI GTAC 8 cut(s) 1004, 1062, 1656, 2480, 2490, 2961, 2971, 3197
AfiI CCNNNNNNNGG 4 cut(s) 366, 589, 607, 2618
AflII CTTAAG 1 cut(s) 571
AflIII ACRYGT 1 cut(s) 3040
AhdI GACNNNNNGTC 1 cut(s) 912
AjiI CACGTC 1 cut(s) 3043
AjnI CCWGG 6 cut(s) 883, 916, 1758, 2616, 2677, 3109
AjuI GAANNNNNNNTTGG 2 cut(s) 589, 621
AleI CACNNNNGTG 1 cut(s) 3363
Alw21I GWGCWC 1 cut(s) 2166
Alw26I GTCTC 3 cut(s) 1786, 1897, 3203
AlwI GGATC 9 cut(s) 347, 649, 788, 840, 849, 1828, 2737, 2750, 2855
AlwNI CAGNNNCTG 1 cut(s) 2623
AoxI GGCC 5 cut(s) 85, 181, 2174, 2359, 2855
ApeKI GCWGC 4 cut(s) 922, 1785, 3260, 3282
ApoI RAATTY 6 cut(s) 15, 734, 1578, 1927, 3143, 3157
AseI ATTAAT 2 cut(s) 621, 2807
Asp700I GAANNNNTTC 6 cut(s) 992, 1164, 1425, 2010, 2759, 3237
AspA2I CCTAGG 1 cut(s) 2276
AspS9I GGNCC 4 cut(s) 312, 2705, 2855, 3134
AsuHPI GGTGA 7 cut(s) 36, 414, 1396, 1886, 2591, 2784, 3037
AsuII TTCGAA 1 cut(s) 1049
AvaII GGWCC 3 cut(s) 312, 2705, 3134
AvrII CCTAGG 1 cut(s) 2276
AxyI CCTNAGG 1 cut(s) 2796
BaeGI GKGCMC 1 cut(s) 510
BalI TGGCCA 1 cut(s) 2176
BamHI GGATCC 1 cut(s) 2742
BanI GGYRCC 1 cut(s) 3106
BanII GRGCYC 1 cut(s) 2166
BauI CACGAG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 3036
Bbv12I GWGCWC 1 cut(s) 2166
BbvCI CCTCAGC 1 cut(s) 765
BbvI GCAGC 4 cut(s) 909, 1797, 3269, 3272
BciT130I CCWGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
BciVI GTATCC 2 cut(s) 1364, 1458
BclI TGATCA 2 cut(s) 1284, 2517
BcoDI GTCTC 3 cut(s) 1786, 1897, 3203
BfmI CTRYAG 3 cut(s) 1148, 1560, 2577
BfrI CTTAAG 1 cut(s) 571
BfuI GTATCC 2 cut(s) 1364, 1458
BglII AGATCT 1 cut(s) 469
BisI GCNGC 4 cut(s) 923, 1786, 3261, 3283
BlnI CCTAGG 1 cut(s) 2276
BlsI GCNGC 4 cut(s) 924, 1787, 3262, 3284
Bme1390I CCNGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
Bme18I GGWCC 3 cut(s) 312, 2705, 3134
BmeRI GACNNNNNGTC 1 cut(s) 912
BmgBI CACGTC 1 cut(s) 3043
BmgT120I GGNCC 4 cut(s) 312, 2705, 2855, 3134
BmiI GGNNCC 5 cut(s) 6, 1890, 2706, 2744, 3108
BmrFI CCNGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
BmrI ACTGGG 1 cut(s) 1731
BmsI GCATC 9 cut(s) 50, 1021, 1198, 1295, 1402, 1825, 2257, 3046, 3411
BmuI ACTGGG 1 cut(s) 1731
BpiI GAAGAC 1 cut(s) 3036
Bpu10I CCTNAGC 1 cut(s) 765
Bpu14I TTCGAA 1 cut(s) 1049
BpuEI CTTGAG 5 cut(s) 94, 1714, 1810, 2150, 3008
Bsa29I ATCGAT 1 cut(s) 2408
BsaBI GATNNNNATC 3 cut(s) 351, 831, 3060
BsaHI GRCGYC 1 cut(s) 913
BsaJI CCNNGG 8 cut(s) 917, 2276, 2362, 2380, 2617, 2678, 2746, 3127
BsaWI WCCGGW 2 cut(s) 424, 2057
BsaXI ACNNNNNCTCC 4 cut(s) 1623, 1653, 2153, 2183
Bsc4I CCNNNNNNNGG 4 cut(s) 366, 589, 607, 2618
Bse118I RCCGGY 1 cut(s) 3269
Bse1I ACTGG 7 cut(s) 177, 335, 382, 1737, 1876, 2480, 2915
Bse21I CCTNAGG 1 cut(s) 2796
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 3 cut(s) 351, 831, 3060
BseBI CCWGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
BseCI ATCGAT 1 cut(s) 2408
BseDI CCNNGG 8 cut(s) 917, 2276, 2362, 2380, 2617, 2678, 2746, 3127
BseGI GGATG 8 cut(s) 356, 1021, 1203, 1310, 2571, 2613, 2708, 2806
BseJI GATNNNNATC 3 cut(s) 351, 831, 3060
BseLI CCNNNNNNNGG 4 cut(s) 366, 589, 607, 2618
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 5 cut(s) 756, 1184, 1858, 2752, 2810
BseNI ACTGG 7 cut(s) 177, 335, 382, 1737, 1876, 2480, 2915
BseRI GAGGAG 3 cut(s) 19, 563, 1306
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 4 cut(s) 909, 1797, 3269, 3272
BsgI GTGCAG 1 cut(s) 2206
Bsh1236I CGCG 2 cut(s) 2392, 2974
BshFI GGCC 5 cut(s) 87, 183, 2176, 2361, 2857
BshNI GGYRCC 1 cut(s) 3106
BshVI ATCGAT 1 cut(s) 2408
BsiHKAI GWGCWC 1 cut(s) 2166
BsiSI CCGG 3 cut(s) 425, 2058, 3270
BslFI GGGAC 3 cut(s) 2521, 2634, 2718
BslI CCNNNNNNNGG 4 cut(s) 366, 589, 607, 2618
BsmAI GTCTC 3 cut(s) 1786, 1897, 3203
BsmFI GGGAC 3 cut(s) 2521, 2634, 2718
BsmI GAATGC 2 cut(s) 1329, 2871
BsnI GGCC 5 cut(s) 87, 183, 2176, 2361, 2857
Bsp119I TTCGAA 1 cut(s) 1049
Bsp1286I GDGCHC 2 cut(s) 510, 2166
Bsp1407I TGTACA 1 cut(s) 1654
BspACI CCGC 5 cut(s) 1308, 2392, 2974, 3048, 3285
BspANI GGCC 5 cut(s) 87, 183, 2176, 2361, 2857
BspCNI CTCAG 5 cut(s) 757, 1185, 1857, 2751, 2809
BspDI ATCGAT 1 cut(s) 2408
BspFNI CGCG 2 cut(s) 2392, 2974
BspHI TCATGA 2 cut(s) 1378, 1477
BspLI GGNNCC 5 cut(s) 6, 1890, 2706, 2744, 3108
BspMAI CTGCAG 2 cut(s) 1564, 2581
BspPI GGATC 9 cut(s) 347, 649, 788, 840, 849, 1828, 2737, 2750, 2855
BspQI GCTCTTC 1 cut(s) 2596
BspT104I TTCGAA 1 cut(s) 1049
BspT107I GGYRCC 1 cut(s) 3106
BspTI CTTAAG 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 3269
BsrGI TGTACA 1 cut(s) 1654
BsrI ACTGG 7 cut(s) 177, 335, 382, 1737, 1876, 2480, 2915
BssAI RCCGGY 1 cut(s) 3269
BssECI CCNNGG 8 cut(s) 917, 2276, 2362, 2380, 2617, 2678, 2746, 3127
BssNI GRCGYC 1 cut(s) 913
BssSI CACGAG 1 cut(s) 509
BssT1I CCWWGG 3 cut(s) 2276, 2362, 2380
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
Bst4CI ACNGT 6 cut(s) 222, 1908, 2313, 2625, 2953, 3429
Bst6I CTCTTC 2 cut(s) 1411, 2596
BstACI GRCGYC 1 cut(s) 913
BstAFI CTTAAG 1 cut(s) 571
BstAPI GCANNNNNTGC 2 cut(s) 1568, 3056
BstAUI TGTACA 1 cut(s) 1654
BstBI TTCGAA 1 cut(s) 1049
BstC8I GCNNGC 6 cut(s) 478, 866, 1622, 2834, 2938, 3271
BstDEI CTNAG 5 cut(s) 765, 1193, 1844, 2738, 2796
BstDSI CCRYGG 1 cut(s) 3127
BstF5I GGATG 8 cut(s) 356, 1021, 1203, 1310, 2571, 2613, 2708, 2806
BstFNI CGCG 2 cut(s) 2392, 2974
BstMAI GTCTC 3 cut(s) 1786, 1897, 3203
BstNI CCWGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
BstNSI RCATGY 4 cut(s) 868, 1257, 1283, 1624
BstSCI CCNGG 6 cut(s) 883, 916, 1758, 2616, 2677, 3109
BstSFI CTRYAG 3 cut(s) 1148, 1560, 2577
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 2 cut(s) 2392, 2974
BstV1I GCAGC 4 cut(s) 909, 1797, 3269, 3272
BstV2I GAAGAC 1 cut(s) 3036
BstX2I RGATCY 4 cut(s) 469, 1833, 2742, 2847
BstXI CCANNNNNNTGG 1 cut(s) 1649
BstYI RGATCY 4 cut(s) 469, 1833, 2742, 2847
Bsu15I ATCGAT 1 cut(s) 2408
Bsu36I CCTNAGG 1 cut(s) 2796
BsuI GTATCC 2 cut(s) 1364, 1458
BsuRI GGCC 5 cut(s) 87, 183, 2176, 2361, 2857
BsuTUI ATCGAT 1 cut(s) 2408
BtgI CCRYGG 1 cut(s) 3127
BtrI CACGTC 1 cut(s) 3043
BtsCI GGATG 8 cut(s) 356, 1021, 1203, 1310, 2571, 2613, 2708, 2806
BtsI GCAGTG 1 cut(s) 1557
BtsIMutI CAGTG 8 cut(s) 108, 342, 1173, 1557, 1826, 2300, 2908, 2949
Cac8I GCNNGC 6 cut(s) 478, 866, 1622, 2834, 2938, 3271
CaiI CAGNNNCTG 1 cut(s) 2623
CciI TCATGA 2 cut(s) 1378, 1477
Cfr10I RCCGGY 1 cut(s) 3269
Cfr13I GGNCC 4 cut(s) 312, 2705, 2855, 3134
ClaI ATCGAT 1 cut(s) 2408
CseI GACGC 1 cut(s) 2825
CsiI ACCWGGT 1 cut(s) 1758
Csp6I GTAC 8 cut(s) 1003, 1061, 1655, 2479, 2489, 2960, 2970, 3196
CviQI GTAC 8 cut(s) 1003, 1061, 1655, 2479, 2489, 2960, 2970, 3196
DdeI CTNAG 5 cut(s) 765, 1193, 1844, 2738, 2796
DrdI GACNNNNNNGTC 1 cut(s) 287
DriI GACNNNNNGTC 1 cut(s) 912
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 2174
Eam1104I CTCTTC 2 cut(s) 1411, 2596
Eam1105I GACNNNNNGTC 1 cut(s) 912
EarI CTCTTC 2 cut(s) 1411, 2596
Ecl136II GAGCTC 1 cut(s) 2164
Eco130I CCWWGG 3 cut(s) 2276, 2362, 2380
Eco147I AGGCCT 1 cut(s) 2361
Eco24I GRGCYC 1 cut(s) 2166
Eco32I GATATC 3 cut(s) 790, 1180, 2106
Eco47I GGWCC 3 cut(s) 312, 2705, 3134
Eco53kI GAGCTC 1 cut(s) 2164
Eco57I CTGAAG 4 cut(s) 1850, 2324, 2861, 2901
Eco81I CCTNAGG 1 cut(s) 2796
EcoICRI GAGCTC 1 cut(s) 2164
EcoO109I RGGNCCY 1 cut(s) 312
EcoRI GAATTC 2 cut(s) 15, 3143
EcoRII CCWGG 6 cut(s) 883, 916, 1758, 2616, 2677, 3109
EcoRV GATATC 3 cut(s) 790, 1180, 2106
EcoT14I CCWWGG 3 cut(s) 2276, 2362, 2380
EcoT22I ATGCAT 4 cut(s) 43, 1395, 1551, 1612
EcoT38I GRGCYC 1 cut(s) 2166
ErhI CCWWGG 3 cut(s) 2276, 2362, 2380
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 3 cut(s) 2521, 2634, 2718
FauNDI CATATG 3 cut(s) 756, 1551, 2964
FbaI TGATCA 2 cut(s) 1284, 2517
Fnu4HI GCNGC 4 cut(s) 923, 1786, 3261, 3283
FokI GGATG 8 cut(s) 343, 1008, 1210, 1317, 2558, 2600, 2695, 2813
FriOI GRGCYC 1 cut(s) 2166
Fsp4HI GCNGC 4 cut(s) 923, 1786, 3261, 3283
GluI GCNGC 4 cut(s) 923, 1786, 3261, 3283
HaeIII GGCC 5 cut(s) 87, 183, 2176, 2361, 2857
HapII CCGG 3 cut(s) 425, 2058, 3270
HgaI GACGC 1 cut(s) 2825
Hin1I GRCGYC 1 cut(s) 913
HincII GTYRAC 4 cut(s) 580, 1145, 2506, 3249
HindII GTYRAC 4 cut(s) 580, 1145, 2506, 3249
HindIII AAGCTT 2 cut(s) 929, 2009
HpaI GTTAAC 1 cut(s) 3249
HpaII CCGG 3 cut(s) 425, 2058, 3270
HphI GGTGA 7 cut(s) 36, 414, 1396, 1886, 2591, 2784, 3037
Hpy99I CGWCG 1 cut(s) 2945
HpyAV CCTTC 7 cut(s) 734, 1523, 1798, 2011, 2868, 3290, 3313
HpyCH4III ACNGT 6 cut(s) 222, 1908, 2313, 2625, 2953, 3429
HpyCH4IV ACGT 4 cut(s) 913, 1459, 2191, 3042
HpyF3I CTNAG 5 cut(s) 765, 1193, 1844, 2738, 2796
HpySE526I ACGT 4 cut(s) 913, 1459, 2191, 3042
Hsp92I GRCGYC 1 cut(s) 913
KroI GCCGGC 1 cut(s) 3269
KroNI GCCGGC 1 cut(s) 3271
Ksp22I TGATCA 2 cut(s) 1284, 2517
KspAI GTTAAC 1 cut(s) 3249
LguI GCTCTTC 1 cut(s) 2596
LmnI GCTCC 3 cut(s) 10, 2161, 3352
Lsp1109I GCAGC 4 cut(s) 909, 1797, 3269, 3272
LweI GCATC 9 cut(s) 50, 1021, 1198, 1295, 1402, 1825, 2257, 3046, 3411
MabI ACCWGGT 1 cut(s) 1758
MaeII ACGT 4 cut(s) 913, 1459, 2191, 3042
MaeIII GTNAC 9 cut(s) 222, 330, 630, 1256, 1874, 2288, 2471, 2947, 3043
MfeI CAATTG 4 cut(s) 1026, 1320, 1362, 1524
MflI RGATCY 4 cut(s) 469, 1833, 2742, 2847
MhlI GDGCHC 2 cut(s) 510, 2166
MlsI TGGCCA 1 cut(s) 2176
MluNI TGGCCA 1 cut(s) 2176
MlyI GAGTC 2 cut(s) 521, 3400
MmeI TCCRAC 8 cut(s) 241, 367, 574, 1137, 1666, 2426, 2900, 2910
Mox20I TGGCCA 1 cut(s) 2176
Mph1103I ATGCAT 4 cut(s) 43, 1395, 1551, 1612
MroNI GCCGGC 1 cut(s) 3269
MroXI GAANNNNTTC 6 cut(s) 992, 1164, 1425, 2010, 2759, 3237
MscI TGGCCA 1 cut(s) 2176
MslI CAYNNNNRTG 2 cut(s) 2513, 3363
Msp20I TGGCCA 1 cut(s) 2176
MspA1I CMGCKG 1 cut(s) 3282
MspCI CTTAAG 1 cut(s) 571
MspI CCGG 3 cut(s) 425, 2058, 3270
MspR9I CCNGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
MunI CAATTG 4 cut(s) 1026, 1320, 1362, 1524
Mva1269I GAATGC 2 cut(s) 1329, 2871
MvaI CCWGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
MvnI CGCG 2 cut(s) 2392, 2974
NaeI GCCGGC 1 cut(s) 3271
NdeI CATATG 3 cut(s) 756, 1551, 2964
NgoMIV GCCGGC 1 cut(s) 3269
NlaIV GGNNCC 5 cut(s) 6, 1890, 2706, 2744, 3108
NmuCI GTSAC 4 cut(s) 222, 1874, 2947, 3043
NsiI ATGCAT 4 cut(s) 43, 1395, 1551, 1612
NspI RCATGY 4 cut(s) 868, 1257, 1283, 1624
NspV TTCGAA 1 cut(s) 1049
OliI CACNNNNGTG 1 cut(s) 3363
PaeI GCATGC 2 cut(s) 868, 1624
PagI TCATGA 2 cut(s) 1378, 1477
PceI AGGCCT 1 cut(s) 2361
PciSI GCTCTTC 1 cut(s) 2596
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PctI GAATGC 2 cut(s) 1329, 2871
PdiI GCCGGC 1 cut(s) 3271
PdmI GAANNNNTTC 6 cut(s) 992, 1164, 1425, 2010, 2759, 3237
PflFI GACNNNGTC 1 cut(s) 2945
PfoI TCCNGGA 1 cut(s) 883
PkrI GCNGC 4 cut(s) 924, 1787, 3262, 3284
PleI GAGTC 2 cut(s) 520, 3400
PpsI GAGTC 2 cut(s) 520, 3400
PpuMI RGGWCCY 1 cut(s) 312
PshBI ATTAAT 2 cut(s) 621, 2807
PsiI TTATAA 2 cut(s) 902, 936
Psp124BI GAGCTC 1 cut(s) 2166
Psp5II RGGWCCY 1 cut(s) 312
Psp6I CCWGG 6 cut(s) 883, 916, 1758, 2616, 2677, 3109
PspGI CCWGG 6 cut(s) 883, 916, 1758, 2616, 2677, 3109
PspN4I GGNNCC 5 cut(s) 6, 1890, 2706, 2744, 3108
PspPI GGNCC 4 cut(s) 312, 2705, 2855, 3134
PspPPI RGGWCCY 1 cut(s) 312
PstI CTGCAG 2 cut(s) 1564, 2581
PstNI CAGNNNCTG 1 cut(s) 2623
PsuI RGATCY 4 cut(s) 469, 1833, 2742, 2847
PsyI GACNNNGTC 1 cut(s) 2945
PvuII CAGCTG 1 cut(s) 3282
RsaI GTAC 8 cut(s) 1004, 1062, 1656, 2480, 2490, 2961, 2971, 3197
RsaNI GTAC 8 cut(s) 1003, 1061, 1655, 2479, 2489, 2960, 2970, 3196
RseI CAYNNNNRTG 2 cut(s) 2513, 3363
SacI GAGCTC 1 cut(s) 2166
SapI GCTCTTC 1 cut(s) 2596
SatI GCNGC 4 cut(s) 923, 1786, 3261, 3283
Sau96I GGNCC 4 cut(s) 312, 2705, 2855, 3134
SbfI CCTGCAGG 1 cut(s) 2581
SchI GAGTC 2 cut(s) 521, 3400
ScrFI CCNGG 6 cut(s) 885, 918, 1760, 2618, 2679, 3111
SdaI CCTGCAGG 1 cut(s) 2581
SduI GDGCHC 2 cut(s) 510, 2166
SexAI ACCWGGT 1 cut(s) 1758
SfaNI GCATC 9 cut(s) 50, 1021, 1198, 1295, 1402, 1825, 2257, 3046, 3411
SfcI CTRYAG 3 cut(s) 1148, 1560, 2577
SfuI TTCGAA 1 cut(s) 1049
SinI GGWCC 3 cut(s) 312, 2705, 3134
SmiMI CAYNNNNRTG 2 cut(s) 2513, 3363
SmlI CTYRAG 6 cut(s) 73, 571, 1693, 1789, 2165, 2987
SmoI CTYRAG 6 cut(s) 73, 571, 1693, 1789, 2165, 2987
SphI GCATGC 2 cut(s) 868, 1624
Sse8387I CCTGCAGG 1 cut(s) 2581
SseBI AGGCCT 1 cut(s) 2361
SsiI CCGC 5 cut(s) 1308, 2392, 2974, 3048, 3285
SspI AATATT 2 cut(s) 605, 858
SstI GAGCTC 1 cut(s) 2166
StuI AGGCCT 1 cut(s) 2361
StyD4I CCNGG 6 cut(s) 883, 916, 1758, 2616, 2677, 3109
StyI CCWWGG 3 cut(s) 2276, 2362, 2380
TaaI ACNGT 6 cut(s) 222, 1908, 2313, 2625, 2953, 3429
TaiI ACGT 4 cut(s) 916, 1462, 2194, 3045
TaqI TCGA 6 cut(s) 97, 1041, 1049, 2146, 2408, 3009
TatI WGTACW 3 cut(s) 1654, 2959, 3195
TscAI CASTG 8 cut(s) 115, 342, 1180, 1564, 1833, 2307, 2915, 2956
TseFI GTSAC 4 cut(s) 222, 1874, 2947, 3043
TseI GCWGC 4 cut(s) 922, 1785, 3260, 3282
Tsp45I GTSAC 4 cut(s) 222, 1874, 2947, 3043
TspGWI ACGGA 2 cut(s) 1880, 3116
TspRI CASTG 8 cut(s) 115, 342, 1180, 1564, 1833, 2307, 2915, 2956
Tth111I GACNNNGTC 1 cut(s) 2945
Vha464I CTTAAG 1 cut(s) 571
VpaK11BI GGWCC 3 cut(s) 312, 2705, 3134
VspI ATTAAT 2 cut(s) 621, 2807
XapI RAATTY 6 cut(s) 15, 734, 1578, 1927, 3143, 3157
XbaI TCTAGA 3 cut(s) 820, 967, 1897
XceI RCATGY 4 cut(s) 868, 1257, 1283, 1624
XcmI CCANNNNNNNNNTGG 1 cut(s) 1949
XmaJI CCTAGG 1 cut(s) 2276
XmnI GAANNNNTTC 6 cut(s) 992, 1164, 1425, 2010, 2759, 3237
ZraI GACGTC 1 cut(s) 914
Zsp2I ATGCAT 4 cut(s) 43, 1395, 1551, 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.