Rh1AG212600

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000036
Physical Location & Seq
Forward (+)
40630603 .. 40639326
8724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG212600.1

Sequence Viewer

Length: 2844 bp
ATGGAACCCATTCTGTTGCACATCCCAGATGCAAACTTCCCATCAGAAGGGGAGTCCATGGAACCCATTCGCATCCAGGGACTACATGAATATGGTATCTTCAGCACATTCTTTCCGGGAAACGGAAATGAGGTTCCAGGACAGTTCAGCCATACAAGTAAAGGGTGTTCCTCAATATCTTATCCTGTGCCTATACTTTTTAATCACAAGATCCAAGGCTTCAACATATATTCTGTGTATGCATGGACGACAGATGTTACTACTCTATTGCCACCATTAATCATTGAAGTCAATAATAAGAGCACGGGTCTGAAGTGGATCTATGTGCCGTCATGTTACGGCATTCCAAGTGATGGAAAAGACATGATATGGTTGAGCCATTGGAGTTTGGGGAACCAATTCAAAGGTGGTGATGTCATCACTGTCTCAGTATTTACGCCAGATAACTGGCTTCAGGTAAAAGAGTTTGGTGTCCAAGTGGTGCATGAGGAAGAAGAGAAGATGAGTGAGCAACAGTACAGCAGCAGTAGTAGAGATCCTAGTTATGATGATCCCGATGCTTGTGGTGTTAATGAGGTGATTGGTAATAGTGGTGGAGTTTTGTCAGAGTTATATCAGGTCAGGCCAGGGACATACTTCCTCTGCGGTGGACCCTTTTTAGAAAATAATAGATACACATATAACAGATGGAAAAAGGATTGTTGCCTCAGTGGCATCATAGGAGAGTATGATGAAGAAACAGACAAAGAAGAAAGGAAACAGGGGGATAGGACACTAGCAGCAACAGAAGAAGCTGAAGCAGAAAGAGGCAGCAATAAATTCTTCGGTTGCAAGGGTTCAAATGCAATTGAAGGCCTTGTCCTGAACATGCCTATGAACTCTGCACATGGTCCTTCAAGAAATTCAGATATGGTGGTCTTGGATGCCAATGCATTTTCAATGATGAACAAACTCAGATTCCTTCATCTTGGTCATGTACAACTCAATGAAAGTTATGAAAAGTTTCCTAAAGGATTGAGATGGTTGTGTTGGCGCGAATGTCCTTTGAATTTAATACCGAGTGATTTTCCTATGGAGATGATGGTTGTTATTGAAATGTCCTATAGTAGATTGAGACAAGTGTGGAAGGGAGCAAAGCGTCTTCCATCATTGAAGATCTTTGATCTCAGCCATTCCTCAAACCTTACTGAAACTGGTGACTTCTCATTGGTCCAGAATCTGGAGAGACTTACTCTTAAACATTGTATAAGCTTAGTTGATGTCCATGAATCCGTAGGAAAGCTAGAGAAACTTGTTTACTTGAATTTGAAAGATTGCATCAATATCACGAAGCTTCCAGAGAACATTCATATGTTAAAATCTCTTGAAACACTTATTATATCAGGTTGTTCAAATCTTAGCGAGTTTCCAATGGAGATTAGAAACATGGAATCTCTAAAAGTGTTTCAAGCATTTGGAGTTCCAATAGATCAGCTAATCACTATCCCTGGGCAGGTAAATACACGATCAAGATTAAGTGTAGATGGTTTATGGGGTTCCTTTTCTGGCTCTATTGTTGAGTTAGATCTTGGAAGCTGCAATCTTTCTGATGATGCTTTTCCTAGTGATTTGGGTAACTTAGCTTCATTGAGGTATTTGGATCTCAGCTACAATCCCATTTGTACCTTGCCAGATTCAATCAGAGGCCTTTGGAAACTCGAGACGCTTACTCTGAGTTACTGTACAAGTCTCAGATCAATTACAGGTCTACCACGAGTAAGAGATCTACTGAGCGCAGACCATTGTGTATCCTTGGAAAAAATAACATTTCAATCACTTTCATGCATACCAAAGAGATTGTCCATATATGGTGACTCCAAACTAGTTGAGATTCAGCACTGGTACAAGTTAAAACCTATTGGAACAGTTGATGTAGAAATGATCAGACTTTTGGGTTTGTCCGACTTGGAATCCATGGAACCCATTCTGATGCACACCCCAGATGCAAAATCCCCGTCGGAAGGGGAATCCATGGAACCCATTCACATCCAGGGACTGCATGAATATGGTATCTTCAGCACATTCTTTTCGGGAAACGGAAATGAGGTTCCAGGACAGTTCAGCCATACAAGTAAAGGGTGTTCCTCAATATCATTTCCTGTGCCTATACTTCTTAATCACAAGATCCGGGGCTTCAACATATATTCTGTGTATGCATGGACGACAGATGTTACTACTCTATTGCCACCATTAATCATTGAAGTCAATAATAAGAGCACGGGTCTGAAGTGGATCTATGTGCCGTCATGTTACGGCATTCCAAGTGATGGAAAAGACATGATATGGTTAAGCCATTGGAGTTTGGGGAACCAATTCAAAGGTGGCGATATAGTCACTGTCTCAATATTTACGCCAGATAACTGGCTTCAGGTAAAAGAGTTTGGTGTCCAAGTGGTGCATGAGGAAGAAGAGAAGATGAGTAAGCAACAGTACAGCAGCAGTAGTAGAGATCCTATTTATGATGATCCCGATGCTTGTGGTGTTAATGAGGTGATTGGTAATAGTGGTGGAGTTTTGTCAGAGTTATATCAGGTCAGGCCAGGGACATACTTCCTCTGCGGTGGACCCTTTTTAGAAAATAATAGATACACATTTAACAGATGGAAAAAGGATCGTTGCCTCAGTGACATCATAGGAGAGTATGATGAAGAAACAGACAAAGAAGAAAGGAAACAGGGGGATATGACACTAACAGCAACAGAAGAAGCTGAAGCAGAAAGTGGCAGCAATAAATTCTTCGGTTGCAAGAACCTTGTTATCCATGTACTTATGTCATTGGTTGAGATTTGTCAAAATATCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

947

Amino Acids

106.31

Weight (kDa)

5.08

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 404 - 482 3.5e-08 Leucine-rich repeat region
LRR_14 PF23598 521 - 581 2.5e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1483
AccB7I CCANNNNNTGG 3 cut(s) 353, 1219, 2306
AccI GTMKAC 1 cut(s) 1747
AccII CGCG 1 cut(s) 1035
AciI CCGC 2 cut(s) 645, 2598
AcsI RAATTY 5 cut(s) 818, 901, 1048, 1303, 2771
AcuI CTGAAG 8 cut(s) 85, 332, 437, 816, 2038, 2285, 2390, 2769
AfaI GTAC 7 cut(s) 518, 978, 1663, 1723, 1883, 2471, 2805
AfiI CCNNNNNNNGG 7 cut(s) 47, 122, 353, 1219, 1492, 2000, 2306
AhlI ACTAGT 1 cut(s) 1861
AjnI CCWGG 7 cut(s) 75, 136, 625, 1486, 2028, 2089, 2578
AloI GAACNNNNNNTCC 4 cut(s) 117, 149, 2070, 2102
AluBI AGCT 9 cut(s) 794, 1251, 1282, 1333, 1474, 1575, 1622, 1647, 2747
AluI AGCT 9 cut(s) 794, 1251, 1282, 1333, 1474, 1575, 1622, 1647, 2747
Alw21I GWGCWC 2 cut(s) 305, 2258
Alw26I GTCTC 6 cut(s) 430, 1108, 1219, 1694, 1733, 2383
AlwNI CAGNNNCTG 2 cut(s) 1219, 2035
Ama87I CYCGRG 1 cut(s) 1697
AoxI GGCC 4 cut(s) 623, 853, 1684, 2576
ApeKI GCWGC 6 cut(s) 522, 779, 810, 1575, 2475, 2763
ApoI RAATTY 5 cut(s) 818, 901, 1048, 1303, 2771
ArsI GACNNNNNNTTYG 4 cut(s) 1823, 1855, 1979, 2011
AseI ATTAAT 2 cut(s) 278, 2231
Asp700I GAANNNNTTC 7 cut(s) 9, 66, 398, 1002, 1962, 2019, 2351
AspLEI GCGC 2 cut(s) 1035, 1775
AspS9I GGNCC 4 cut(s) 650, 890, 1210, 2603
AsuC2I CCSGG 2 cut(s) 117, 2168
AsuHPI GGTGA 5 cut(s) 422, 589, 1208, 1862, 2542
AvaI CYCGRG 1 cut(s) 1697
AvaII GGWCC 4 cut(s) 650, 890, 1210, 2603
BarI GAAGNNNNNNTAC 2 cut(s) 1606, 1638
BauI CACGAG 1 cut(s) 1752
BbsI GAAGAC 1 cut(s) 1133
Bbv12I GWGCWC 2 cut(s) 305, 2258
BbvI GCAGC 6 cut(s) 534, 791, 822, 1562, 2487, 2775
BccI CCATC 9 cut(s) 49, 347, 681, 1014, 1075, 1153, 1517, 2300, 2634
BceAI ACGGC 4 cut(s) 313, 355, 2266, 2308
BciT130I CCWGG 7 cut(s) 77, 138, 627, 1488, 2030, 2091, 2580
BciVI GTATCC 1 cut(s) 1798
BclI TGATCA 1 cut(s) 1920
BcnI CCSGG 2 cut(s) 117, 2168
BcoDI GTCTC 6 cut(s) 430, 1108, 1219, 1694, 1733, 2383
BcuI ACTAGT 1 cut(s) 1861
BfaI CTAG 5 cut(s) 540, 776, 1283, 1602, 1862
BfmI CTRYAG 1 cut(s) 1102
BfuAI ACCTGC 1 cut(s) 1483
BfuI GTATCC 1 cut(s) 1798
BglI GCCNNNNNGGC 1 cut(s) 711
BglII AGATCT 3 cut(s) 1155, 1564, 1762
BisI GCNGC 6 cut(s) 523, 780, 811, 1576, 2476, 2764
BlsI GCNGC 6 cut(s) 524, 781, 812, 1577, 2477, 2765
Bme1390I CCNGG 9 cut(s) 77, 117, 138, 627, 1488, 2030, 2091, 2168, 2580
Bme18I GGWCC 4 cut(s) 650, 890, 1210, 2603
BmeT110I CYCGRG 1 cut(s) 1697
BmgT120I GGNCC 4 cut(s) 650, 890, 1210, 2603
BmrFI CCNGG 9 cut(s) 77, 117, 138, 627, 1488, 2030, 2091, 2168, 2580
BpiI GAAGAC 1 cut(s) 1133
BplI GAGNNNNNCTC 2 cut(s) 1216, 1248
BpmI CTGGAG 1 cut(s) 1241
BpuMI CCSGG 2 cut(s) 117, 2168
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 122, 353, 1219, 1492, 2000, 2306
Bse1I ACTGG 4 cut(s) 452, 1198, 1883, 2405
BseBI CCWGG 7 cut(s) 77, 138, 627, 1488, 2030, 2091, 2580
BseGI GGATG 4 cut(s) 21, 72, 928, 2025
BseLI CCNNNNNNNGG 7 cut(s) 47, 122, 353, 1219, 1492, 2000, 2306
BseMII CTCAG 9 cut(s) 441, 721, 967, 1180, 1657, 1703, 1744, 1760, 2674
BseNI ACTGG 4 cut(s) 452, 1198, 1883, 2405
BseXI GCAGC 6 cut(s) 534, 791, 822, 1562, 2487, 2775
BsgI GTGCAG 1 cut(s) 867
Bsh1236I CGCG 1 cut(s) 1035
BshFI GGCC 4 cut(s) 625, 855, 1686, 2578
BsiHKAI GWGCWC 2 cut(s) 305, 2258
BsiHKCI CYCGRG 1 cut(s) 1697
BsiSI CCGG 2 cut(s) 116, 2167
BslFI GGGAC 4 cut(s) 93, 643, 2046, 2596
BslI CCNNNNNNNGG 7 cut(s) 47, 122, 353, 1219, 1492, 2000, 2306
BsmAI GTCTC 6 cut(s) 430, 1108, 1219, 1694, 1733, 2383
BsmBI CGTCTC 1 cut(s) 1694
BsmFI GGGAC 4 cut(s) 93, 643, 2046, 2596
BsmI GAATGC 2 cut(s) 342, 2295
BsnI GGCC 4 cut(s) 625, 855, 1686, 2578
BsoBI CYCGRG 1 cut(s) 1697
Bsp1286I GDGCHC 2 cut(s) 305, 2258
Bsp1407I TGTACA 2 cut(s) 976, 1721
Bsp19I CCATGG 3 cut(s) 57, 1953, 2010
BspACI CCGC 2 cut(s) 645, 2598
BspANI GGCC 4 cut(s) 625, 855, 1686, 2578
BspCNI CTCAG 9 cut(s) 440, 720, 966, 1179, 1656, 1704, 1743, 1761, 2673
BspFNI CGCG 1 cut(s) 1035
BspMI ACCTGC 1 cut(s) 1483
BsrGI TGTACA 2 cut(s) 976, 1721
BsrI ACTGG 4 cut(s) 452, 1198, 1883, 2405
BssSI CACGAG 1 cut(s) 1752
BssT1I CCWWGG 5 cut(s) 57, 214, 1791, 1953, 2010
Bst2BI CACGAG 1 cut(s) 1752
Bst2UI CCWGG 7 cut(s) 77, 138, 627, 1488, 2030, 2091, 2580
Bst4CI ACNGT 8 cut(s) 144, 424, 516, 1721, 1906, 2097, 2377, 2469
Bst6I CTCTTC 2 cut(s) 489, 2442
BstAUI TGTACA 2 cut(s) 976, 1721
BstDSI CCRYGG 3 cut(s) 57, 1953, 2010
BstF5I GGATG 4 cut(s) 21, 72, 928, 2025
BstFNI CGCG 1 cut(s) 1035
BstHHI GCGC 2 cut(s) 1035, 1775
BstMAI GTCTC 6 cut(s) 430, 1108, 1219, 1694, 1733, 2383
BstMWI GCNNNNNNNGC 1 cut(s) 711
BstNI CCWGG 7 cut(s) 77, 138, 627, 1488, 2030, 2091, 2580
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 9 cut(s) 75, 115, 136, 625, 1486, 2028, 2089, 2166, 2578
BstSFI CTRYAG 1 cut(s) 1102
BstUI CGCG 1 cut(s) 1035
BstV1I GCAGC 6 cut(s) 534, 791, 822, 1562, 2487, 2775
BstV2I GAAGAC 1 cut(s) 1133
BstXI CCANNNNNNTGG 2 cut(s) 447, 2400
BsuI GTATCC 1 cut(s) 1798
BsuRI GGCC 4 cut(s) 625, 855, 1686, 2578
BtgI CCRYGG 3 cut(s) 57, 1953, 2010
BtsCI GGATG 4 cut(s) 21, 72, 928, 2025
BtsIMutI CAGTG 5 cut(s) 420, 715, 1876, 2373, 2668
BveI ACCTGC 1 cut(s) 1483
CaiI CAGNNNCTG 2 cut(s) 1219, 2035
CfoI GCGC 2 cut(s) 1035, 1775
Cfr13I GGNCC 4 cut(s) 650, 890, 1210, 2603
CseI GACGC 2 cut(s) 1127, 1711
Csp6I GTAC 7 cut(s) 517, 977, 1662, 1722, 1882, 2470, 2804
CviQI GTAC 7 cut(s) 517, 977, 1662, 1722, 1882, 2470, 2804
Eam1104I CTCTTC 2 cut(s) 489, 2442
EarI CTCTTC 2 cut(s) 489, 2442
Eco130I CCWWGG 5 cut(s) 57, 214, 1791, 1953, 2010
Eco147I AGGCCT 2 cut(s) 855, 1686
Eco47I GGWCC 4 cut(s) 650, 890, 1210, 2603
Eco57I CTGAAG 8 cut(s) 85, 332, 437, 816, 2038, 2285, 2390, 2769
Eco88I CYCGRG 1 cut(s) 1697
EcoRII CCWGG 7 cut(s) 75, 136, 625, 1486, 2028, 2089, 2578
EcoT14I CCWWGG 5 cut(s) 57, 214, 1791, 1953, 2010
EcoT22I ATGCAT 4 cut(s) 244, 934, 1826, 2197
ErhI CCWWGG 5 cut(s) 57, 214, 1791, 1953, 2010
Esp3I CGTCTC 1 cut(s) 1694
FaqI GGGAC 4 cut(s) 93, 643, 2046, 2596
FauNDI CATATG 1 cut(s) 1350
FbaI TGATCA 1 cut(s) 1920
FblI GTMKAC 1 cut(s) 1747
Fnu4HI GCNGC 6 cut(s) 523, 780, 811, 1576, 2476, 2764
FokI GGATG 4 cut(s) 8, 59, 935, 2012
Fsp4HI GCNGC 6 cut(s) 523, 780, 811, 1576, 2476, 2764
FspBI CTAG 5 cut(s) 540, 776, 1283, 1602, 1862
GlaI GCGC 2 cut(s) 1034, 1774
GluI GCNGC 6 cut(s) 523, 780, 811, 1576, 2476, 2764
GsuI CTGGAG 1 cut(s) 1241
HaeIII GGCC 4 cut(s) 625, 855, 1686, 2578
HapII CCGG 2 cut(s) 116, 2167
HgaI GACGC 2 cut(s) 1127, 1711
HhaI GCGC 2 cut(s) 1035, 1775
Hin6I GCGC 2 cut(s) 1033, 1773
HinP1I GCGC 2 cut(s) 1033, 1773
HindIII AAGCTT 2 cut(s) 1249, 1331
HpaII CCGG 2 cut(s) 116, 2167
HphI GGTGA 5 cut(s) 422, 589, 1208, 1862, 2542
Hpy166II GTNNAC 4 cut(s) 650, 1297, 1748, 2603
Hpy8I GTNNAC 4 cut(s) 650, 1297, 1748, 2603
Hpy99I CGWCG 1 cut(s) 1999
HpyAV CCTTC 6 cut(s) 41, 845, 903, 971, 1120, 1994
HpyCH4III ACNGT 8 cut(s) 144, 424, 516, 1721, 1906, 2097, 2377, 2469
HpyF10VI GCNNNNNNNGC 1 cut(s) 711
HspAI GCGC 2 cut(s) 1033, 1773
Ksp22I TGATCA 1 cut(s) 1920
LmnI GCTCC 1 cut(s) 1130
Lsp1109I GCAGC 6 cut(s) 534, 791, 822, 1562, 2487, 2775
MaeI CTAG 5 cut(s) 540, 776, 1283, 1602, 1862
MfeI CAATTG 1 cut(s) 846
MhlI GDGCHC 2 cut(s) 305, 2258
MluCI AATT 9 cut(s) 398, 818, 846, 901, 1048, 1303, 1737, 2351, 2771
MlyI GAGTC 2 cut(s) 62, 1847
MmeI TCCRAC 2 cut(s) 1965, 1977
Mph1103I ATGCAT 4 cut(s) 244, 934, 1826, 2197
MroXI GAANNNNTTC 7 cut(s) 9, 66, 398, 1002, 1962, 2019, 2351
MslI CAYNNNNRTG 6 cut(s) 90, 872, 1349, 1819, 1967, 2043
MspI CCGG 2 cut(s) 116, 2167
MspR9I CCNGG 9 cut(s) 77, 117, 138, 627, 1488, 2030, 2091, 2168, 2580
MunI CAATTG 1 cut(s) 846
Mva1269I GAATGC 2 cut(s) 342, 2295
MvaI CCWGG 7 cut(s) 77, 138, 627, 1488, 2030, 2091, 2580
MvnI CGCG 1 cut(s) 1035
MwoI GCNNNNNNNGC 1 cut(s) 711
NciI CCSGG 2 cut(s) 117, 2168
NcoI CCATGG 3 cut(s) 57, 1953, 2010
NdeI CATATG 1 cut(s) 1350
NmuCI GTSAC 4 cut(s) 1196, 1850, 2371, 2663
NsiI ATGCAT 4 cut(s) 244, 934, 1826, 2197
NspI RCATGY 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 1697
PasI CCCWGGG 1 cut(s) 1487
PceI AGGCCT 2 cut(s) 855, 1686
PctI GAATGC 2 cut(s) 342, 2295
PdmI GAANNNNTTC 7 cut(s) 9, 66, 398, 1002, 1962, 2019, 2351
PfeI GAWTC 8 cut(s) 957, 1216, 1268, 1430, 1673, 1870, 1949, 2006
PflMI CCANNNNNTGG 3 cut(s) 353, 1219, 2306
PfoI TCCNGGA 3 cut(s) 115, 136, 2089
PkrI GCNGC 6 cut(s) 524, 781, 812, 1577, 2477, 2765
PleI GAGTC 2 cut(s) 61, 1847
PpsI GAGTC 2 cut(s) 61, 1847
PshBI ATTAAT 2 cut(s) 278, 2231
Psp6I CCWGG 7 cut(s) 75, 136, 625, 1486, 2028, 2089, 2578
PspGI CCWGG 7 cut(s) 75, 136, 625, 1486, 2028, 2089, 2578
PspPI GGNCC 4 cut(s) 650, 890, 1210, 2603
PsrI GAACNNNNNNTAC 4 cut(s) 151, 183, 2104, 2136
PstNI CAGNNNCTG 2 cut(s) 1219, 2035
RsaI GTAC 7 cut(s) 518, 978, 1663, 1723, 1883, 2471, 2805
RsaNI GTAC 7 cut(s) 517, 977, 1662, 1722, 1882, 2470, 2804
RseI CAYNNNNRTG 6 cut(s) 90, 872, 1349, 1819, 1967, 2043
SatI GCNGC 6 cut(s) 523, 780, 811, 1576, 2476, 2764
Sau96I GGNCC 4 cut(s) 650, 890, 1210, 2603
SchI GAGTC 2 cut(s) 62, 1847
ScrFI CCNGG 9 cut(s) 77, 117, 138, 627, 1488, 2030, 2091, 2168, 2580
SduI GDGCHC 2 cut(s) 305, 2258
SfcI CTRYAG 1 cut(s) 1102
Sfr274I CTCGAG 1 cut(s) 1697
SinI GGWCC 4 cut(s) 650, 890, 1210, 2603
SlaI CTCGAG 1 cut(s) 1697
SmiMI CAYNNNNRTG 6 cut(s) 90, 872, 1349, 1819, 1967, 2043
SmlI CTYRAG 1 cut(s) 1697
SmoI CTYRAG 1 cut(s) 1697
SpeI ACTAGT 1 cut(s) 1861
Sse9I AATT 9 cut(s) 398, 818, 846, 901, 1048, 1303, 1737, 2351, 2771
SseBI AGGCCT 2 cut(s) 855, 1686
SsiI CCGC 2 cut(s) 645, 2598
SspI AATATT 1 cut(s) 2385
SspMI CTAG 5 cut(s) 540, 776, 1283, 1602, 1862
StuI AGGCCT 2 cut(s) 855, 1686
StyD4I CCNGG 9 cut(s) 75, 115, 136, 625, 1486, 2028, 2089, 2166, 2578
StyI CCWWGG 5 cut(s) 57, 214, 1791, 1953, 2010
TaaI ACNGT 8 cut(s) 144, 424, 516, 1721, 1906, 2097, 2377, 2469
TaqI TCGA 1 cut(s) 1698
TasI AATT 9 cut(s) 398, 818, 846, 901, 1048, 1303, 1737, 2351, 2771
TatI WGTACW 5 cut(s) 516, 976, 1721, 2469, 2803
TfiI GAWTC 8 cut(s) 957, 1216, 1268, 1430, 1673, 1870, 1949, 2006
TscAI CASTG 5 cut(s) 427, 715, 1883, 2380, 2668
TseFI GTSAC 4 cut(s) 1196, 1850, 2371, 2663
TseI GCWGC 6 cut(s) 522, 779, 810, 1575, 2475, 2763
Tsp45I GTSAC 4 cut(s) 1196, 1850, 2371, 2663
TspGWI ACGGA 3 cut(s) 138, 1261, 2091
TspRI CASTG 5 cut(s) 427, 715, 1883, 2380, 2668
Van91I CCANNNNNTGG 3 cut(s) 353, 1219, 2306
VpaK11BI GGWCC 4 cut(s) 650, 890, 1210, 2603
VspI ATTAAT 2 cut(s) 278, 2231
XapI RAATTY 5 cut(s) 818, 901, 1048, 1303, 2771
XceI RCATGY 1 cut(s) 871
XcmI CCANNNNNNNNNTGG 2 cut(s) 404, 2357
XhoI CTCGAG 1 cut(s) 1697
XmiI GTMKAC 1 cut(s) 1747
XmnI GAANNNNTTC 7 cut(s) 9, 66, 398, 1002, 1962, 2019, 2351
XspI CTAG 5 cut(s) 540, 776, 1283, 1602, 1862
Zsp2I ATGCAT 4 cut(s) 244, 934, 1826, 2197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.