Rroxscaffold_5G00352470

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000036
Physical Location & Seq
Reverse (-)
29497901 .. 29509979
12079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352470.1

Sequence Viewer

Length: 903 bp
ATGGAGAAGGAGCTAGATAACCAGTACGTGTGGTACTATGTTTCTCTCTGCATGTTTATTGATCTCATATACACATGCAATGGTGACAGTGGTCTTTATAGCAAAAGAGCTGTCATCATTATGGTTCATATGGAGCTCAGGACCATTGCTTTAAGCAAGATTGGGATTGTAGCAGGAGTTGAACATGTGAACTCAGTCCCAGGAGTCCAAAACCGGCAGCCCCACCCCAAGAACAGGCCGGAAACCTACCGAACCAGCCACCGGAAGCTCCATACAACCGGCAGCAAATATTCCACCGGATGGTGGATATGGTTGCCTTTGTCGATCCCGATCGACCGGTACACTTGGGTGTGGAAATCCAAGAACTTCTATTTTGGTATGAAGGAAATTCTGGAGGACAAGAACTTCGATTTTAGTATGAAGAAAGTTCCATATCCTTCAAAGTTGGGCTATTCGGACGACGAGCCTTACGAAACTTCGTTGTCCGAGTATCATGTGTTCTTGAGTTTCGGAGGCCAGGACACTCACAAAACTTTTACCGACCACCTCTATACGACCTTCAAGGACCAAGGCTTTCGCACCTTTCTAGATGACGATGAACTTGAGAGAGGAGAAGATATTAACCCGGGACTTGGGAATGCCGTCCGAGACTCGCGAAGTTCTGTCATTGTGTTCTCAAAAGATTACGCTTCTTCCCGGTGGTGCCTTAACGAGCTGGTGATGATCCTTGAACGCAAGAGGACCTCGGATCATGTTGTTTTACCAGTCTTCTACAACGTGGAACCATCCGACGTAAGGAAACAGACGGAAGTTTTGGGGAATTATTTGCTAGACACCAAAAGACTCAACCGCCACACAAGGTGCGGGAATGGAGGGATGCGCTTAAAAAAGTTGCGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

300

Amino Acids

35.07

Weight (kDa)

8.68

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 164 - 283 1.6e-36 TIR domain
TIR_2 PF13676 166 - 262 1.5e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 702
AccB7I CCANNNNNTGG 1 cut(s) 300
AccII CGCG 1 cut(s) 655
AciI CCGC 3 cut(s) 850, 864, 895
AclWI GGATC 3 cut(s) 319, 718, 756
AcsI RAATTY 1 cut(s) 387
AdeI CACNNNGTG 1 cut(s) 861
AfaI GTAC 3 cut(s) 26, 35, 341
AfiI CCNNNNNNNGG 6 cut(s) 234, 261, 300, 303, 632, 795
AflIII ACRYGT 2 cut(s) 27, 184
AgeI ACCGGT 1 cut(s) 336
AgsI TTSAA 4 cut(s) 182, 441, 562, 731
AjnI CCWGG 2 cut(s) 199, 516
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 5 cut(s) 13, 110, 136, 268, 715
AluI AGCT 5 cut(s) 13, 110, 136, 268, 715
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 3 cut(s) 319, 718, 756
Ama87I CYCGRG 1 cut(s) 625
AoxI GGCC 2 cut(s) 236, 514
ApeKI GCWGC 2 cut(s) 217, 282
ApoI RAATTY 1 cut(s) 387
ArsI GACNNNNNNTTYG 6 cut(s) 96, 128, 389, 421, 796, 828
AsiGI ACCGGT 1 cut(s) 336
AspLEI GCGC 1 cut(s) 882
AspS9I GGNCC 3 cut(s) 141, 565, 741
AsuC2I CCSGG 3 cut(s) 626, 627, 697
AsuHPI GGTGA 2 cut(s) 95, 730
AvaI CYCGRG 1 cut(s) 625
AvaII GGWCC 3 cut(s) 141, 565, 741
BanI GGYRCC 1 cut(s) 702
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 760
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 229, 294
BccI CCATC 2 cut(s) 294, 793
BceAI ACGGC 1 cut(s) 626
BciT130I CCWGG 2 cut(s) 201, 518
BcnI CCSGG 3 cut(s) 626, 627, 697
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 4 cut(s) 14, 587, 830, 901
BisI GCNGC 2 cut(s) 218, 283
BlsI GCNGC 2 cut(s) 219, 284
Bme1390I CCNGG 5 cut(s) 201, 518, 626, 627, 697
Bme18I GGWCC 3 cut(s) 141, 565, 741
BmeT110I CYCGRG 1 cut(s) 625
BmgT120I GGNCC 3 cut(s) 141, 565, 741
BmiI GGNNCC 2 cut(s) 704, 783
BmrFI CCNGG 5 cut(s) 201, 518, 626, 627, 697
BmsI GCATC 1 cut(s) 867
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 760
BpmI CTGGAG 1 cut(s) 413
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 523, 623
BpuMI CCSGG 3 cut(s) 626, 627, 697
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 199, 568, 625, 744
BsaWI WCCGGW 3 cut(s) 261, 296, 336
Bsc4I CCNNNNNNNGG 6 cut(s) 234, 261, 300, 303, 632, 795
Bse118I RCCGGY 3 cut(s) 213, 278, 336
Bse1I ACTGG 2 cut(s) 22, 764
Bse3DI GCAATG 2 cut(s) 85, 144
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 2 cut(s) 201, 518
BseDI CCNNGG 4 cut(s) 199, 568, 625, 744
BseGI GGATG 3 cut(s) 305, 785, 882
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 6 cut(s) 234, 261, 300, 303, 632, 795
BseMI GCAATG 2 cut(s) 85, 144
BseMII CTCAG 2 cut(s) 151, 207
BseNI ACTGG 2 cut(s) 22, 764
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 2 cut(s) 229, 294
Bsh1236I CGCG 1 cut(s) 655
Bsh1285I CGRYCG 2 cut(s) 333, 337
BshFI GGCC 2 cut(s) 238, 516
BshNI GGYRCC 1 cut(s) 702
BshTI ACCGGT 1 cut(s) 336
BsiEI CGRYCG 2 cut(s) 333, 337
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 625
BsiSI CCGG 8 cut(s) 214, 239, 262, 279, 297, 337, 626, 697
BslFI GGGAC 2 cut(s) 182, 642
BslI CCNNNNNNNGG 6 cut(s) 234, 261, 300, 303, 632, 795
BsmAI GTCTC 1 cut(s) 642
BsmFI GGGAC 2 cut(s) 182, 642
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 2 cut(s) 238, 516
BsoBI CYCGRG 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 6 cut(s) 61, 324, 330, 723, 748, 897
Bsp68I TCGCGA 1 cut(s) 655
BspACI CCGC 3 cut(s) 850, 864, 895
BspANI GGCC 2 cut(s) 238, 516
BspCNI CTCAG 2 cut(s) 150, 206
BspFNI CGCG 1 cut(s) 655
BspLI GGNNCC 2 cut(s) 704, 783
BspPI GGATC 3 cut(s) 319, 718, 756
BspT107I GGYRCC 1 cut(s) 702
BsrDI GCAATG 2 cut(s) 85, 144
BsrFI RCCGGY 3 cut(s) 213, 278, 336
BsrI ACTGG 2 cut(s) 22, 764
BssAI RCCGGY 3 cut(s) 213, 278, 336
BssECI CCNNGG 4 cut(s) 199, 568, 625, 744
BssMI GATC 6 cut(s) 61, 324, 330, 723, 748, 897
BssT1I CCWWGG 1 cut(s) 568
Bst2UI CCWGG 2 cut(s) 201, 518
Bst4CI ACNGT 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 137, 193
BstF5I GGATG 3 cut(s) 305, 785, 882
BstFNI CGCG 1 cut(s) 655
BstHHI GCGC 1 cut(s) 882
BstKTI GATC 6 cut(s) 64, 327, 333, 726, 751, 900
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 6 cut(s) 61, 324, 330, 723, 748, 897
BstMCI CGRYCG 2 cut(s) 333, 337
BstNI CCWGG 2 cut(s) 201, 518
BstNSI RCATGY 3 cut(s) 55, 78, 188
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 5 cut(s) 199, 516, 624, 625, 695
BstUI CGCG 1 cut(s) 655
BstV1I GCAGC 2 cut(s) 229, 294
BstV2I GAAGAC 1 cut(s) 760
BstX2I RGATCY 1 cut(s) 897
BstYI RGATCY 1 cut(s) 897
BsuRI GGCC 2 cut(s) 238, 516
BtsCI GGATG 3 cut(s) 305, 785, 882
BtsIMutI CAGTG 1 cut(s) 94
BtuMI TCGCGA 1 cut(s) 655
CfoI GCGC 1 cut(s) 882
Cfr10I RCCGGY 3 cut(s) 213, 278, 336
Cfr13I GGNCC 3 cut(s) 141, 565, 741
Cfr9I CCCGGG 1 cut(s) 625
Csp6I GTAC 3 cut(s) 25, 34, 340
CspAI ACCGGT 1 cut(s) 336
CviAII CATG 5 cut(s) 52, 75, 185, 494, 752
CviQI GTAC 3 cut(s) 25, 34, 340
DdeI CTNAG 2 cut(s) 137, 193
DpnI GATC 6 cut(s) 63, 326, 332, 725, 750, 899
DpnII GATC 6 cut(s) 61, 324, 330, 723, 748, 897
DraIII CACNNNGTG 1 cut(s) 861
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 3 cut(s) 141, 565, 741
Eco53kI GAGCTC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 625
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 741
EcoRII CCWGG 2 cut(s) 199, 516
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 5 cut(s) 55, 78, 188, 497, 755
FaqI GGGAC 2 cut(s) 182, 642
FatI CATG 5 cut(s) 51, 74, 184, 493, 751
FauI CCCGC 1 cut(s) 857
FauNDI CATATG 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 218, 283
FokI GGATG 3 cut(s) 312, 772, 889
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 218, 283
FspBI CTAG 4 cut(s) 14, 587, 830, 901
GlaI GCGC 1 cut(s) 881
GluI GCNGC 2 cut(s) 218, 283
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 2 cut(s) 238, 516
HapII CCGG 8 cut(s) 214, 239, 262, 279, 297, 337, 626, 697
HhaI GCGC 1 cut(s) 882
Hin1II CATG 5 cut(s) 55, 78, 188, 497, 755
Hin6I GCGC 1 cut(s) 880
HinP1I GCGC 1 cut(s) 880
HinfI GANTC 3 cut(s) 204, 650, 843
HpaII CCGG 8 cut(s) 214, 239, 262, 279, 297, 337, 626, 697
HphI GGTGA 2 cut(s) 95, 730
Hpy166II GTNNAC 2 cut(s) 190, 342
Hpy188I TCNGA 6 cut(s) 457, 487, 512, 647, 748, 790
Hpy188III TCNNGA 6 cut(s) 139, 328, 392, 502, 587, 654
Hpy8I GTNNAC 2 cut(s) 190, 342
Hpy99I CGWCG 2 cut(s) 464, 794
HpyAV CCTTC 3 cut(s) 376, 447, 568
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 3 cut(s) 27, 777, 792
HpyCH4V TGCA 2 cut(s) 51, 78
HpyF3I CTNAG 2 cut(s) 137, 193
HpySE526I ACGT 3 cut(s) 27, 777, 792
Hsp92II CATG 5 cut(s) 55, 78, 188, 497, 755
HspAI GCGC 1 cut(s) 880
Kzo9I GATC 6 cut(s) 61, 324, 330, 723, 748, 897
LmnI GCTCC 3 cut(s) 10, 133, 273
Lsp1109I GCAGC 2 cut(s) 229, 294
LweI GCATC 1 cut(s) 867
MaeI CTAG 4 cut(s) 14, 587, 830, 901
MaeII ACGT 3 cut(s) 27, 777, 792
MaeIII GTNAC 1 cut(s) 83
MalI GATC 6 cut(s) 63, 326, 332, 725, 750, 899
MboI GATC 6 cut(s) 61, 324, 330, 723, 748, 897
MboII GAAGA 4 cut(s) 433, 626, 684, 760
MflI RGATCY 1 cut(s) 897
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 2 cut(s) 387, 820
MlyI GAGTC 3 cut(s) 213, 644, 837
MmeI TCCRAC 1 cut(s) 813
MnlI CCTC 7 cut(s) 388, 506, 557, 602, 732, 754, 866
MseI TTAA 4 cut(s) 152, 621, 708, 884
MslI CAYNNNNRTG 2 cut(s) 119, 347
MspI CCGG 8 cut(s) 214, 239, 262, 279, 297, 337, 626, 697
MspR9I CCNGG 5 cut(s) 201, 518, 626, 627, 697
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 2 cut(s) 201, 518
MvnI CGCG 1 cut(s) 655
NciI CCSGG 3 cut(s) 626, 627, 697
NdeI CATATG 1 cut(s) 129
NdeII GATC 6 cut(s) 61, 324, 330, 723, 748, 897
NlaIII CATG 5 cut(s) 55, 78, 188, 497, 755
NlaIV GGNNCC 2 cut(s) 704, 783
NmuCI GTSAC 1 cut(s) 83
NruI TCGCGA 1 cut(s) 655
NspI RCATGY 3 cut(s) 55, 78, 188
OliI CACNNNNGTG 1 cut(s) 347
PciI ACATGT 1 cut(s) 184
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PctI GAATGC 1 cut(s) 643
PflMI CCANNNNNTGG 1 cut(s) 300
PinAI ACCGGT 1 cut(s) 336
PkrI GCNGC 2 cut(s) 219, 284
Ple19I CGATCG 1 cut(s) 333
PleI GAGTC 3 cut(s) 212, 644, 837
PpsI GAGTC 3 cut(s) 212, 644, 837
Ppu21I YACGTR 1 cut(s) 28
PpuMI RGGWCCY 1 cut(s) 741
PscI ACATGT 1 cut(s) 184
PshAI GACNNNNGTC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 741
Psp6I CCWGG 2 cut(s) 199, 516
PspGI CCWGG 2 cut(s) 199, 516
PspN4I GGNNCC 2 cut(s) 704, 783
PspPI GGNCC 3 cut(s) 141, 565, 741
PspPPI RGGWCCY 1 cut(s) 741
PsrI GAACNNNNNNTAC 2 cut(s) 482, 514
PsuI RGATCY 1 cut(s) 897
PvuI CGATCG 1 cut(s) 333
RruI TCGCGA 1 cut(s) 655
RsaI GTAC 3 cut(s) 26, 35, 341
RsaNI GTAC 3 cut(s) 25, 34, 340
RseI CAYNNNNRTG 2 cut(s) 119, 347
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 4 cut(s) 152, 621, 708, 884
SatI GCNGC 2 cut(s) 218, 283
Sau3AI GATC 6 cut(s) 61, 324, 330, 723, 748, 897
Sau96I GGNCC 3 cut(s) 141, 565, 741
SchI GAGTC 3 cut(s) 213, 644, 837
ScrFI CCNGG 5 cut(s) 201, 518, 626, 627, 697
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 1 cut(s) 867
SinI GGWCC 3 cut(s) 141, 565, 741
SmaI CCCGGG 1 cut(s) 627
SmiMI CAYNNNNRTG 2 cut(s) 119, 347
SmlI CTYRAG 2 cut(s) 502, 602
SmoI CTYRAG 2 cut(s) 502, 602
Sse9I AATT 2 cut(s) 387, 820
SsiI CCGC 3 cut(s) 850, 864, 895
SspI AATATT 1 cut(s) 290
SspMI CTAG 4 cut(s) 14, 587, 830, 901
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 5 cut(s) 199, 516, 624, 625, 695
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 3 cut(s) 30, 780, 795
TaqI TCGA 3 cut(s) 323, 333, 408
TasI AATT 2 cut(s) 387, 820
Tru1I TTAA 4 cut(s) 152, 621, 708, 884
Tru9I TTAA 4 cut(s) 152, 621, 708, 884
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 217, 282
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 4 cut(s) 116, 395, 434, 612
TspGWI ACGGA 1 cut(s) 821
TspMI CCCGGG 1 cut(s) 625
TspRI CASTG 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 3 cut(s) 141, 565, 741
XapI RAATTY 1 cut(s) 387
XbaI TCTAGA 1 cut(s) 586
XceI RCATGY 3 cut(s) 55, 78, 188
XmaI CCCGGG 1 cut(s) 625
XspI CTAG 4 cut(s) 14, 587, 830, 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.