Rmu_sc0002705.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002705.1
OG0000036
Physical Location & Seq
Forward (+)
42190 .. 47403
5214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002705.1_g000015.1.cds

Sequence Viewer

Length: 2058 bp
atgcagtccagcaaagttgagtatcaagcggttcgcgaagattgcattcgaagcggtgaagagatggtgcattctgacactcctcaccagatcaacccggcgaccgtacttccagtctcagtctccccaggagccgactgcgagcacaaccgccactgttacttccagcgaagcaaggtcctagtctcctcgcgagccgactgtcagcctcaccagatcaacccgacgaccgtacttccagtcccagtctccccaggagccgactgcgagcataaccgccactgttacttccagcaaagcaaggcgcttgaagaagaagtcaggtcacgggactaccccaacgactgtaccccgcgtgagggagtagctaagattgaactcgccataagctcgaaaagggttcttattgttcttgatgatgtggatcatatggaccaactacatgcagtatttatgaggaaaaatcagttttatccaggaagcaagatcatcataacaactaggcgttcgagattatccaaggatcctcaagttactaaagttcataatgttgaaactttggattacgttgaatcattggagctattcagttggcatgcttttggacagaaccatcccactgacggttacattgaactctcaaaaaaggtagtaagccacagtggaggactcccattagcacttcgagttttgggttcttctctagtgggggagagcaaagctgtctgggaaagtgcattgcagaaattagaaagtatttcacatagtgaaatcatgaataaacttcgaataagctacgactctttacaagatgaccatgaccaaaaattattcctccacattgcatgtttctttgttggaaagaaccaagcttacattggtagggtattggatggatgtgaattccaaacagctattggcgttcaaaatctcgttgatagatgtttagtgacaattgatgtgtatgaaaatgtagaaatgcatgaaatgcttcgtgaaatgggaagaggaattgttcgcttagagtcgcccgaggagcctgggagacgtagtagattatggcgtcataaggattcgttgacagtactaaaagaaaagagtggtacagaaacagtcgaagctctactcctcaatatgagtatgcgcgcaaatgctctaatcgacttgaatgacagagtctttgaaactgctgcatttgcaagaatgcacaaactaagactactctggcttagtcatgtacaactcaatggatcttatagggaatttcctacaggattaagatggttgtgttgggtagcatttcctttggattctataccaaatgattttactttggagaaccttgtctttcttgaaatgcaaattcgaggcttgaacgtcttcgttgtctatgcaaattctgaaaatggtcctcctagcgtgtttgatgatcatttacctactgcactaattactaaagttagaaacaagagcaagggtcggacctggatctacggcccgcgatcctatggaattccaggtgcaggagaggacatgatatggttaagccattggagttttctggagaaccaattcaaaggtggcgatcaagtatatgtttcagtatccataggacctcagcgtcatgtaaaggagtggggcatcaagcttgtactggaggagcaacaacgacacatgacaagtagtagtagtaccagtgcggatccttgtgatgcagatatgtcaagacgtgaggtcttgccggggatatacttgttctgctactgggtaccagctggaagaatggaagatattgccttacgtaggccaacttggtttattgacctgattggagatccctatgaagatacaggaggtgacaatgaagacgagcaacaagatgaacatcacacacttgtaccagcaacgagtagtgatggcgacaaccaccgggatctcagaaagtggaaggtgctcattttagccgctgtgtttttaattctctccttgtccatgcgcgcactcctctctttctcatccagacagacatgcatggagtctgcttcggttcctacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

685

Amino Acids

77.82

Weight (kDa)

5.94

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1620
Acc65I GGTACC 1 cut(s) 1768
AccB1I GGYRCC 1 cut(s) 1768
AccII CGCG 6 cut(s) 36, 193, 355, 1146, 1501, 1998
AciI CCGC 8 cut(s) 29, 54, 151, 277, 353, 1499, 1700, 1965
AcsI RAATTY 5 cut(s) 902, 1262, 1362, 1396, 1512
AcyI GRCGYC 1 cut(s) 1063
AdeI CACNNNGTG 1 cut(s) 767
AfiI CCNNNNNNNGG 5 cut(s) 358, 359, 623, 1523, 1803
AhdI GACNNNNNGTC 1 cut(s) 1733
AjiI CACGTC 1 cut(s) 1730
AjnI CCWGG 6 cut(s) 127, 253, 475, 1039, 1484, 1516
Alw21I GWGCWC 2 cut(s) 147, 1956
Alw26I GTCTC 5 cut(s) 121, 127, 190, 253, 1039
Ama87I CYCGRG 1 cut(s) 1031
AoxI GGCC 2 cut(s) 1495, 1805
ApeKI GCWGC 1 cut(s) 1190
ApoI RAATTY 5 cut(s) 902, 1262, 1362, 1396, 1512
ArsI GACNNNNNNTTYG 2 cut(s) 1163, 1195
Asp700I GAANNNNTTC 3 cut(s) 990, 1379, 1571
Asp718I GGTACC 1 cut(s) 1768
AspLEI GCGC 5 cut(s) 307, 1146, 1148, 1998, 2000
AspS9I GGNCC 6 cut(s) 178, 433, 1409, 1482, 1496, 1613
AsuC2I CCSGG 3 cut(s) 98, 1743, 1931
AsuHPI GGTGA 4 cut(s) 68, 77, 203, 1868
AsuII TTCGAA 2 cut(s) 49, 787
AvaI CYCGRG 1 cut(s) 1031
AvaII GGWCC 5 cut(s) 178, 433, 1409, 1482, 1613
BaeI ACNNNNGTAYC 4 cut(s) 331, 364, 1881, 1914
BamHI GGATCC 2 cut(s) 523, 1702
BanI GGYRCC 1 cut(s) 1768
BbsI GAAGAC 2 cut(s) 1372, 1872
Bbv12I GWGCWC 2 cut(s) 147, 1956
BbvCI CCTCAGC 1 cut(s) 1617
BbvI GCAGC 1 cut(s) 1177
BccI CCATC 5 cut(s) 58, 621, 887, 1275, 1910
BceAI ACGGC 1 cut(s) 1510
BciT130I CCWGG 6 cut(s) 129, 255, 477, 1041, 1486, 1518
BciVI GTATCC 1 cut(s) 1615
BclI TGATCA 1 cut(s) 1429
BcnI CCSGG 3 cut(s) 98, 1743, 1931
BcoDI GTCTC 5 cut(s) 121, 127, 190, 253, 1039
BfaI CTAG 4 cut(s) 182, 501, 704, 1416
BfmI CTRYAG 1 cut(s) 1269
BfoI RGCGCY 1 cut(s) 308
BfuI GTATCC 1 cut(s) 1615
BisI GCNGC 2 cut(s) 1191, 1965
BlsI GCNGC 2 cut(s) 1192, 1966
BmcAI AGTACT 1 cut(s) 1086
Bme1390I CCNGG 9 cut(s) 98, 129, 255, 477, 1041, 1486, 1518, 1743, 1931
Bme18I GGWCC 5 cut(s) 178, 433, 1409, 1482, 1613
BmeRI GACNNNNNGTC 1 cut(s) 1733
BmeT110I CYCGRG 1 cut(s) 1031
BmgBI CACGTC 1 cut(s) 1730
BmgT120I GGNCC 6 cut(s) 178, 433, 1409, 1482, 1496, 1613
BmiI GGNNCC 7 cut(s) 133, 259, 525, 1038, 1704, 1770, 2049
BmrFI CCNGG 9 cut(s) 98, 129, 255, 477, 1041, 1486, 1518, 1743, 1931
BmrI ACTGGG 2 cut(s) 239, 1774
BmsI GCATC 2 cut(s) 1650, 1702
BmuI ACTGGG 2 cut(s) 239, 1774
BpiI GAAGAC 2 cut(s) 1372, 1872
BpmI CTGGAG 2 cut(s) 1583, 1676
Bpu10I CCTNAGC 1 cut(s) 1617
Bpu14I TTCGAA 2 cut(s) 49, 787
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 3 cut(s) 98, 1743, 1931
BsaAI YACGTR 1 cut(s) 1802
BsaBI GATNNNNATC 2 cut(s) 423, 1884
BsaHI GRCGYC 1 cut(s) 1063
BsaJI CCNNGG 6 cut(s) 127, 253, 519, 1032, 1040, 1742
BsaXI ACNNNNNCTCC 2 cut(s) 1036, 1066
Bsc4I CCNNNNNNNGG 5 cut(s) 358, 359, 623, 1523, 1803
Bse1I ACTGG 6 cut(s) 113, 239, 245, 1659, 1695, 1769
Bse3DI GCAATG 2 cut(s) 737, 840
Bse8I GATNNNNATC 2 cut(s) 423, 1884
BseBI CCWGG 6 cut(s) 129, 255, 477, 1041, 1486, 1518
BseDI CCNNGG 6 cut(s) 127, 253, 519, 1032, 1040, 1742
BseGI GGATG 4 cut(s) 613, 898, 902, 2015
BseJI GATNNNNATC 2 cut(s) 423, 1884
BseLI CCNNNNNNNGG 5 cut(s) 358, 359, 623, 1523, 1803
BseMI GCAATG 2 cut(s) 737, 840
BseMII CTCAG 3 cut(s) 132, 1631, 1951
BseNI ACTGG 6 cut(s) 113, 239, 245, 1659, 1695, 1769
BsePI GCGCGC 2 cut(s) 1144, 1996
BseRI GAGGAG 6 cut(s) 72, 178, 1049, 1118, 1673, 1994
BseXI GCAGC 1 cut(s) 1177
BsgI GTGCAG 2 cut(s) 1428, 1542
Bsh1236I CGCG 6 cut(s) 36, 193, 355, 1146, 1501, 1998
Bsh1285I CGRYCG 2 cut(s) 105, 231
BshFI GGCC 2 cut(s) 1497, 1807
BshNI GGYRCC 1 cut(s) 1768
BsiEI CGRYCG 2 cut(s) 105, 231
BsiHKAI GWGCWC 2 cut(s) 147, 1956
BsiHKCI CYCGRG 1 cut(s) 1031
BsiSI CCGG 3 cut(s) 98, 1742, 1930
BslFI GGGAC 2 cut(s) 227, 344
BslI CCNNNNNNNGG 5 cut(s) 358, 359, 623, 1523, 1803
BsmAI GTCTC 5 cut(s) 121, 127, 190, 253, 1039
BsmBI CGTCTC 1 cut(s) 1039
BsmFI GGGAC 2 cut(s) 227, 344
BsmI GAATGC 3 cut(s) 45, 70, 1209
BsnI GGCC 2 cut(s) 1497, 1807
BsoBI CYCGRG 1 cut(s) 1031
Bsp119I TTCGAA 2 cut(s) 49, 787
Bsp1286I GDGCHC 2 cut(s) 147, 1956
Bsp1407I TGTACA 1 cut(s) 1237
Bsp68I TCGCGA 2 cut(s) 36, 193
BspACI CCGC 8 cut(s) 29, 54, 151, 277, 353, 1499, 1700, 1965
BspANI GGCC 2 cut(s) 1497, 1807
BspCNI CTCAG 3 cut(s) 131, 1630, 1950
BspFNI CGCG 6 cut(s) 36, 193, 355, 1146, 1501, 1998
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 7 cut(s) 133, 259, 525, 1038, 1704, 1770, 2049
BspT104I TTCGAA 2 cut(s) 49, 787
BspT107I GGYRCC 1 cut(s) 1768
BsrDI GCAATG 2 cut(s) 737, 840
BsrGI TGTACA 1 cut(s) 1237
BsrI ACTGG 6 cut(s) 113, 239, 245, 1659, 1695, 1769
BssECI CCNNGG 6 cut(s) 127, 253, 519, 1032, 1040, 1742
BssHII GCGCGC 2 cut(s) 1144, 1996
BssNI GRCGYC 1 cut(s) 1063
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 6 cut(s) 129, 255, 477, 1041, 1486, 1518
Bst6I CTCTTC 2 cut(s) 54, 1000
BstACI GRCGYC 1 cut(s) 1063
BstAPI GCANNNNNTGC 1 cut(s) 988
BstAUI TGTACA 1 cut(s) 1237
BstBAI YACGTR 1 cut(s) 1802
BstBI TTCGAA 2 cut(s) 49, 787
BstC8I GCNNGC 7 cut(s) 143, 195, 269, 597, 1146, 1499, 1998
BstDEI CTNAG 7 cut(s) 118, 369, 1021, 1214, 1229, 1617, 1937
BstENI CCTNNNNNAGG 1 cut(s) 1801
BstF5I GGATG 4 cut(s) 613, 898, 902, 2015
BstFNI CGCG 6 cut(s) 36, 193, 355, 1146, 1501, 1998
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 5 cut(s) 307, 1146, 1148, 1998, 2000
BstMAI GTCTC 5 cut(s) 121, 127, 190, 253, 1039
BstMCI CGRYCG 2 cut(s) 105, 231
BstMWI GCNNNNNNNGC 5 cut(s) 42, 51, 988, 1036, 1196
BstNI CCWGG 6 cut(s) 129, 255, 477, 1041, 1486, 1518
BstNSI RCATGY 4 cut(s) 446, 599, 849, 2031
BstSCI CCNGG 9 cut(s) 96, 127, 253, 475, 1039, 1484, 1516, 1741, 1929
BstSFI CTRYAG 1 cut(s) 1269
BstSNI TACGTA 1 cut(s) 1802
BstUI CGCG 6 cut(s) 36, 193, 355, 1146, 1501, 1998
BstV1I GCAGC 1 cut(s) 1177
BstV2I GAAGAC 2 cut(s) 1372, 1872
BstX2I RGATCY 6 cut(s) 523, 1250, 1488, 1702, 1834, 1933
BstYI RGATCY 6 cut(s) 523, 1250, 1488, 1702, 1834, 1933
BsuI GTATCC 1 cut(s) 1615
BsuRI GGCC 2 cut(s) 1497, 1807
BtrI CACGTC 1 cut(s) 1730
BtsCI GGATG 4 cut(s) 613, 898, 902, 2015
BtsIMutI CAGTG 5 cut(s) 154, 280, 618, 667, 1702
BtuMI TCGCGA 2 cut(s) 36, 193
Cac8I GCNNGC 7 cut(s) 143, 195, 269, 597, 1146, 1499, 1998
CciI TCATGA 1 cut(s) 774
CfoI GCGC 5 cut(s) 307, 1146, 1148, 1998, 2000
Cfr13I GGNCC 6 cut(s) 178, 433, 1409, 1482, 1496, 1613
CseI GACGC 2 cut(s) 1052, 1610
DdeI CTNAG 7 cut(s) 118, 369, 1021, 1214, 1229, 1617, 1937
DraIII CACNNNGTG 1 cut(s) 767
DrdI GACNNNNNNGTC 1 cut(s) 1620
DriI GACNNNNNGTC 1 cut(s) 1733
DseDI GACNNNNNNGTC 1 cut(s) 1620
Eam1104I CTCTTC 2 cut(s) 54, 1000
Eam1105I GACNNNNNGTC 1 cut(s) 1733
EarI CTCTTC 2 cut(s) 54, 1000
Eco105I TACGTA 1 cut(s) 1802
Eco130I CCWWGG 1 cut(s) 519
Eco47I GGWCC 5 cut(s) 178, 433, 1409, 1482, 1613
Eco88I CYCGRG 1 cut(s) 1031
EcoNI CCTNNNNNAGG 1 cut(s) 1801
EcoO109I RGGNCCY 2 cut(s) 178, 1613
EcoRI GAATTC 2 cut(s) 902, 1512
EcoRII CCWGG 6 cut(s) 127, 253, 475, 1039, 1484, 1516
EcoT14I CCWWGG 1 cut(s) 519
EcoT22I ATGCAT 2 cut(s) 984, 2033
ErhI CCWWGG 1 cut(s) 519
Esp3I CGTCTC 1 cut(s) 1039
FaqI GGGAC 2 cut(s) 227, 344
FauI CCCGC 2 cut(s) 360, 1506
FauNDI CATATG 1 cut(s) 429
FbaI TGATCA 1 cut(s) 1429
Fnu4HI GCNGC 2 cut(s) 1191, 1965
FokI GGATG 4 cut(s) 600, 905, 909, 2002
Fsp4HI GCNGC 2 cut(s) 1191, 1965
FspBI CTAG 4 cut(s) 182, 501, 704, 1416
GlaI GCGC 5 cut(s) 306, 1145, 1147, 1997, 1999
GluI GCNGC 2 cut(s) 1191, 1965
GsuI CTGGAG 2 cut(s) 1583, 1676
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 2 cut(s) 1497, 1807
HapII CCGG 3 cut(s) 98, 1742, 1930
HgaI GACGC 2 cut(s) 1052, 1610
HhaI GCGC 5 cut(s) 307, 1146, 1148, 1998, 2000
Hin1I GRCGYC 1 cut(s) 1063
Hin6I GCGC 5 cut(s) 305, 1144, 1146, 1996, 1998
HinP1I GCGC 5 cut(s) 305, 1144, 1146, 1996, 1998
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HindIII AAGCTT 2 cut(s) 870, 1646
HinfI GANTC 8 cut(s) 572, 669, 800, 1025, 1073, 1176, 1310, 2036
HpaII CCGG 3 cut(s) 98, 1742, 1930
HphI GGTGA 4 cut(s) 68, 77, 203, 1868
Hpy166II GTNNAC 1 cut(s) 1080
Hpy188I TCNGA 4 cut(s) 76, 1402, 1482, 1940
Hpy8I GTNNAC 1 cut(s) 1080
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 1942
HpyCH4IV ACGT 5 cut(s) 567, 1048, 1377, 1729, 1801
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 51, 988, 1036, 1196
HpyF3I CTNAG 7 cut(s) 118, 369, 1021, 1214, 1229, 1617, 1937
HpySE526I ACGT 5 cut(s) 567, 1048, 1377, 1729, 1801
Hsp92I GRCGYC 1 cut(s) 1063
HspAI GCGC 5 cut(s) 305, 1144, 1146, 1996, 1998
KpnI GGTACC 1 cut(s) 1772
Ksp22I TGATCA 1 cut(s) 1429
LmnI GCTCC 5 cut(s) 131, 257, 580, 1036, 1660
Lsp1109I GCAGC 1 cut(s) 1177
LweI GCATC 2 cut(s) 1650, 1702
MaeI CTAG 4 cut(s) 182, 501, 704, 1416
MaeII ACGT 5 cut(s) 567, 1048, 1377, 1729, 1801
MaeIII GTNAC 7 cut(s) 158, 284, 324, 532, 626, 949, 1856
MfeI CAATTG 1 cut(s) 954
MflI RGATCY 6 cut(s) 523, 1250, 1488, 1702, 1834, 1933
MhlI GDGCHC 2 cut(s) 147, 1956
MlyI GAGTC 5 cut(s) 663, 794, 1034, 1185, 2045
MmeI TCCRAC 2 cut(s) 838, 1460
Mph1103I ATGCAT 2 cut(s) 984, 2033
MroXI GAANNNNTTC 3 cut(s) 990, 1379, 1571
MseI TTAA 3 cut(s) 1277, 1544, 1976
MspA1I CMGCKG 2 cut(s) 1775, 1967
MspI CCGG 3 cut(s) 98, 1742, 1930
MspR9I CCNGG 9 cut(s) 98, 129, 255, 477, 1041, 1486, 1518, 1743, 1931
MunI CAATTG 1 cut(s) 954
Mva1269I GAATGC 3 cut(s) 45, 70, 1209
MvaI CCWGG 6 cut(s) 129, 255, 477, 1041, 1486, 1518
MvnI CGCG 6 cut(s) 36, 193, 355, 1146, 1501, 1998
MwoI GCNNNNNNNGC 5 cut(s) 42, 51, 988, 1036, 1196
NciI CCSGG 3 cut(s) 98, 1743, 1931
NdeI CATATG 1 cut(s) 429
NlaIV GGNNCC 7 cut(s) 133, 259, 525, 1038, 1704, 1770, 2049
NmuCI GTSAC 3 cut(s) 324, 949, 1856
NruI TCGCGA 2 cut(s) 36, 193
NsiI ATGCAT 2 cut(s) 984, 2033
NspI RCATGY 4 cut(s) 446, 599, 849, 2031
NspV TTCGAA 2 cut(s) 49, 787
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 1 cut(s) 774
PauI GCGCGC 2 cut(s) 1144, 1996
PctI GAATGC 3 cut(s) 45, 70, 1209
PdmI GAANNNNTTC 3 cut(s) 990, 1379, 1571
PfeI GAWTC 3 cut(s) 572, 1073, 1310
PflFI GACNNNGTC 1 cut(s) 1175
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 2 cut(s) 1192, 1966
PleI GAGTC 5 cut(s) 663, 794, 1033, 1184, 2044
PpsI GAGTC 5 cut(s) 663, 794, 1033, 1184, 2044
Ppu21I YACGTR 1 cut(s) 1802
PpuMI RGGWCCY 2 cut(s) 178, 1613
Psp5II RGGWCCY 2 cut(s) 178, 1613
Psp6I CCWGG 6 cut(s) 127, 253, 475, 1039, 1484, 1516
PspGI CCWGG 6 cut(s) 127, 253, 475, 1039, 1484, 1516
PspN4I GGNNCC 7 cut(s) 133, 259, 525, 1038, 1704, 1770, 2049
PspPI GGNCC 6 cut(s) 178, 433, 1409, 1482, 1496, 1613
PspPPI RGGWCCY 2 cut(s) 178, 1613
PsrI GAACNNNNNNTAC 2 cut(s) 857, 889
PsuI RGATCY 6 cut(s) 523, 1250, 1488, 1702, 1834, 1933
PsyI GACNNNGTC 1 cut(s) 1175
PteI GCGCGC 2 cut(s) 1144, 1996
PvuII CAGCTG 1 cut(s) 1775
RruI TCGCGA 2 cut(s) 36, 193
SaqAI TTAA 3 cut(s) 1277, 1544, 1976
SatI GCNGC 2 cut(s) 1191, 1965
Sau96I GGNCC 6 cut(s) 178, 433, 1409, 1482, 1496, 1613
ScaI AGTACT 1 cut(s) 1086
SchI GAGTC 5 cut(s) 663, 794, 1034, 1185, 2045
ScrFI CCNGG 9 cut(s) 98, 129, 255, 477, 1041, 1486, 1518, 1743, 1931
SduI GDGCHC 2 cut(s) 147, 1956
SfaNI GCATC 2 cut(s) 1650, 1702
SfcI CTRYAG 1 cut(s) 1269
SfuI TTCGAA 2 cut(s) 49, 787
SinI GGWCC 5 cut(s) 178, 433, 1409, 1482, 1613
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
SnaBI TACGTA 1 cut(s) 1802
SphI GCATGC 1 cut(s) 599
SsiI CCGC 8 cut(s) 29, 54, 151, 277, 353, 1499, 1700, 1965
SspMI CTAG 4 cut(s) 182, 501, 704, 1416
StyD4I CCNGG 9 cut(s) 96, 127, 253, 475, 1039, 1484, 1516, 1741, 1929
StyI CCWWGG 1 cut(s) 519
TaiI ACGT 5 cut(s) 570, 1051, 1380, 1732, 1804
TaqI TCGA 8 cut(s) 49, 392, 509, 685, 787, 1116, 1161, 1366
TatI WGTACW 3 cut(s) 1084, 1237, 1651
TauI GCSGC 1 cut(s) 1967
TfiI GAWTC 3 cut(s) 572, 1073, 1310
Tru1I TTAA 3 cut(s) 1277, 1544, 1976
Tru9I TTAA 3 cut(s) 1277, 1544, 1976
TscAI CASTG 5 cut(s) 161, 287, 625, 667, 1702
TseFI GTSAC 3 cut(s) 324, 949, 1856
TseI GCWGC 1 cut(s) 1190
Tsp45I GTSAC 3 cut(s) 324, 949, 1856
TspDTI ATGAA 7 cut(s) 533, 791, 981, 999, 1857, 1878, 1896
TspRI CASTG 5 cut(s) 161, 287, 625, 667, 1702
Tth111I GACNNNGTC 1 cut(s) 1175
VpaK11BI GGWCC 5 cut(s) 178, 433, 1409, 1482, 1613
XagI CCTNNNNNAGG 1 cut(s) 1801
XapI RAATTY 5 cut(s) 902, 1262, 1362, 1396, 1512
XceI RCATGY 4 cut(s) 446, 599, 849, 2031
XcmI CCANNNNNNNNNTGG 3 cut(s) 875, 914, 1577
XmnI GAANNNNTTC 3 cut(s) 990, 1379, 1571
XspI CTAG 4 cut(s) 182, 501, 704, 1416
ZrmI AGTACT 1 cut(s) 1086
Zsp2I ATGCAT 2 cut(s) 984, 2033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.