Rh1CG187300

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000036
Physical Location & Seq
Forward (+)
40903187 .. 40915356
12170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG187300.1

Sequence Viewer

Length: 3129 bp
ATGTCTGGAATAGGGAAGACAACAGTTGCAAAACATGTCTATAATGCAAACTTCAGAAGATTCGAAGGAAGTAGTTTCATCGAAAATATTAGAGAAACCTCAGAACAAACCAATGGCCTAGTTAAAATACAAAAACAACTCCTTAATGATATTTTGAATGGAAGAGAAGTGAAACTACGAAATGCTAGCGAGGGGAAAATTAAGATTGAGGATGCCATAAGCTGTAAAAGAGTTCTTCTTGTTCTTGATGACGTGGATCATATGGACCAATTTGATGCAGTACTTGCGATGCAAGATCGATTTTATCCAGGAAGTAAAATCATCATAACAACTAGCCGTGCAACGCTACTAAAGGCTCAGGGAGTTAGTGGGGTGCATTATGTTCAAGCTTTGGATGATAGTGAATCATTGAAGCTCTTTAGTTGGCATGCTTTTCGACAAGATCATCCTATTGAAGGTCACATGGAACATACTAAAAAGTTTGTACGCCACAGCGGGGGGCTTCCATTAGCTCTTCAAGTTTTGGGTTCTTCTCTATTCAGAGAAAATATAGATGTTTGGGAAAGTGCATTAAGAAAGTTGGAAGCAATTCCGAACAGTGAAATCATGCATAAACTCAGAATTAGTTACGATGCAGTAGATAAACATGATCAGGAAGTGTTCCTCCACATTGCTTGTTTCTTTATTGGAAATGATAAAGATTACACTGTTGGAATACTAGATGAATGTGACTTGCACACAACTATTGGCATTATAAATCTCATTGATAGATGCTTAGTAGCAATTGACGGCAATAACAAGGTAGTGATGCATGACGTGGTTCGTGATATGGGAAGAGGAATTGTTCGCTTAGCAGCAGAGGAGCCCCGGAAACGTAGTAGATTATGGCATCACAAGGACTCTATGAGAGTATTGAGAGAAAAGAATGGTACCAAAAGAATTGAAGGTTTTGAATTAAACTTGCGAAGGCACCTTGGAGTCACTACCCCTTCAACTATCCCGAACAATTTTGTCGTCGAAACCAGTGCATTTGCAAGGATGCACAAACTAAAACTGCTCCGGCTCAGTCATGTACATCTCACTGGATGCTATGAAGAATTTCCTACAGAATTGAGAATGTTGTGTTGGATTGCATTTCCTTTGGATTCTATACCTATTAATTTTCATTTGGAGAACCTAGTTGTTCTGGAAATGCAGTATAGCAGCTTGAGACAAATCTTGAATGGAACAAAGTGTTTTCCATCCATGAAGATCCTTGATCTCAGCCATTCTCATGACCTTATTGCAGCCGTTGACTTCTCTCTATGTCTGAATCTAGAGAAACTGATACTTATAGAGTGTGAAGGCTTGATTGATGTCCATGAATCCATTGGAAAGCTAGGCAGACTTGTTTATTTGAATATGAAAGATTGCAGAAGTCTTAGGAGACTCCCAAAGACCATTGGTACGCTAAAGCGACTTGACACACTTATTCTATCTGGTTGTTTAAATCTTAACAACTCTTCAATTGAGATGATTAGGGGCATGGAGTCTCTGAAAGTGCTTGAATTGGATAGAATTCCAATAAGTCAATTATTCACTCTCTGTGGGGAGGTCAAATTAGAGAGTTACTTACCATTCTCTTTACTATCTTTAAGTCTCAAGGGGTGCAATCTTTCTGATGATTCTTTTCCTGTGGATTTTGGTAGCCTATCCTTACTGAGAAGTTTAGATCTAAGTGATAATCCAATTTGTGGCCTACCAAATTGCGTCAAGGGACTGACAATGCTAGATAAACTCTCTTTTTCCAACTGTTTGAGCCTCAAATCCCTTTTAGGGCTACCAAAAGTAAATTTTATGTTGAGTTTGGGTGATTGCAAAGCATTGGTAAAAATAACATATCAGTCAAGGTTTGGCACACCATACCAATGGGATAAGAACCACAGCCTAGTTGACTGGGAATACAAATATAAGTTAGAACCCATTGGAAGAGTTGATGTAGAAATGCTTAACCTTTTGGGCTTGAGAAACTTGGACTTCGAAATCATGCCAACCATTCGGATATGTAAACCATTTCAAGGTTATGAAATATTTCATCATGGTGGAATCCAGGGACTGCATGAGTATGATTGTACAAACTCTCACTTCAAAGGAAATGCAAGAAAGATAGATATGTTCAGCACATTTCTTCCTGGGAATGTGGTTCCAGGCCATTTCACCCATAAAAGTAAAGAACCCTCCTCAATATCATTTATAGTGCCTTTGCCTTCACTTCCCGGTCTTAGAATTCGAGGCTTTAACATCTTCATTGTCTATGCAATTTCTGATGATGTCGATGACAAAAATTATTACTGGCCTAGTAATGAACGTGACAAGGGTGCAGTATCTATTAAAGTCGAAAATGAGAGCAACGATGACAACTGGGATTATAGTCCAGTATTCCATGCTATTCCAGGGAAGGGAGAAGACATGACATGGTTAAGCCATTGGAATATGAAAAATCAAGTCAAAGGTGGGGATCAAATGGCTGTTTCATTCCGGGTACAATTTAGTACATTTTTGTTTCTGGTAAAAGAGTGGGGAATCCAGGTTGTACAGGAGAAGCAAGAGGATAAGACGTATACCGACCTCAACAGTACCACCAATGCTAATTGTAATCCGTGTGCCACTGGCGGAGATATGTCAAGCTCTGATGAGCCATTGCCAGGACCATACTTGCTCTCCTATGAACCTCATACAGTGGAAGCAGATAATTGTAATCCCTGTGGCACTGATGGAGATATGTCAAGCTCTGATGAACCATTGCCAGGACCATACTTGCTCTCCTATGAACCTCATACAGTGGAAGCAGATAAAGATAAAAAAGGAGATGAAGAAGAGGCAGAGGGTGATCTTTTTCCTGCATCAGCAATGAGGACTGGCAGCAACAGCCGCGAGCGGGGTTTCAGAAAGTGGAAGGTGCTTATCATTACCGCTGTCATCCTTGCTGCTGCCATCAGTGCCGCTCATCATTTTGAGGACCCTGATCTCGACACAAATCTATCTAAAACTGTCACTAATCCAGGTGTGTTAGACAACAAAGCATTTAAGTATACTCCAATGAAATTGCTCCATGAAACATGTACATCCATATTGATTCTCTTCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1042

Amino Acids

117.59

Weight (kDa)

6.09

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 147 3.6e-14 NB-ARC domain
WHD_ROQ1 PF23282 215 - 283 4.1e-18 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 755
Acc65I GGTACC 1 cut(s) 929
AccB1I GGYRCC 2 cut(s) 929, 969
AccB7I CCANNNNNTGG 1 cut(s) 1733
AccBSI CCGCTC 2 cut(s) 2917, 2984
AccI GTMKAC 2 cut(s) 2600, 3071
AccII CGCG 1 cut(s) 2913
AciI CCGC 6 cut(s) 495, 2652, 2911, 2917, 2952, 2982
AclWI GGATC 3 cut(s) 264, 1246, 2505
AcsI RAATTY 4 cut(s) 1097, 1557, 1831, 2265
AcuI CTGAAG 1 cut(s) 37
AfiI CCNNNNNNNGG 9 cut(s) 455, 496, 1733, 1815, 2057, 2438, 2684, 2786, 2917
AflIII ACRYGT 2 cut(s) 34, 3098
AjiI CACGTC 2 cut(s) 253, 817
AjnI CCWGG 9 cut(s) 307, 2088, 2170, 2185, 2431, 2565, 2683, 2785, 3040
AjuI GAANNNNNNNTTGG 2 cut(s) 1108, 1140
AluBI AGCT 8 cut(s) 222, 389, 415, 512, 1206, 1378, 2667, 2769
AluI AGCT 8 cut(s) 222, 389, 415, 512, 1206, 1378, 2667, 2769
Alw26I GTCTC 4 cut(s) 1204, 1420, 1536, 1643
AlwI GGATC 3 cut(s) 264, 1246, 2505
AlwNI CAGNNNCTG 1 cut(s) 2095
AoxI GGCC 4 cut(s) 115, 1735, 2188, 2333
ApeKI GCWGC 6 cut(s) 854, 1203, 1286, 2901, 2966, 2969
ApoI RAATTY 4 cut(s) 1097, 1557, 1831, 2265
AseI ATTAAT 1 cut(s) 1158
Asp700I GAANNNNTTC 3 cut(s) 588, 1098, 2070
Asp718I GGTACC 1 cut(s) 929
AspS9I GGNCC 4 cut(s) 265, 2687, 2789, 2998
AsuC2I CCSGG 3 cut(s) 868, 2256, 2519
AsuHPI GGTGA 3 cut(s) 1862, 2188, 2879
AsuII TTCGAA 2 cut(s) 63, 2019
AsuNHI GCTAGC 1 cut(s) 185
AvaII GGWCC 4 cut(s) 265, 2687, 2789, 2998
BanI GGYRCC 2 cut(s) 929, 969
BanII GRGCYC 1 cut(s) 867
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BbsI GAAGAC 2 cut(s) 23, 2451
BbvI GCAGC 6 cut(s) 866, 1215, 1298, 2913, 2953, 2956
BccI CCATC 3 cut(s) 1249, 2747, 2981
BceAI ACGGC 3 cut(s) 321, 805, 1274
BcgI CGANNNNNNTGC 4 cut(s) 416, 450, 1007, 1041
BciT130I CCWGG 9 cut(s) 309, 2090, 2172, 2187, 2433, 2567, 2685, 2787, 3042
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 3 cut(s) 868, 2256, 2519
BcoDI GTCTC 4 cut(s) 1204, 1420, 1536, 1643
BfmI CTRYAG 1 cut(s) 1104
BglII AGATCT 1 cut(s) 1711
BisI GCNGC 8 cut(s) 855, 1204, 1287, 2902, 2911, 2967, 2970, 2982
BlpI GCTNAGC 1 cut(s) 850
BlsI GCNGC 8 cut(s) 856, 1205, 1288, 2903, 2912, 2968, 2971, 2983
BmcAI AGTACT 1 cut(s) 282
Bme18I GGWCC 4 cut(s) 265, 2687, 2789, 2998
BmgBI CACGTC 2 cut(s) 253, 817
BmgT120I GGNCC 4 cut(s) 265, 2687, 2789, 2998
BmiI GGNNCC 5 cut(s) 864, 931, 971, 2184, 3000
BmrI ACTGGG 2 cut(s) 1945, 2410
BmtI GCTAGC 1 cut(s) 189
BmuI ACTGGG 2 cut(s) 1945, 2410
BpiI GAAGAC 2 cut(s) 23, 2451
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 850
Bpu14I TTCGAA 2 cut(s) 63, 2019
BpuEI CTTGAG 3 cut(s) 1228, 1625, 2023
BpuMI CCSGG 3 cut(s) 868, 2256, 2519
Bsa29I ATCGAT 1 cut(s) 298
BsaJI CCNNGG 5 cut(s) 866, 973, 2089, 2171, 2432
BsaXI ACNNNNNCTCC 4 cut(s) 2684, 2714, 2786, 2816
Bsc4I CCNNNNNNNGG 9 cut(s) 455, 496, 1733, 1815, 2057, 2438, 2684, 2786, 2917
Bse1I ACTGG 8 cut(s) 1023, 1087, 1940, 2336, 2405, 2414, 2653, 2902
Bse3DI GCAATG 4 cut(s) 669, 2678, 2780, 2895
BseBI CCWGG 9 cut(s) 309, 2090, 2172, 2187, 2433, 2567, 2685, 2787, 3042
BseCI ATCGAT 1 cut(s) 298
BseDI CCNNGG 5 cut(s) 866, 973, 2089, 2171, 2432
BseGI GGATG 8 cut(s) 217, 400, 445, 1044, 1091, 1241, 2958, 3104
BseLI CCNNNNNNNGG 9 cut(s) 455, 496, 1733, 1815, 2057, 2438, 2684, 2786, 2917
BseMI GCAATG 4 cut(s) 669, 2678, 2780, 2895
BseMII CTCAG 6 cut(s) 114, 371, 631, 1078, 1276, 1691
BseNI ACTGG 8 cut(s) 1023, 1087, 1940, 2336, 2405, 2414, 2653, 2902
BseRI GAGGAG 2 cut(s) 875, 2209
BseXI GCAGC 6 cut(s) 866, 1215, 1298, 2913, 2953, 2956
BsgI GTGCAG 1 cut(s) 2379
Bsh1236I CGCG 1 cut(s) 2913
BshFI GGCC 4 cut(s) 117, 1737, 2190, 2335
BshNI GGYRCC 2 cut(s) 929, 969
BshVI ATCGAT 1 cut(s) 298
BsiSI CCGG 4 cut(s) 868, 1060, 2256, 2518
BslFI GGGAC 2 cut(s) 1770, 2106
BslI CCNNNNNNNGG 9 cut(s) 455, 496, 1733, 1815, 2057, 2438, 2684, 2786, 2917
BsmAI GTCTC 4 cut(s) 1204, 1420, 1536, 1643
BsmFI GGGAC 2 cut(s) 1770, 2106
BsnI GGCC 4 cut(s) 117, 1737, 2190, 2335
Bsp119I TTCGAA 2 cut(s) 63, 2019
Bsp1286I GDGCHC 1 cut(s) 867
Bsp1407I TGTACA 4 cut(s) 1072, 2111, 2572, 3101
Bsp1720I GCTNAGC 1 cut(s) 850
BspACI CCGC 6 cut(s) 495, 2652, 2911, 2917, 2952, 2982
BspANI GGCC 4 cut(s) 117, 1737, 2190, 2335
BspCNI CTCAG 6 cut(s) 113, 370, 630, 1077, 1275, 1692
BspDI ATCGAT 1 cut(s) 298
BspFNI CGCG 1 cut(s) 2913
BspHI TCATGA 1 cut(s) 1273
BspLI GGNNCC 5 cut(s) 864, 931, 971, 2184, 3000
BspOI GCTAGC 1 cut(s) 189
BspPI GGATC 3 cut(s) 264, 1246, 2505
BspQI GCTCTTC 1 cut(s) 519
BspT104I TTCGAA 2 cut(s) 63, 2019
BspT107I GGYRCC 2 cut(s) 929, 969
BsrBI CCGCTC 2 cut(s) 2917, 2984
BsrDI GCAATG 4 cut(s) 669, 2678, 2780, 2895
BsrGI TGTACA 4 cut(s) 1072, 2111, 2572, 3101
BsrI ACTGG 8 cut(s) 1023, 1087, 1940, 2336, 2405, 2414, 2653, 2902
BssECI CCNNGG 5 cut(s) 866, 973, 2089, 2171, 2432
BssNAI GTATAC 2 cut(s) 2601, 3072
BssT1I CCWWGG 1 cut(s) 973
Bst1107I GTATAC 2 cut(s) 2601, 3072
Bst2UI CCWGG 9 cut(s) 309, 2090, 2172, 2187, 2433, 2567, 2685, 2787, 3042
Bst4CI ACNGT 8 cut(s) 25, 599, 709, 1793, 2615, 2719, 2821, 3031
Bst6I CTCTTC 7 cut(s) 157, 519, 829, 1507, 1963, 2850, 3125
BstAPI GCANNNNNTGC 1 cut(s) 284
BstAUI TGTACA 4 cut(s) 1072, 2111, 2572, 3101
BstBI TTCGAA 2 cut(s) 63, 2019
BstC8I GCNNGC 3 cut(s) 187, 429, 2915
BstENI CCTNNNNNAGG 1 cut(s) 453
BstF5I GGATG 8 cut(s) 217, 400, 445, 1044, 1091, 1241, 2958, 3104
BstFNI CGCG 1 cut(s) 2913
BstMAI GTCTC 4 cut(s) 1204, 1420, 1536, 1643
BstMWI GCNNNNNNNGC 4 cut(s) 284, 2907, 2910, 2978
BstNI CCWGG 9 cut(s) 309, 2090, 2172, 2187, 2433, 2567, 2685, 2787, 3042
BstNSI RCATGY 3 cut(s) 38, 431, 3102
BstSFI CTRYAG 1 cut(s) 1104
BstUI CGCG 1 cut(s) 2913
BstV1I GCAGC 6 cut(s) 866, 1215, 1298, 2913, 2953, 2956
BstV2I GAAGAC 2 cut(s) 23, 2451
BstX2I RGATCY 2 cut(s) 1251, 1711
BstXI CCANNNNNNTGG 1 cut(s) 1908
BstYI RGATCY 2 cut(s) 1251, 1711
BstZ17I GTATAC 2 cut(s) 2601, 3072
Bsu15I ATCGAT 1 cut(s) 298
BsuRI GGCC 4 cut(s) 117, 1737, 2190, 2335
BsuTUI ATCGAT 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 302
BtrI CACGTC 2 cut(s) 253, 817
BtsCI GGATG 8 cut(s) 217, 400, 445, 1044, 1091, 1241, 2958, 3104
BtsIMutI CAGTG 9 cut(s) 604, 705, 1030, 1080, 2646, 2724, 2748, 2826, 2983
Cac8I GCNNGC 3 cut(s) 187, 429, 2915
CaiI CAGNNNCTG 1 cut(s) 2095
CciI TCATGA 1 cut(s) 1273
Cfr13I GGNCC 4 cut(s) 265, 2687, 2789, 2998
ClaI ATCGAT 1 cut(s) 298
CseI GACGC 1 cut(s) 1738
CspCI CAANNNNNGTGG 2 cut(s) 656, 691
DraI TTTAAA 1 cut(s) 1488
Eam1104I CTCTTC 7 cut(s) 157, 519, 829, 1507, 1963, 2850, 3125
EarI CTCTTC 7 cut(s) 157, 519, 829, 1507, 1963, 2850, 3125
EciI GGCGGA 1 cut(s) 2667
Eco130I CCWWGG 1 cut(s) 973
Eco24I GRGCYC 1 cut(s) 867
Eco47I GGWCC 4 cut(s) 265, 2687, 2789, 2998
Eco57I CTGAAG 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 2998
EcoRI GAATTC 2 cut(s) 1557, 2265
EcoRII CCWGG 9 cut(s) 307, 2088, 2170, 2185, 2431, 2565, 2683, 2785, 3040
EcoT14I CCWWGG 1 cut(s) 973
EcoT22I ATGCAT 2 cut(s) 612, 813
EcoT38I GRGCYC 1 cut(s) 867
ErhI CCWWGG 1 cut(s) 973
FaqI GGGAC 2 cut(s) 1770, 2106
FauI CCCGC 2 cut(s) 488, 2910
FauNDI CATATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 2 cut(s) 2600, 3071
Fnu4HI GCNGC 8 cut(s) 855, 1204, 1287, 2902, 2911, 2967, 2970, 2982
FokI GGATG 8 cut(s) 224, 407, 432, 1051, 1098, 1228, 2945, 3091
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 8 cut(s) 855, 1204, 1287, 2902, 2911, 2967, 2970, 2982
GluI GCNGC 8 cut(s) 855, 1204, 1287, 2902, 2911, 2967, 2970, 2982
HaeIII GGCC 4 cut(s) 117, 1737, 2190, 2335
HapII CCGG 4 cut(s) 868, 1060, 2256, 2518
HgaI GACGC 1 cut(s) 1738
HincII GTYRAC 2 cut(s) 1294, 1933
HindII GTYRAC 2 cut(s) 1294, 1933
HindIII AAGCTT 1 cut(s) 387
HpaII CCGG 4 cut(s) 868, 1060, 2256, 2518
HphI GGTGA 3 cut(s) 1862, 2188, 2879
Hpy166II GTNNAC 5 cut(s) 1294, 1933, 2048, 2601, 3072
Hpy8I GTNNAC 5 cut(s) 1294, 1933, 2048, 2601, 3072
Hpy99I CGWCG 1 cut(s) 1019
HpyAV CCTTC 9 cut(s) 59, 449, 938, 960, 999, 1337, 2256, 2431, 2929
HpyCH4III ACNGT 8 cut(s) 25, 599, 709, 1793, 2615, 2719, 2821, 3031
HpyCH4IV ACGT 5 cut(s) 252, 816, 874, 2347, 2597
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 2907, 2910, 2978
HpySE526I ACGT 5 cut(s) 252, 816, 874, 2347, 2597
KpnI GGTACC 1 cut(s) 933
Ksp22I TGATCA 1 cut(s) 649
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 3 cut(s) 862, 1062, 3093
Lsp1109I GCAGC 6 cut(s) 866, 1215, 1298, 2913, 2953, 2956
MaeII ACGT 5 cut(s) 252, 816, 874, 2347, 2597
MaeIII GTNAC 7 cut(s) 458, 626, 728, 979, 1607, 2348, 3031
MbiI CCGCTC 2 cut(s) 2917, 2984
MfeI CAATTG 2 cut(s) 783, 1506
MflI RGATCY 2 cut(s) 1251, 1711
MhlI GDGCHC 1 cut(s) 867
MlyI GAGTC 4 cut(s) 893, 987, 1422, 1538
MmeI TCCRAC 4 cut(s) 561, 691, 1106, 1812
Mph1103I ATGCAT 2 cut(s) 612, 813
MroXI GAANNNNTTC 3 cut(s) 588, 1098, 2070
MslI CAYNNNNRTG 4 cut(s) 1272, 1906, 2079, 2103
MspA1I CMGCKG 2 cut(s) 495, 2954
MspI CCGG 4 cut(s) 868, 1060, 2256, 2518
MunI CAATTG 2 cut(s) 783, 1506
MvaI CCWGG 9 cut(s) 309, 2090, 2172, 2187, 2433, 2567, 2685, 2787, 3042
MvnI CGCG 1 cut(s) 2913
MwoI GCNNNNNNNGC 4 cut(s) 284, 2907, 2910, 2978
NciI CCSGG 3 cut(s) 868, 2256, 2519
NdeI CATATG 1 cut(s) 261
NheI GCTAGC 1 cut(s) 185
NlaIV GGNNCC 5 cut(s) 864, 931, 971, 2184, 3000
NmuCI GTSAC 5 cut(s) 458, 728, 979, 2348, 3031
NsiI ATGCAT 2 cut(s) 612, 813
NspI RCATGY 3 cut(s) 38, 431, 3102
NspV TTCGAA 2 cut(s) 63, 2019
PaeI GCATGC 1 cut(s) 431
PagI TCATGA 1 cut(s) 1273
PciI ACATGT 2 cut(s) 34, 3098
PciSI GCTCTTC 1 cut(s) 519
PdmI GAANNNNTTC 3 cut(s) 588, 1098, 2070
PfeI GAWTC 9 cut(s) 60, 404, 1145, 1312, 1364, 1664, 2085, 2562, 3115
PflMI CCANNNNNTGG 1 cut(s) 1733
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 8 cut(s) 856, 1205, 1288, 2903, 2912, 2968, 2971, 2983
PleI GAGTC 4 cut(s) 893, 986, 1422, 1537
PpsI GAGTC 4 cut(s) 893, 986, 1422, 1537
PpuMI RGGWCCY 1 cut(s) 2998
PscI ACATGT 2 cut(s) 34, 3098
PshBI ATTAAT 1 cut(s) 1158
PsiI TTATAA 1 cut(s) 755
Psp5II RGGWCCY 1 cut(s) 2998
Psp6I CCWGG 9 cut(s) 307, 2088, 2170, 2185, 2431, 2565, 2683, 2785, 3040
PspGI CCWGG 9 cut(s) 307, 2088, 2170, 2185, 2431, 2565, 2683, 2785, 3040
PspN4I GGNNCC 5 cut(s) 864, 931, 971, 2184, 3000
PspPI GGNCC 4 cut(s) 265, 2687, 2789, 2998
PspPPI RGGWCCY 1 cut(s) 2998
PstNI CAGNNNCTG 1 cut(s) 2095
PsuI RGATCY 2 cut(s) 1251, 1711
RseI CAYNNNNRTG 4 cut(s) 1272, 1906, 2079, 2103
SapI GCTCTTC 1 cut(s) 519
SatI GCNGC 8 cut(s) 855, 1204, 1287, 2902, 2911, 2967, 2970, 2982
Sau96I GGNCC 4 cut(s) 265, 2687, 2789, 2998
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 4 cut(s) 893, 987, 1422, 1538
SduI GDGCHC 1 cut(s) 867
SfcI CTRYAG 1 cut(s) 1104
SfuI TTCGAA 2 cut(s) 63, 2019
SinI GGWCC 4 cut(s) 265, 2687, 2789, 2998
SmiMI CAYNNNNRTG 4 cut(s) 1272, 1906, 2079, 2103
SmlI CTYRAG 3 cut(s) 1207, 1640, 2002
SmoI CTYRAG 3 cut(s) 1207, 1640, 2002
SphI GCATGC 1 cut(s) 431
SsiI CCGC 6 cut(s) 495, 2652, 2911, 2917, 2952, 2982
SspI AATATT 2 cut(s) 88, 2070
StyI CCWWGG 1 cut(s) 973
TaaI ACNGT 8 cut(s) 25, 599, 709, 1793, 2615, 2719, 2821, 3031
TaiI ACGT 5 cut(s) 255, 819, 877, 2350, 2600
TatI WGTACW 6 cut(s) 280, 1072, 2111, 2531, 2572, 3101
TauI GCSGC 2 cut(s) 2913, 2984
TfiI GAWTC 9 cut(s) 60, 404, 1145, 1312, 1364, 1664, 2085, 2562, 3115
TscAI CASTG 9 cut(s) 604, 712, 1030, 1087, 2653, 2724, 2755, 2826, 2983
TseFI GTSAC 5 cut(s) 458, 728, 979, 2348, 3031
TseI GCWGC 6 cut(s) 854, 1203, 1286, 2901, 2966, 2969
Tsp45I GTSAC 5 cut(s) 458, 728, 979, 2348, 3031
TspGWI ACGGA 1 cut(s) 2628
TspRI CASTG 9 cut(s) 604, 712, 1030, 1087, 2653, 2724, 2755, 2826, 2983
Van91I CCANNNNNTGG 1 cut(s) 1733
VpaK11BI GGWCC 4 cut(s) 265, 2687, 2789, 2998
VspI ATTAAT 1 cut(s) 1158
XagI CCTNNNNNAGG 1 cut(s) 453
XapI RAATTY 4 cut(s) 1097, 1557, 1831, 2265
XbaI TCTAGA 1 cut(s) 1315
XceI RCATGY 3 cut(s) 38, 431, 3102
XcmI CCANNNNNNNNNTGG 1 cut(s) 1367
XmiI GTMKAC 2 cut(s) 2600, 3071
XmnI GAANNNNTTC 3 cut(s) 588, 1098, 2070
ZrmI AGTACT 1 cut(s) 282
Zsp2I ATGCAT 2 cut(s) 612, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.