Rw1G017970

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
39644016 .. 39647616
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017970.1

Sequence Viewer

Length: 3165 bp
ATGCAGTATCAGGTTGCAAACATCGTTTCATGGTTACAAGATGGATCATCTGATGTTAGCATATATGGAATTTCTGGGATTGGTGGTATTGGAAAGACAACCATTGCGCAAGTAGTTTATAACTCATTTTTCAGAAGTTTTGAAGGAAGCAGTTTCCTTGAAAACATCAGAGAAGTTTCAGAACAACCCAATGGCTTAGTTCGACTACAGAAGCAACTTCTTGCTGATATTTTGAAGGGAAGGAAAGTGAAAGTACAGAGTGTTAGTGAGGGAATAATTAAGATTAGAGATTTCATAAGCACCAAAAAAGTACTTCTTGTCCTCGATGATGTTGATCATCTAGGTCAGTTAGATGCAGTAGTTGGTATGAGAGATTGTTTTTGTCCAGGAAGTAAAATTATTATAACTACTAGGCATTCTGGGTTGTTAAAGGCTAGTCAAGTTGTTAAGGTGCATAGCGTTAGAACTTTAAATGATGCTCAATCACTGGAGCTTTTTAGTTGGCATTCTTTTGGACAAGACCATCCAGTTGCAGGTTACGTCGAACTTTCAGAAGGGGTAGTTAACCACTGTGGAGGACTACCTTTAGCTCTTCAAACTTTGGGTTCTTCTTTATCGGGGACAACGTTAGATGTATGGGAAAGTGCATTAAAGAAACTGAATGCTATTCCAAACAGTGAAGTCTTGAGCAAGCTTAGAATAAGCTACGACTCTTTACAAGATGACCATGATCAAAATTTGTTTCTCCATCTTGCTTGTTTCTTTATTGGAAAGGACAAGGATGTTGTGGTCAAAATATTAGATGAATGTAATTTTTACACAATTGTTGGTATTCAAAATCTTGTTGATAGATGTTTGGTAACAATCAATGTAAATAATGTGGTGAGCATGCATCAAATGATTCGTGACATGGGAAGAGAAATTGTTCGACAAGAATCAAGGGAGCCGGAGAAACGCAGTCGATTATGGGATCCCAAAGATTCCTTGAATGTACTGATGAGAGAAAAGAAAGGTTCAGACACAGTTGAAGGTCTTGCCCTGAACATGTACCGGTACCCTGTCGTCTTGGAAACCAAAGCATTTGCAGGGATGCACAAACTGAGATTACTCCAACTTGGTTATGTACAACTGACTGGAAGTTGTGAAGAACTTCCCAAGGGGTTGAAATGGTTGTGCTGGCTTCAGTTTCCGTTGGATTCTATACTCATCAGTTTTCCTTTGGAAAGCCTGGTCGTTCTAGAAATGTCTTGCAGTAGCTTGAGAAAACTCTGGCAGGGAACAAAGCATCTTCCATCTTTGAAGATCCTTGATCTCCGCCATTCCCATGACCTGATAAAAAGCGGTGACTTCTCATTGGTCCCCAATCTAGAGAGACTGATATTTGAAGATTGTTCAAGCTTGGTTGATGTCCATGAATTTGTTGGAAACTTAGAGAAGCTCGTATACTTGAACATGAGGGATTGCAAAAGTATTGTCAAACTTCCAAAGAACATTTGTATGCTGAAAGTACTAGAGACACTTATTATATCCGGTTGCTCAAATCTTTATGAGTTTCCAATGGAGGTTGGGAAGGTGAAACATCTGAAAGTTCTTGAAGCAGATGGAATTTCAATAAATCAATTAGTCACAACTTCTGGGGAAGCCGAATCATGGCCAAGAAAAAGTGTTGTTAACTTTTGGGCTTGTTTGTCCCGCACTTTAGTTCATTTAAGTCTTCCACATTGCAATCTTTCTGATGATTGTTTTCCTTCTGATGCTGTTAACTTATACTCATTGAAGAGTTTGGATCTCAGCAATAATCCAATTTGTAGCTTACCAGATTTCGTCAGAGGCCTTAGAGGGCTCAATTCAATGTTACTTTGGGGGTGCAGAGATCTCAAATCACTTGTAAGGTTACCAAGAGTAAGAACTCTGGATGTCCACTTGTGTGAATCCTTGGAAAGTGTAACGTTTCAATCGATATCGTGCATACCAGAGTCAATAGGCTTGATTGCTTACAAGTCCCAACTAGTTGAGATTGAGTACTGGTTCAAGTTAGAAGCCATTGAAAAAGTGGATTTAGAAATGATCAAGCTTTTGTGTTTGTACAACTTGGAATCCATGGAACGCATTTGGATGCACACCCCATATAACAACGCTGAAGTGACGATGCTTCCCATCCAGGGACTGTATGAATATGGTATATTTAGCACATTTCTTCCTACAAAGGGAAACGACGTTCCAGGCCAGTTCAGCCATACAAGTAAAGGGTCATCACGTTCAATGTCCTTTACTGTGCCCGCACCCTTACTTCCTAATCAAAGGATCCGAGGCTTGAACATATTCTGTGTATATGCAAACTACGATGTTGATGTCAGGTGCATTGATCCAATAATAATTAGAGTCAATAATAAGAGCAAAGGTCTCAAGTGGATCTATGGACCAACATGTTACGGCATTCCAAGCAGCAAAGATGTGGTATGGTTAAGCCATTGGAAGTTGGGAAATCGATTGGACGCTGGCGATGAAGTTACTGTTACAGTATTTCCATTTGAACCATTCCAGATAAAAGAGTGGGGCTTCCAGGTTGTGCATGAGCAAGAAGGCAAAATAAGTAACCAACACAACACCACATATCCAGATGATAATGACGTTATTGGTAAATATTGTACAGATTTTTCCGAATTATACCAGGTGATGCCGGGAACATACTTCCTCTGCGGTGGACATATAATATATGATAGACAGTCACATGTATTACAAAAAGGGTCAGTTTTGTTCAATCACATTATTGGAGATTCTGATGAAAGTGCAGGTGTGTTGTTACTGATAAATTGGCATTACAAGCTTATTTTATTTATGGTATATTTGTTTCTTCTCACCGAAATAATGTGGACATTTGCAGCAACAAAAGAAGCAATGAGAGACCGAAAAAATTTCTGCAGTCGGAGTGGGCTTGTTACCATTACTGGTGCTGTGTCTTTGATTTGCAGTCCAGGCGGCATTTCAAAAGAAGGAAGGAAATCCCAGCCAAAAATTAAATACACTAGTTTAACCCAGCCAAAAGCTCTACCTTTACTAGTTCGCACTCTCTTTCGCCTTTTCCTTCGTTTGGTTCAACATATTGCAGTTTATTTTTTGATAAAGAAGTTTTTTTTCTCCTATCAAGATCATTTATCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1054

Amino Acids

119.21

Weight (kDa)

7.31

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 2 - 171 6.6e-19 NB-ARC domain
WHD_ROQ1 PF23282 242 - 313 2.5e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 459 - 534 5.2e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 120, 404
AarI CACCTGC 1 cut(s) 2783
Acc16I TGCGCA 1 cut(s) 108
Acc36I ACCTGC 2 cut(s) 524, 2783
Acc65I GGTACC 1 cut(s) 1053
AccB1I GGYRCC 1 cut(s) 1053
AccI GTMKAC 1 cut(s) 1443
AciI CCGC 6 cut(s) 1315, 1341, 1693, 2280, 2700, 2979
AclI AACGTT 2 cut(s) 626, 1949
AclWI GGATC 9 cut(s) 52, 965, 978, 1297, 1794, 2299, 2312, 2360, 2420
AcoI YGGCCR 1 cut(s) 1652
AcsI RAATTY 5 cut(s) 69, 736, 1415, 1605, 2914
AcuI CTGAAG 2 cut(s) 1166, 2160
AfiI CCNNNNNNNGG 5 cut(s) 533, 1650, 2162, 2207, 3091
AflIII ACRYGT 3 cut(s) 1044, 2426, 2731
AgeI ACCGGT 1 cut(s) 1050
AhlI ACTAGT 3 cut(s) 2008, 3026, 3058
AjnI CCWGG 7 cut(s) 385, 1227, 2160, 2221, 2562, 2670, 2974
AleI CACNNNNGTG 1 cut(s) 1926
AloI GAACNNNNNNTCC 2 cut(s) 2202, 2234
Alw26I GTCTC 4 cut(s) 1366, 1508, 2408, 2898
AlwI GGATC 9 cut(s) 52, 965, 978, 1297, 1794, 2299, 2312, 2360, 2420
AlwNI CAGNNNCTG 1 cut(s) 2167
AoxI GGCC 3 cut(s) 1652, 1831, 2224
ApeKI GCWGC 2 cut(s) 2445, 2882
ApoI RAATTY 5 cut(s) 69, 736, 1415, 1605, 2914
ArsI GACNNNNNNTTYG 2 cut(s) 1458, 1490
AsiGI ACCGGT 1 cut(s) 1050
Asp700I GAANNNNTTC 3 cut(s) 924, 1149, 2321
Asp718I GGTACC 1 cut(s) 1053
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 2 cut(s) 1357, 2420
AsuC2I CCSGG 1 cut(s) 2682
AsuHPI GGTGA 5 cut(s) 895, 1355, 1585, 2686, 2851
AvaII GGWCC 2 cut(s) 1357, 2420
BaeGI GKGCMC 1 cut(s) 2280
BalI TGGCCA 1 cut(s) 1654
BamHI GGATCC 2 cut(s) 970, 2304
BanI GGYRCC 1 cut(s) 1053
BanII GRGCYC 1 cut(s) 1845
BarI GAAGNNNNNNTAC 2 cut(s) 1427, 1459
BbsI GAAGAC 1 cut(s) 1706
BbvI GCAGC 2 cut(s) 2457, 2894
BccI CCATC 6 cut(s) 35, 531, 756, 1300, 1595, 2165
BceAI ACGGC 1 cut(s) 2449
BciT130I CCWGG 7 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2976
BclI TGATCA 3 cut(s) 334, 730, 2067
BcnI CCSGG 1 cut(s) 2682
BcoDI GTCTC 4 cut(s) 1366, 1508, 2408, 2898
BcuI ACTAGT 3 cut(s) 2008, 3026, 3058
BfaI CTAG 9 cut(s) 341, 411, 435, 1238, 1367, 1511, 2009, 3027, 3059
BfmI CTRYAG 2 cut(s) 206, 2920
BfuAI ACCTGC 2 cut(s) 524, 2783
BglII AGATCT 1 cut(s) 1873
BisI GCNGC 3 cut(s) 2446, 2883, 2980
BlsI GCNGC 3 cut(s) 2447, 2884, 2981
BmcAI AGTACT 3 cut(s) 312, 1509, 2024
Bme1390I CCNGG 8 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2682, 2976
Bme18I GGWCC 2 cut(s) 1357, 2420
BmgT120I GGNCC 2 cut(s) 1357, 2420
BmiI GGNNCC 5 cut(s) 945, 972, 1055, 1359, 2306
BmrFI CCNGG 8 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2682, 2976
BmsI GCATC 9 cut(s) 343, 466, 901, 1080, 1294, 1744, 2106, 2139, 2667
BpiI GAAGAC 1 cut(s) 1706
BpmI CTGGAG 1 cut(s) 509
BpuEI CTTGAG 3 cut(s) 706, 1279, 2390
BpuMI CCSGG 1 cut(s) 2682
Bsa29I ATCGAT 2 cut(s) 1958, 2488
BsaBI GATNNNNATC 1 cut(s) 333
BsaI GGTCTC 2 cut(s) 2408, 2898
BsaJI CCNNGG 5 cut(s) 1155, 1935, 2100, 2161, 2308
BsaWI WCCGGW 2 cut(s) 1050, 1529
Bsc4I CCNNNNNNNGG 5 cut(s) 533, 1650, 2162, 2207, 3091
Bse118I RCCGGY 1 cut(s) 1050
Bse1I ACTGG 6 cut(s) 492, 527, 1138, 2030, 2227, 2953
Bse3DI GCAATG 3 cut(s) 102, 1720, 2904
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 7 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2976
BseCI ATCGAT 2 cut(s) 1958, 2488
BseDI CCNNGG 5 cut(s) 1155, 1935, 2100, 2161, 2308
BseGI GGATG 6 cut(s) 523, 787, 1095, 1921, 2121, 2157
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 5 cut(s) 533, 1650, 2162, 2207, 3091
BseMI GCAATG 3 cut(s) 102, 1720, 2904
BseMII CTCAG 3 cut(s) 1091, 1804, 3150
BseNI ACTGG 6 cut(s) 492, 527, 1138, 2030, 2227, 2953
BseSI GKGCMC 1 cut(s) 2280
BseXI GCAGC 2 cut(s) 2457, 2894
BseYI CCCAGC 2 cut(s) 3006, 3036
BsgI GTGCAG 2 cut(s) 1888, 2811
BshFI GGCC 3 cut(s) 1654, 1833, 2226
BshNI GGYRCC 1 cut(s) 1053
BshTI ACCGGT 1 cut(s) 1050
BshVI ATCGAT 2 cut(s) 1958, 2488
BsiSI CCGG 4 cut(s) 947, 1051, 1530, 2681
BslFI GGGAC 5 cut(s) 634, 1343, 1675, 1987, 2178
BslI CCNNNNNNNGG 5 cut(s) 533, 1650, 2162, 2207, 3091
BsmAI GTCTC 4 cut(s) 1366, 1508, 2408, 2898
BsmFI GGGAC 5 cut(s) 634, 1343, 1675, 1987, 2178
BsmI GAATGC 4 cut(s) 415, 505, 667, 2436
BsnI GGCC 3 cut(s) 1654, 1833, 2226
Bso31I GGTCTC 2 cut(s) 2408, 2898
Bsp1286I GDGCHC 2 cut(s) 1845, 2280
Bsp1407I TGTACA 3 cut(s) 1123, 2085, 2648
Bsp19I CCATGG 1 cut(s) 2100
BspACI CCGC 6 cut(s) 1315, 1341, 1693, 2280, 2700, 2979
BspANI GGCC 3 cut(s) 1654, 1833, 2226
BspCNI CTCAG 3 cut(s) 1092, 1803, 3151
BspDI ATCGAT 2 cut(s) 1958, 2488
BspLI GGNNCC 5 cut(s) 945, 972, 1055, 1359, 2306
BspMAI CTGCAG 1 cut(s) 2924
BspMI ACCTGC 2 cut(s) 524, 2783
BspPI GGATC 9 cut(s) 52, 965, 978, 1297, 1794, 2299, 2312, 2360, 2420
BspQI GCTCTTC 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 1053
BspTNI GGTCTC 2 cut(s) 2408, 2898
BsrDI GCAATG 3 cut(s) 102, 1720, 2904
BsrFI RCCGGY 1 cut(s) 1050
BsrGI TGTACA 3 cut(s) 1123, 2085, 2648
BsrI ACTGG 6 cut(s) 492, 527, 1138, 2030, 2227, 2953
BssAI RCCGGY 1 cut(s) 1050
BssECI CCNNGG 5 cut(s) 1155, 1935, 2100, 2161, 2308
BssNAI GTATAC 1 cut(s) 1444
BssT1I CCWWGG 3 cut(s) 1155, 1935, 2100
Bst1107I GTATAC 1 cut(s) 1444
Bst2UI CCWGG 7 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2976
Bst4CI ACNGT 8 cut(s) 572, 677, 1024, 2169, 2275, 2515, 2521, 2727
Bst6I CTCTTC 3 cut(s) 597, 910, 1772
BstAUI TGTACA 3 cut(s) 1123, 2085, 2648
BstC8I GCNNGC 5 cut(s) 692, 890, 1178, 2280, 2500
BstDEI CTNAG 7 cut(s) 196, 695, 1100, 1429, 1790, 1835, 3159
BstDSI CCRYGG 1 cut(s) 2100
BstEII GGTNACC 1 cut(s) 1893
BstF5I GGATG 6 cut(s) 523, 787, 1095, 1921, 2121, 2157
BstHHI GCGC 1 cut(s) 109
BstMAI GTCTC 4 cut(s) 1366, 1508, 2408, 2898
BstMWI GCNNNNNNNGC 4 cut(s) 2232, 2442, 2824, 2976
BstNI CCWGG 7 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2976
BstNSI RCATGY 4 cut(s) 892, 1048, 2430, 2735
BstPI GGTNACC 1 cut(s) 1893
BstSCI CCNGG 8 cut(s) 385, 1227, 2160, 2221, 2562, 2670, 2680, 2974
BstSFI CTRYAG 2 cut(s) 206, 2920
BstSLI GKGCMC 1 cut(s) 2280
BstV1I GCAGC 2 cut(s) 2457, 2894
BstV2I GAAGAC 1 cut(s) 1706
BstX2I RGATCY 6 cut(s) 970, 1302, 1786, 1873, 2304, 2412
BstYI RGATCY 6 cut(s) 970, 1302, 1786, 1873, 2304, 2412
BstZ17I GTATAC 1 cut(s) 1444
Bsu15I ATCGAT 2 cut(s) 1958, 2488
BsuRI GGCC 3 cut(s) 1654, 1833, 2226
BsuTUI ATCGAT 2 cut(s) 1958, 2488
BtgI CCRYGG 1 cut(s) 2100
BtgZI GCGATG 1 cut(s) 2517
BtsCI GGATG 6 cut(s) 523, 787, 1095, 1921, 2121, 2157
BtsIMutI CAGTG 3 cut(s) 485, 568, 682
BveI ACCTGC 2 cut(s) 524, 2783
Cac8I GCNNGC 5 cut(s) 692, 890, 1178, 2280, 2500
CaiI CAGNNNCTG 1 cut(s) 2167
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 1050
Cfr13I GGNCC 2 cut(s) 1357, 2420
ClaI ATCGAT 2 cut(s) 1958, 2488
CseI GACGC 1 cut(s) 2504
CsiI ACCWGGT 1 cut(s) 2670
CspAI ACCGGT 1 cut(s) 1050
DdeI CTNAG 7 cut(s) 196, 695, 1100, 1429, 1790, 1835, 3159
DraI TTTAAA 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 1652
Eam1104I CTCTTC 3 cut(s) 597, 910, 1772
EarI CTCTTC 3 cut(s) 597, 910, 1772
EciI GGCGGA 1 cut(s) 1304
Eco130I CCWWGG 3 cut(s) 1155, 1935, 2100
Eco147I AGGCCT 1 cut(s) 1833
Eco24I GRGCYC 1 cut(s) 1845
Eco31I GGTCTC 2 cut(s) 2408, 2898
Eco32I GATATC 1 cut(s) 1962
Eco47I GGWCC 2 cut(s) 1357, 2420
Eco57I CTGAAG 2 cut(s) 1166, 2160
Eco91I GGTNACC 1 cut(s) 1893
EcoO65I GGTNACC 1 cut(s) 1893
EcoRII CCWGG 7 cut(s) 385, 1227, 2160, 2221, 2562, 2670, 2974
EcoRV GATATC 1 cut(s) 1962
EcoT14I CCWWGG 3 cut(s) 1155, 1935, 2100
EcoT22I ATGCAT 1 cut(s) 894
EcoT38I GRGCYC 1 cut(s) 1845
ErhI CCWWGG 3 cut(s) 1155, 1935, 2100
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 5 cut(s) 634, 1343, 1675, 1987, 2178
FauI CCCGC 2 cut(s) 1700, 2287
FbaI TGATCA 3 cut(s) 334, 730, 2067
FblI GTMKAC 1 cut(s) 1443
Fnu4HI GCNGC 3 cut(s) 2446, 2883, 2980
FokI GGATG 6 cut(s) 510, 794, 1102, 1928, 2128, 2144
FriOI GRGCYC 1 cut(s) 1845
Fsp4HI GCNGC 3 cut(s) 2446, 2883, 2980
FspBI CTAG 9 cut(s) 341, 411, 435, 1238, 1367, 1511, 2009, 3027, 3059
FspI TGCGCA 1 cut(s) 108
GlaI GCGC 1 cut(s) 108
GluI GCNGC 3 cut(s) 2446, 2883, 2980
GsaI CCCAGC 2 cut(s) 3010, 3040
GsuI CTGGAG 1 cut(s) 509
HaeIII GGCC 3 cut(s) 1654, 1833, 2226
HapII CCGG 4 cut(s) 947, 1051, 1530, 2681
HgaI GACGC 1 cut(s) 2504
HhaI GCGC 1 cut(s) 109
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 3 cut(s) 565, 1672, 1762
HindII GTYRAC 3 cut(s) 565, 1672, 1762
HindIII AAGCTT 4 cut(s) 692, 1396, 2072, 2825
HpaI GTTAAC 3 cut(s) 565, 1672, 1762
HpaII CCGG 4 cut(s) 947, 1051, 1530, 2681
HphI GGTGA 5 cut(s) 895, 1355, 1585, 2686, 2851
Hpy166II GTNNAC 7 cut(s) 565, 1444, 1672, 1762, 1921, 2705, 2874
Hpy188III TCNNGA 9 cut(s) 685, 905, 1238, 1367, 1592, 1913, 2542, 2618, 3146
Hpy8I GTNNAC 7 cut(s) 565, 1444, 1672, 1762, 1921, 2705, 2874
Hpy99I CGWCG 2 cut(s) 545, 2219
HpyCH4III ACNGT 8 cut(s) 572, 677, 1024, 2169, 2275, 2515, 2521, 2727
HpyCH4IV ACGT 6 cut(s) 540, 626, 1949, 2217, 2257, 2631
HpyF10VI GCNNNNNNNGC 4 cut(s) 2232, 2442, 2824, 2976
HpyF3I CTNAG 7 cut(s) 196, 695, 1100, 1429, 1790, 1835, 3159
HpySE526I ACGT 6 cut(s) 540, 626, 1949, 2217, 2257, 2631
HspAI GCGC 1 cut(s) 107
KpnI GGTACC 1 cut(s) 1057
Ksp22I TGATCA 3 cut(s) 334, 730, 2067
KspAI GTTAAC 3 cut(s) 565, 1672, 1762
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 2 cut(s) 490, 943
Lsp1109I GCAGC 2 cut(s) 2457, 2894
LweI GCATC 9 cut(s) 343, 466, 901, 1080, 1294, 1744, 2106, 2139, 2667
MabI ACCWGGT 1 cut(s) 2670
MaeI CTAG 9 cut(s) 341, 411, 435, 1238, 1367, 1511, 2009, 3027, 3059
MaeII ACGT 6 cut(s) 540, 626, 1949, 2217, 2257, 2631
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 6 cut(s) 970, 1302, 1786, 1873, 2304, 2412
MhlI GDGCHC 2 cut(s) 1845, 2280
MlsI TGGCCA 1 cut(s) 1654
MluNI TGGCCA 1 cut(s) 1654
MlyI GAGTC 3 cut(s) 704, 1985, 2391
MmeI TCCRAC 4 cut(s) 1135, 1173, 1402, 2906
MnlI CCTC 9 cut(s) 262, 332, 569, 1449, 1555, 1823, 1832, 2303, 2705
Mox20I TGGCCA 1 cut(s) 1654
Mph1103I ATGCAT 1 cut(s) 894
MroXI GAANNNNTTC 3 cut(s) 924, 1149, 2321
MscI TGGCCA 1 cut(s) 1654
MslI CAYNNNNRTG 4 cut(s) 1323, 1496, 1926, 2114
Msp20I TGGCCA 1 cut(s) 1654
MspI CCGG 4 cut(s) 947, 1051, 1530, 2681
MspR9I CCNGG 8 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2682, 2976
MunI CAATTG 1 cut(s) 822
Mva1269I GAATGC 4 cut(s) 415, 505, 667, 2436
MvaI CCWGG 7 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2976
MwoI GCNNNNNNNGC 4 cut(s) 2232, 2442, 2824, 2976
NciI CCSGG 1 cut(s) 2682
NcoI CCATGG 1 cut(s) 2100
NlaIV GGNNCC 5 cut(s) 945, 972, 1055, 1359, 2306
NmuCI GTSAC 5 cut(s) 905, 1343, 1624, 2143, 2727
NsbI TGCGCA 1 cut(s) 108
NsiI ATGCAT 1 cut(s) 894
NspI RCATGY 4 cut(s) 892, 1048, 2430, 2735
OliI CACNNNNGTG 1 cut(s) 1926
PaeI GCATGC 1 cut(s) 892
PaqCI CACCTGC 1 cut(s) 2783
PceI AGGCCT 1 cut(s) 1833
PciI ACATGT 3 cut(s) 1044, 2426, 2731
PciSI GCTCTTC 1 cut(s) 597
PcsI WCGNNNNNNNCGW 2 cut(s) 623, 1955
PctI GAATGC 4 cut(s) 415, 505, 667, 2436
PdmI GAANNNNTTC 3 cut(s) 924, 1149, 2321
PfeI GAWTC 8 cut(s) 901, 935, 980, 1196, 1646, 1931, 2096, 2777
PfoI TCCNGGA 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 1050
PkrI GCNGC 3 cut(s) 2447, 2884, 2981
PleI GAGTC 3 cut(s) 704, 1984, 2390
PpsI GAGTC 3 cut(s) 704, 1984, 2390
PscI ACATGT 3 cut(s) 1044, 2426, 2731
PsiI TTATAA 2 cut(s) 120, 404
Psp1406I AACGTT 2 cut(s) 626, 1949
Psp6I CCWGG 7 cut(s) 385, 1227, 2160, 2221, 2562, 2670, 2974
PspEI GGTNACC 1 cut(s) 1893
PspFI CCCAGC 2 cut(s) 3006, 3036
PspGI CCWGG 7 cut(s) 385, 1227, 2160, 2221, 2562, 2670, 2974
PspN4I GGNNCC 5 cut(s) 945, 972, 1055, 1359, 2306
PspPI GGNCC 2 cut(s) 1357, 2420
PstI CTGCAG 1 cut(s) 2924
PstNI CAGNNNCTG 1 cut(s) 2167
PsuI RGATCY 6 cut(s) 970, 1302, 1786, 1873, 2304, 2412
RseI CAYNNNNRTG 4 cut(s) 1323, 1496, 1926, 2114
SapI GCTCTTC 1 cut(s) 597
SatI GCNGC 3 cut(s) 2446, 2883, 2980
Sau96I GGNCC 2 cut(s) 1357, 2420
ScaI AGTACT 3 cut(s) 312, 1509, 2024
SchI GAGTC 3 cut(s) 704, 1985, 2391
ScrFI CCNGG 8 cut(s) 387, 1229, 2162, 2223, 2564, 2672, 2682, 2976
SduI GDGCHC 2 cut(s) 1845, 2280
SexAI ACCWGGT 1 cut(s) 2670
SfaNI GCATC 9 cut(s) 343, 466, 901, 1080, 1294, 1744, 2106, 2139, 2667
SfcI CTRYAG 2 cut(s) 206, 2920
SinI GGWCC 2 cut(s) 1357, 2420
SmiMI CAYNNNNRTG 4 cut(s) 1323, 1496, 1926, 2114
SmlI CTYRAG 3 cut(s) 685, 1258, 2405
SmoI CTYRAG 3 cut(s) 685, 1258, 2405
SpeI ACTAGT 3 cut(s) 2008, 3026, 3058
SphI GCATGC 1 cut(s) 892
SseBI AGGCCT 1 cut(s) 1833
SsiI CCGC 6 cut(s) 1315, 1341, 1693, 2280, 2700, 2979
SspI AATATT 2 cut(s) 798, 2645
SspMI CTAG 9 cut(s) 341, 411, 435, 1238, 1367, 1511, 2009, 3027, 3059
StuI AGGCCT 1 cut(s) 1833
StyD4I CCNGG 8 cut(s) 385, 1227, 2160, 2221, 2562, 2670, 2680, 2974
StyI CCWWGG 3 cut(s) 1155, 1935, 2100
TaaI ACNGT 8 cut(s) 572, 677, 1024, 2169, 2275, 2515, 2521, 2727
TaiI ACGT 6 cut(s) 543, 629, 1952, 2220, 2260, 2634
TaqI TCGA 7 cut(s) 202, 324, 543, 928, 961, 1958, 2488
TaqII GACCGA 1 cut(s) 2922
TatI WGTACW 8 cut(s) 253, 310, 991, 1123, 1507, 2022, 2085, 2648
TauI GCSGC 1 cut(s) 2982
TfiI GAWTC 8 cut(s) 901, 935, 980, 1196, 1646, 1931, 2096, 2777
TscAI CASTG 3 cut(s) 492, 575, 682
TseFI GTSAC 5 cut(s) 905, 1343, 1624, 2143, 2727
TseI GCWGC 2 cut(s) 2445, 2882
Tsp45I GTSAC 5 cut(s) 905, 1343, 1624, 2143, 2727
TspDTI ATGAA 8 cut(s) 18, 283, 819, 1428, 1694, 2187, 2520, 2799
TspGWI ACGGA 1 cut(s) 1179
TspRI CASTG 3 cut(s) 492, 575, 682
VpaK11BI GGWCC 2 cut(s) 1357, 2420
XapI RAATTY 5 cut(s) 69, 736, 1415, 1605, 2914
XbaI TCTAGA 2 cut(s) 1237, 1366
XceI RCATGY 4 cut(s) 892, 1048, 2430, 2735
XcmI CCANNNNNNNNNTGG 2 cut(s) 1418, 2050
XmiI GTMKAC 1 cut(s) 1443
XmnI GAANNNNTTC 3 cut(s) 924, 1149, 2321
XspI CTAG 9 cut(s) 341, 411, 435, 1238, 1367, 1511, 2009, 3027, 3059
ZrmI AGTACT 3 cut(s) 312, 1509, 2024
Zsp2I ATGCAT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.