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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1712 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 342 |
| AccI | GTMKAC | 2 cut(s) | 334, 666 |
| AciI | CCGC | 1 cut(s) | 2024 |
| AclI | AACGTT | 1 cut(s) | 1465 |
| AclWI | GGATC | 3 cut(s) | 694, 1976, 1985 |
| AcoI | YGGCCR | 1 cut(s) | 1573 |
| AcsI | RAATTY | 6 cut(s) | 544, 581, 680, 1480, 1549, 1641 |
| AcyI | GRCGYC | 1 cut(s) | 343 |
| AfaI | GTAC | 9 cut(s) | 366, 385, 522, 842, 1272, 1358, 1382, 1594, 1960 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 887, 1256, 1517, 2039, 2125 |
| AflIII | ACRYGT | 2 cut(s) | 517, 1489 |
| AjiI | CACGTC | 2 cut(s) | 518, 1749 |
| AjnI | CCWGG | 5 cut(s) | 408, 1009, 1570, 1780, 2057 |
| AleI | CACNNNNGTG | 1 cut(s) | 1350 |
| AluBI | AGCT | 7 cut(s) | 31, 78, 654, 1440, 1473, 1584, 1930 |
| AluI | AGCT | 7 cut(s) | 31, 78, 654, 1440, 1473, 1584, 1930 |
| Alw21I | GWGCWC | 1 cut(s) | 1944 |
| Alw26I | GTCTC | 3 cut(s) | 449, 826, 1882 |
| AlwI | GGATC | 3 cut(s) | 694, 1976, 1985 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1522 |
| AoxI | GGCC | 6 cut(s) | 575, 724, 1007, 1573, 2099, 2273 |
| ApeKI | GCWGC | 3 cut(s) | 2177, 2180, 2237 |
| ApoI | RAATTY | 6 cut(s) | 544, 581, 680, 1480, 1549, 1641 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 113, 774, 1433, 1466 |
| AspS9I | GGNCC | 2 cut(s) | 1760, 2274 |
| AsuHPI | GGTGA | 4 cut(s) | 244, 268, 1364, 2013 |
| AvaII | GGWCC | 1 cut(s) | 1760 |
| BbsI | GAAGAC | 1 cut(s) | 1193 |
| Bbv12I | GWGCWC | 1 cut(s) | 1944 |
| BbvI | GCAGC | 3 cut(s) | 2189, 2192, 2224 |
| BceAI | ACGGC | 2 cut(s) | 539, 1022 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1021, 1055 |
| BciT130I | CCWGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| BclI | TGATCA | 1 cut(s) | 2164 |
| BcoDI | GTCTC | 3 cut(s) | 449, 826, 1882 |
| BfaI | CTAG | 7 cut(s) | 173, 305, 527, 764, 827, 1161, 2228 |
| BfmI | CTRYAG | 2 cut(s) | 552, 1585 |
| BisI | GCNGC | 3 cut(s) | 2178, 2181, 2238 |
| BlsI | GCNGC | 3 cut(s) | 2179, 2182, 2239 |
| BmcAI | AGTACT | 2 cut(s) | 366, 1382 |
| Bme1390I | CCNGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| Bme18I | GGWCC | 1 cut(s) | 1760 |
| BmgBI | CACGTC | 2 cut(s) | 518, 1749 |
| BmgT120I | GGNCC | 2 cut(s) | 1760, 2274 |
| BmiI | GGNNCC | 1 cut(s) | 1569 |
| BmrFI | CCNGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| BmrI | ACTGGG | 1 cut(s) | 1566 |
| BmsI | GCATC | 7 cut(s) | 215, 433, 477, 864, 1081, 1534, 1789 |
| BmuI | ACTGGG | 1 cut(s) | 1566 |
| BoxI | GACNNNNGTC | 2 cut(s) | 662, 1751 |
| BpiI | GAAGAC | 1 cut(s) | 1193 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 703, 735 |
| BpmI | CTGGAG | 1 cut(s) | 1962 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2163 |
| BsaHI | GRCGYC | 1 cut(s) | 343 |
| BsaI | GGTCTC | 1 cut(s) | 1882 |
| BsaJI | CCNNGG | 2 cut(s) | 397, 738 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 489, 519, 1183, 1213, 1848, 1878 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 887, 1256, 1517, 2039, 2125 |
| Bse118I | RCCGGY | 1 cut(s) | 1575 |
| Bse1I | ACTGG | 3 cut(s) | 385, 1511, 1561 |
| Bse3DI | GCAATG | 1 cut(s) | 123 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2163 |
| BseBI | CCWGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| BseDI | CCNNGG | 2 cut(s) | 397, 738 |
| BseGI | GGATG | 7 cut(s) | 185, 424, 492, 539, 879, 1265, 2222 |
| BseJI | GATNNNNATC | 1 cut(s) | 2163 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 887, 1256, 1517, 2039, 2125 |
| BseMI | GCAATG | 1 cut(s) | 123 |
| BseMII | CTCAG | 4 cut(s) | 312, 359, 2145, 2300 |
| BseNI | ACTGG | 3 cut(s) | 385, 1511, 1561 |
| BseRI | GAGGAG | 2 cut(s) | 1204, 1806 |
| BseXI | GCAGC | 3 cut(s) | 2189, 2192, 2224 |
| BshFI | GGCC | 6 cut(s) | 577, 726, 1009, 1575, 2101, 2275 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1944 |
| BsiSI | CCGG | 1 cut(s) | 1576 |
| BslFI | GGGAC | 2 cut(s) | 161, 1533 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 887, 1256, 1517, 2039, 2125 |
| BsmAI | GTCTC | 3 cut(s) | 449, 826, 1882 |
| BsmFI | GGGAC | 2 cut(s) | 161, 1533 |
| BsmI | GAATGC | 1 cut(s) | 204 |
| BsnI | GGCC | 6 cut(s) | 577, 726, 1009, 1575, 2101, 2275 |
| Bso31I | GGTCTC | 1 cut(s) | 1882 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1944 |
| Bsp1407I | TGTACA | 1 cut(s) | 1270 |
| Bsp143I | GATC | 7 cut(s) | 103, 268, 699, 1981, 1990, 2158, 2164 |
| Bsp19I | CCATGG | 1 cut(s) | 738 |
| BspACI | CCGC | 1 cut(s) | 2024 |
| BspANI | GGCC | 6 cut(s) | 577, 726, 1009, 1575, 2101, 2275 |
| BspCNI | CTCAG | 4 cut(s) | 313, 360, 2144, 2299 |
| BspHI | TCATGA | 2 cut(s) | 57, 808 |
| BspLI | GGNNCC | 1 cut(s) | 1569 |
| BspPI | GGATC | 3 cut(s) | 694, 1976, 1985 |
| BspQI | GCTCTTC | 2 cut(s) | 309, 2139 |
| BspTNI | GGTCTC | 1 cut(s) | 1882 |
| BsrDI | GCAATG | 1 cut(s) | 123 |
| BsrFI | RCCGGY | 1 cut(s) | 1575 |
| BsrGI | TGTACA | 1 cut(s) | 1270 |
| BsrI | ACTGG | 3 cut(s) | 385, 1511, 1561 |
| BssAI | RCCGGY | 1 cut(s) | 1575 |
| BssECI | CCNNGG | 2 cut(s) | 397, 738 |
| BssMI | GATC | 7 cut(s) | 103, 268, 699, 1981, 1990, 2158, 2164 |
| BssNI | GRCGYC | 1 cut(s) | 343 |
| BssT1I | CCWWGG | 2 cut(s) | 397, 738 |
| Bst2UI | CCWGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| Bst4CI | ACNGT | 6 cut(s) | 86, 199, 437, 460, 1775, 2304 |
| Bst6I | CTCTTC | 5 cut(s) | 283, 309, 1783, 1880, 2139 |
| BstACI | GRCGYC | 1 cut(s) | 343 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2186, 2202 |
| BstAUI | TGTACA | 1 cut(s) | 1270 |
| BstC8I | GCNNGC | 3 cut(s) | 797, 893, 1442 |
| BstDEI | CTNAG | 9 cut(s) | 68, 321, 368, 512, 728, 869, 1067, 2131, 2286 |
| BstDSI | CCRYGG | 1 cut(s) | 738 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2037 |
| BstF5I | GGATG | 7 cut(s) | 185, 424, 492, 539, 879, 1265, 2222 |
| BstKTI | GATC | 7 cut(s) | 106, 271, 702, 1984, 1993, 2161, 2167 |
| BstMAI | GTCTC | 3 cut(s) | 449, 826, 1882 |
| BstMBI | GATC | 7 cut(s) | 103, 268, 699, 1981, 1990, 2158, 2164 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1581, 1670, 1734, 2186, 2202 |
| BstNI | CCWGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| BstNSI | RCATGY | 3 cut(s) | 265, 895, 1493 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 662, 1751 |
| BstSCI | CCNGG | 5 cut(s) | 408, 1009, 1570, 1780, 2057 |
| BstSFI | CTRYAG | 2 cut(s) | 552, 1585 |
| BstV1I | GCAGC | 3 cut(s) | 2189, 2192, 2224 |
| BstV2I | GAAGAC | 1 cut(s) | 1193 |
| BstX2I | RGATCY | 2 cut(s) | 699, 1981 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 722 |
| BstYI | RGATCY | 2 cut(s) | 699, 1981 |
| BsuRI | GGCC | 6 cut(s) | 577, 726, 1009, 1575, 2101, 2275 |
| BtgI | CCRYGG | 1 cut(s) | 738 |
| BtrI | CACGTC | 2 cut(s) | 518, 1749 |
| BtsCI | GGATG | 7 cut(s) | 185, 424, 492, 539, 879, 1265, 2222 |
| BtsI | GCAGTG | 1 cut(s) | 2232 |
| BtsIMutI | CAGTG | 2 cut(s) | 2071, 2232 |
| Cac8I | GCNNGC | 3 cut(s) | 797, 893, 1442 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1522 |
| CciI | TCATGA | 2 cut(s) | 57, 808 |
| Cfr10I | RCCGGY | 1 cut(s) | 1575 |
| Cfr13I | GGNCC | 2 cut(s) | 1760, 2274 |
| CseI | GACGC | 1 cut(s) | 332 |
| Csp6I | GTAC | 9 cut(s) | 365, 384, 521, 841, 1271, 1357, 1381, 1593, 1959 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 110, 145 |
| CviQI | GTAC | 9 cut(s) | 365, 384, 521, 841, 1271, 1357, 1381, 1593, 1959 |
| DdeI | CTNAG | 9 cut(s) | 68, 321, 368, 512, 728, 869, 1067, 2131, 2286 |
| DpnI | GATC | 7 cut(s) | 105, 270, 701, 1983, 1992, 2160, 2166 |
| DpnII | GATC | 7 cut(s) | 103, 268, 699, 1981, 1990, 2158, 2164 |
| DraI | TTTAAA | 1 cut(s) | 1486 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 342 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 342 |
| EaeI | YGGCCR | 1 cut(s) | 1573 |
| Eam1104I | CTCTTC | 5 cut(s) | 283, 309, 1783, 1880, 2139 |
| EarI | CTCTTC | 5 cut(s) | 283, 309, 1783, 1880, 2139 |
| Eco130I | CCWWGG | 2 cut(s) | 397, 738 |
| Eco31I | GGTCTC | 1 cut(s) | 1882 |
| Eco47I | GGWCC | 1 cut(s) | 1760 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2037 |
| EcoRII | CCWGG | 5 cut(s) | 408, 1009, 1570, 1780, 2057 |
| EcoT14I | CCWWGG | 2 cut(s) | 397, 738 |
| EcoT22I | ATGCAT | 1 cut(s) | 478 |
| ErhI | CCWWGG | 2 cut(s) | 397, 738 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 341, 373 |
| FaqI | GGGAC | 2 cut(s) | 161, 1533 |
| FbaI | TGATCA | 1 cut(s) | 2164 |
| FblI | GTMKAC | 2 cut(s) | 334, 666 |
| Fnu4HI | GCNGC | 3 cut(s) | 2178, 2181, 2238 |
| FokI | GGATG | 7 cut(s) | 192, 411, 499, 546, 886, 1272, 2229 |
| Fsp4HI | GCNGC | 3 cut(s) | 2178, 2181, 2238 |
| FspBI | CTAG | 7 cut(s) | 173, 305, 527, 764, 827, 1161, 2228 |
| GluI | GCNGC | 3 cut(s) | 2178, 2181, 2238 |
| GsuI | CTGGAG | 1 cut(s) | 1962 |
| HaeIII | GGCC | 6 cut(s) | 577, 726, 1009, 1575, 2101, 2275 |
| HapII | CCGG | 1 cut(s) | 1576 |
| HgaI | GACGC | 1 cut(s) | 332 |
| Hin1I | GRCGYC | 1 cut(s) | 343 |
| HpaII | CCGG | 1 cut(s) | 1576 |
| HphI | GGTGA | 4 cut(s) | 244, 268, 1364, 2013 |
| Hpy166II | GTNNAC | 7 cut(s) | 89, 259, 335, 386, 521, 667, 841 |
| Hpy188I | TCNGA | 6 cut(s) | 108, 273, 313, 1087, 2134, 2289 |
| Hpy8I | GTNNAC | 7 cut(s) | 89, 259, 335, 386, 521, 667, 841 |
| HpyAV | CCTTC | 3 cut(s) | 138, 699, 2258 |
| HpyCH4III | ACNGT | 6 cut(s) | 86, 199, 437, 460, 1775, 2304 |
| HpyCH4IV | ACGT | 4 cut(s) | 328, 517, 1465, 1748 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1581, 1670, 1734, 2186, 2202 |
| HpyF3I | CTNAG | 9 cut(s) | 68, 321, 368, 512, 728, 869, 1067, 2131, 2286 |
| HpySE526I | ACGT | 4 cut(s) | 328, 517, 1465, 1748 |
| Hsp92I | GRCGYC | 1 cut(s) | 343 |
| Ksp22I | TGATCA | 1 cut(s) | 2164 |
| Kzo9I | GATC | 7 cut(s) | 103, 268, 699, 1981, 1990, 2158, 2164 |
| LguI | GCTCTTC | 2 cut(s) | 309, 2139 |
| Lsp1109I | GCAGC | 3 cut(s) | 2189, 2192, 2224 |
| LweI | GCATC | 7 cut(s) | 215, 433, 477, 864, 1081, 1534, 1789 |
| MaeI | CTAG | 7 cut(s) | 173, 305, 527, 764, 827, 1161, 2228 |
| MaeII | ACGT | 4 cut(s) | 328, 517, 1465, 1748 |
| MaeIII | GTNAC | 4 cut(s) | 536, 1634, 2019, 2230 |
| MalI | GATC | 7 cut(s) | 105, 270, 701, 1983, 1992, 2160, 2166 |
| MboI | GATC | 7 cut(s) | 103, 268, 699, 1981, 1990, 2158, 2164 |
| MflI | RGATCY | 2 cut(s) | 699, 1981 |
| MhlI | GDGCHC | 1 cut(s) | 1944 |
| MlyI | GAGTC | 3 cut(s) | 1516, 1761, 2123 |
| MmeI | TCCRAC | 1 cut(s) | 1431 |
| Mph1103I | ATGCAT | 1 cut(s) | 478 |
| MroXI | GAANNNNTTC | 4 cut(s) | 113, 774, 1433, 1466 |
| MseI | TTAA | 5 cut(s) | 560, 1061, 1109, 1289, 1485 |
| MslI | CAYNNNNRTG | 3 cut(s) | 720, 890, 1350 |
| MspI | CCGG | 1 cut(s) | 1576 |
| MspR9I | CCNGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| Mva1269I | GAATGC | 1 cut(s) | 204 |
| MvaI | CCWGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1581, 1670, 1734, 2186, 2202 |
| NcoI | CCATGG | 1 cut(s) | 738 |
| NdeII | GATC | 7 cut(s) | 103, 268, 699, 1981, 1990, 2158, 2164 |
| NlaIV | GGNNCC | 1 cut(s) | 1569 |
| NmuCI | GTSAC | 3 cut(s) | 1634, 2019, 2230 |
| NsiI | ATGCAT | 1 cut(s) | 478 |
| NspI | RCATGY | 3 cut(s) | 265, 895, 1493 |
| OliI | CACNNNNGTG | 1 cut(s) | 1350 |
| PaeI | GCATGC | 1 cut(s) | 895 |
| PagI | TCATGA | 2 cut(s) | 57, 808 |
| PciI | ACATGT | 1 cut(s) | 1489 |
| PciSI | GCTCTTC | 2 cut(s) | 309, 2139 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1028 |
| PctI | GAATGC | 1 cut(s) | 204 |
| PdmI | GAANNNNTTC | 4 cut(s) | 113, 774, 1433, 1466 |
| PfeI | GAWTC | 9 cut(s) | 274, 308, 353, 593, 775, 812, 865, 962, 1232 |
| PfoI | TCCNGGA | 2 cut(s) | 408, 1780 |
| PkrI | GCNGC | 3 cut(s) | 2179, 2182, 2239 |
| PleI | GAGTC | 3 cut(s) | 1515, 1761, 2123 |
| PpsI | GAGTC | 3 cut(s) | 1515, 1761, 2123 |
| PscI | ACATGT | 1 cut(s) | 1489 |
| PshAI | GACNNNNGTC | 2 cut(s) | 662, 1751 |
| PsiI | TTATAA | 1 cut(s) | 1712 |
| Psp1406I | AACGTT | 1 cut(s) | 1465 |
| Psp6I | CCWGG | 5 cut(s) | 408, 1009, 1570, 1780, 2057 |
| PspGI | CCWGG | 5 cut(s) | 408, 1009, 1570, 1780, 2057 |
| PspN4I | GGNNCC | 1 cut(s) | 1569 |
| PspPI | GGNCC | 2 cut(s) | 1760, 2274 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1522 |
| PsuI | RGATCY | 2 cut(s) | 699, 1981 |
| RsaI | GTAC | 9 cut(s) | 366, 385, 522, 842, 1272, 1358, 1382, 1594, 1960 |
| RsaNI | GTAC | 9 cut(s) | 365, 384, 521, 841, 1271, 1357, 1381, 1593, 1959 |
| RseI | CAYNNNNRTG | 3 cut(s) | 720, 890, 1350 |
| SapI | GCTCTTC | 2 cut(s) | 309, 2139 |
| SaqAI | TTAA | 5 cut(s) | 560, 1061, 1109, 1289, 1485 |
| SatI | GCNGC | 3 cut(s) | 2178, 2181, 2238 |
| Sau3AI | GATC | 7 cut(s) | 103, 268, 699, 1981, 1990, 2158, 2164 |
| Sau96I | GGNCC | 2 cut(s) | 1760, 2274 |
| ScaI | AGTACT | 2 cut(s) | 366, 1382 |
| SchI | GAGTC | 3 cut(s) | 1516, 1761, 2123 |
| ScrFI | CCNGG | 5 cut(s) | 410, 1011, 1572, 1782, 2059 |
| SduI | GDGCHC | 1 cut(s) | 1944 |
| SfaNI | GCATC | 7 cut(s) | 215, 433, 477, 864, 1081, 1534, 1789 |
| SfcI | CTRYAG | 2 cut(s) | 552, 1585 |
| SinI | GGWCC | 1 cut(s) | 1760 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 720, 890, 1350 |
| SphI | GCATGC | 1 cut(s) | 895 |
| SsiI | CCGC | 1 cut(s) | 2024 |
| SspI | AATATT | 1 cut(s) | 1845 |
| SspMI | CTAG | 7 cut(s) | 173, 305, 527, 764, 827, 1161, 2228 |
| StyD4I | CCNGG | 5 cut(s) | 408, 1009, 1570, 1780, 2057 |
| StyI | CCWWGG | 2 cut(s) | 397, 738 |
| TaaI | ACNGT | 6 cut(s) | 86, 199, 437, 460, 1775, 2304 |
| TaiI | ACGT | 4 cut(s) | 331, 520, 1468, 1751 |
| TaqI | TCGA | 6 cut(s) | 978, 1022, 1031, 1214, 1230, 1645 |
| TatI | WGTACW | 5 cut(s) | 364, 840, 1270, 1356, 1380 |
| TfiI | GAWTC | 9 cut(s) | 274, 308, 353, 593, 775, 812, 865, 962, 1232 |
| Tru1I | TTAA | 5 cut(s) | 560, 1061, 1109, 1289, 1485 |
| Tru9I | TTAA | 5 cut(s) | 560, 1061, 1109, 1289, 1485 |
| TscAI | CASTG | 2 cut(s) | 2071, 2239 |
| TseFI | GTSAC | 3 cut(s) | 1634, 2019, 2230 |
| TseI | GCWGC | 3 cut(s) | 2177, 2180, 2237 |
| Tsp45I | GTSAC | 3 cut(s) | 1634, 2019, 2230 |
| TspGWI | ACGGA | 3 cut(s) | 1118, 1864, 2167 |
| TspRI | CASTG | 2 cut(s) | 2071, 2239 |
| VpaK11BI | GGWCC | 1 cut(s) | 1760 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2037 |
| XapI | RAATTY | 6 cut(s) | 544, 581, 680, 1480, 1549, 1641 |
| XbaI | TCTAGA | 1 cut(s) | 763 |
| XceI | RCATGY | 3 cut(s) | 265, 895, 1493 |
| XmiI | GTMKAC | 2 cut(s) | 334, 666 |
| XmnI | GAANNNNTTC | 4 cut(s) | 113, 774, 1433, 1466 |
| XspI | CTAG | 7 cut(s) | 173, 305, 527, 764, 827, 1161, 2228 |
| ZrmI | AGTACT | 2 cut(s) | 366, 1382 |
| Zsp2I | ATGCAT | 1 cut(s) | 478 |