Rroxscaffold_4G00307020

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000036
Physical Location & Seq
Reverse (-)
28062998 .. 28115199
52202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307020.1

Sequence Viewer

Length: 3624 bp
ATGGCTCTCGACAGATATCAATTAGAAGCTGCTTCCCCTTCCACTTCCGCTTCTCCTTCTCAGTTCAGCTACGACGTGTTCTTGAGTTTCAGAGGTGAAGACACCCGTAAGAACTTCACTGATCACCTCTACACCGCCTTGACCGGAGCAGGACTTCGCACTTTCCGAGACGACGATGAACTTCCCAGAGGAGAAGACATCAAACCAGAGCTGGAGAGAGCCATCCAACTCTCGCGAAGCTCCGTCGTCGTGTTTTCTAAAGACTACGCCTCTTCCAAATGGTGCCTCGACGAGCTTTGCATGATCCTTCAACACAGAACAGCCTCCAATCATGTCGTCTTGCCGGTCTTCTACGACGTCGATCCATCTCACATCAGAACGCAGACGGGGAGCTTTGCGATCGCGTTTGCCAGACACGAGAAGAAGAGTTCTTTAGAAAAGTTGAATGCACGGAGGACAGCACTTGCGAAAGTTGCAGATCTTCCAGGAATGGTGCTGAAAAATGAAGCTGACGGGCACGAGTCAAGGTTCATTCAGAAAATTGTGAAAGTGATTGAGGAGAAATTACGTCGCCCACGATTGAGTGTTGCCTCTCATCTGATTGGAATTCATGATCGAGTCGAAAATATTAATTCATGGTTACAAGATGGATCATCTGGTGTTGGGGTATATTTAATTTATGGCATTGGGGGAATAGGAAAAACAACCATTGCACAAGTTGTTTATAATCTAAATTTTAGAAGATTTGAAGGAAGCAGTTTCCTTGAAAATATCAGAGAGACCTCACAAGGAACCATTGGCTTAATTCAACTCCAGAGACAACTTCTTTCTGATATTTTGGGTGGCAGAAAAGTGAAAATACAGAGTGTTAGTCAGGGAATAAGTAAAATTAGATATGCCATAAACTCTAAAAAAGTTCTTATTGTACTCGATGATGTGGATCATATGAGCCAATTCAATGCAATACTAAGGATGCGAGATTCGTTTCATCCTGGAAGTAAAATTATTGTAACAACTAGGGATGTGGGGATTCTAGAGTCTTGTCAAGCTGATAAGGTGCATAATGCTAAACCTTTAAATAGGGTTGAATCATTGGAGTTGTTTAGTAGGCATGCTTTTGGACAGGACCATCCCATTGAAGGTTACATGGAACTTTCACGATCAGTAGTACGCCACAGCGGTGGACTTCCATTAGCTCTTCAAACCTTGGGTTCCTCTCTCTCTGGGAAAAGTACAGATGTATGGGAAAGTGCATTAAAGAAATTGAGAGCTATTCCAAATAATGAAATCCTACATCAGCTGAGAATAAGCTACGACTCTTTACAAGATGACCATGACAAAGATCTGTTCCTCCATATTGCATGTTTCTTTATTGGAAAGGGCAAGGATGTCATTGTCAGGATACTAGATGAATGCGAGTTCTACACAATTGTTGGCATTCAAAATCTTATTGATAGGTGCTTGGTAACCTTAGACGAGAATAATGTAGTCAAGATGCATCAAATGATTCGTGACATGGGAAGAGGAATTGTTCGCCAAGAATCAAAGTATCCAGAGAAACGTAGTAGATTATGGCATCATAAGGATTCATTCAATGTACTGAAAGAAAAGAGTGGGTTCAAAAAAATTGAAGGTTTAGCTCTGAACATGCAAATGTACCTTGCGGACACCCACTCGAGCAATTCAAACAAGGTAACTCTGGAAACCAATGCATTTACAGGGATGCGCAGACTAAGATTACTCCAGCTTAGTCATGTACAACTTAATGGATGTTATGAAGAATTTCCTGATGGATTGAGATGGTTGTGTTGGGTTAAATTTCCTTTGGAGTCTATGCCCATTGATTTTCCTTTGGAGAGCCTGGTTGTTCTTGAATTGCAGTATAGCAGCTTGAAGCGATTTTGGAAGGGAACAAAAAGTCTTCCATCATTGAAAATCCTTGATCTGAGCCATTCTAGTGGCCTTTCTGAAACTGTTGATTTCTCAAATTTCCACAATTTAGAGAAATTGATCCTTGTAGATTGTGCTTGCCTTGTTGATGTCCATGAATCCATATGCACACTTCAGAAACTTGTTTACTTGAATATAAGAGATTGCAAAAATATCAGGAAGCTCCCAAAGAACCTTTCTAGGCTAAAATTACTTGAAACACTTATCATATCTGGTTGCTCAAATCTTAACGAGTTTCCAGTGGACATGAGGAATATGGAATCTCTGAAAAAGCTTGAAGCAGATGAAATTCCTTTTAATCAAGTACTAGCTACTACAGGGGAGGTCAAATCATTGGCCATACATAAAACTATACATAATTTTTGGGATTCTGTCCCCTGCACTTTAGTTAATTTGAGTCTTGCAGACTGCAATCTTTTTGAAGATGCATTTCCTAGGGATTTAAGTAACTTATCCTCATTGCAAAGATTGGATCTTAGCGGTAATCCAATTTGTAGCTTACCAGATTGTGTCCGAGATCTTAGAGGCCTCGATCATCTTGTATTTTGGAATTGTTTGAGTCTCAAATCGCTTGTAGCGCTACCAGGAGTGAGAGAATTGGATACTTCCTACTGTGAATCATTGGAAAAAATAACATTTCAGTCACTTTCTTGTGTTCCAAAGAACATAGTTTTTTTTGGTGATGAATTAAAAATAGTTGAGATTGAATATTGGTACAAGATGGAAGCAATTGGAAAAGTGGATGAAGAAATGATCAACCTGTTGGGTTTGTGCAACTTGGAGTCCATGGAAGCCATTAGGATGTTTGCGTTCCATATATACGAACTGGATGAGGTGACATTTGTTCTTCCCATCCAGGGAGTGCATGAATATGGTATATTCAGCACATATATTCCAGGAAACGAAACCGAGGTACCAGGAACATTCAGCTATAAAATTAAGGGGTCATCCTCACTATCTTTTACTGTGGTTTTAGTTCCTAATCTCAGGTTCCGAGGCTTCAATATCTTCTGTGTTTATTATGAAGGGAGGGCCCAGTCGTTTGACACTTATGACAATGTCCCACCAGTAATTATTCAAGTATGTAATAATAGCAAGGGTCTGAAGTGGATCTATGGACCGACATGCTACGGCATTCCAAGTGACAAAAAAGACGTGATATGGTTGAGCCATTGGAAGTTTGGGGTTCAACAATTGGAAGGGGGCGATGAAGTGGCTATTTCAGTACATGTGTTGAGAAGTCGTGGGATTGAGGTAAGAGAATGGGGAATTCAGATTGTGCATGAGGAAGAAGATAGCTTGAGTAGCCAACACGACACCAGCAGAGATCCTTGTTATGATCCAGAACATGATAATGAGGTGATTGGTAATATTGGTGGAGAATTGTCAGATTTATATGAGGTCACACCAGGAATATACTTTCTCTACGGTGGACCTTTTTTGTGGGATCACAGAGATACTTACAATAATTGGAAAACACGAGGTTATTACAATGACTTCACTGAGGACTCTGATAAAGAATCTGCAGAAAGAAGAAGGAAGCAGGGGGATGGGATGCTTGCGTCAACAGAAGAAGCTGAAGCAGAAACAGGCATCAATAACTTCTGCGGTTGTAAGATTCTTGTCATTCAAATGTTGATATCATTGGTGGAGATTTGTCAGAATATATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1207

Amino Acids

137.09

Weight (kDa)

5.92

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 24 - 191 1.3e-45 TIR domain
TIR_2 PF13676 26 - 137 1.1e-16 TIR domain
NB-ARC PF00931 205 - 375 1.9e-20 NB-ARC domain
WHD_ROQ1 PF23282 444 - 515 2.2e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_Zer-1 PF25013 639 - 739 9.3e-06 Zer-1-like, Leucine-rich repeats
LRR_14 PF23598 656 - 749 3.2e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
AatII GACGTC 1 cut(s) 360
Acc16I TGCGCA 1 cut(s) 1727
Acc65I GGTACC 1 cut(s) 2863
AccB1I GGYRCC 2 cut(s) 282, 2863
AccII CGCG 2 cut(s) 235, 404
AciI CCGC 6 cut(s) 48, 135, 1179, 1664, 2430, 3558
AcoI YGGCCR 1 cut(s) 2286
AcsI RAATTY 7 cut(s) 606, 733, 1781, 1817, 1987, 2238, 3219
AcuI CTGAAG 3 cut(s) 2048, 3074, 3549
AcyI GRCGYC 1 cut(s) 357
AfeI AGCGCT 1 cut(s) 2529
AfiI CCNNNNNNNGG 2 cut(s) 1139, 2807
AflIII ACRYGT 2 cut(s) 75, 3178
AjiI CACGTC 2 cut(s) 76, 3106
AjnI CCWGG 8 cut(s) 484, 991, 1860, 2533, 2805, 2845, 2866, 3358
AjuI GAANNNNNNNTTGG 2 cut(s) 2110, 2142
AleI CACNNNNGTG 1 cut(s) 1179
Alw26I GTCTC 4 cut(s) 162, 773, 811, 2516
Ama87I CYCGRG 1 cut(s) 1675
Aor51HI AGCGCT 1 cut(s) 2529
AoxI GGCC 4 cut(s) 1960, 2286, 2476, 2982
ApaI GGGCCC 1 cut(s) 2986
ApeKI GCWGC 2 cut(s) 29, 1887
ApoI RAATTY 7 cut(s) 606, 733, 1781, 1817, 1987, 2238, 3219
AseI ATTAAT 1 cut(s) 630
AsiSI GCGATCGC 1 cut(s) 402
Asp700I GAANNNNTTC 1 cut(s) 1782
Asp718I GGTACC 1 cut(s) 2863
AspA2I CCTAGG 1 cut(s) 2384
AspLEI GCGC 2 cut(s) 1728, 2530
AspS9I GGNCC 5 cut(s) 1126, 2982, 2983, 3068, 3383
AsuHPI GGTGA 5 cut(s) 107, 116, 2642, 2797, 3322
AvaI CYCGRG 1 cut(s) 1675
AvaII GGWCC 3 cut(s) 1126, 3068, 3383
AvrII CCTAGG 1 cut(s) 2384
BaeGI GKGCMC 2 cut(s) 519, 2986
BaeI ACNNNNGTAYC 2 cut(s) 2847, 2880
BalI TGGCCA 1 cut(s) 2288
BanI GGYRCC 2 cut(s) 282, 2863
BanII GRGCYC 1 cut(s) 2986
BauI CACGAG 3 cut(s) 416, 518, 3429
BbsI GAAGAC 4 cut(s) 105, 201, 340, 1913
BbvI GCAGC 2 cut(s) 16, 1899
BceAI ACGGC 1 cut(s) 3097
BciT130I CCWGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
BciVI GTATCC 3 cut(s) 1395, 1560, 2545
BclI TGATCA 2 cut(s) 121, 2703
BcoDI GTCTC 4 cut(s) 162, 773, 811, 2516
BfaI CTAG 7 cut(s) 1017, 1034, 1406, 1956, 2130, 2258, 2385
BfmI CTRYAG 2 cut(s) 2265, 3474
BfoI RGCGCY 1 cut(s) 2531
BfuI GTATCC 3 cut(s) 1395, 1560, 2545
BglII AGATCT 3 cut(s) 478, 1342, 2467
BisI GCNGC 2 cut(s) 30, 1888
BlnI CCTAGG 1 cut(s) 2384
BlsI GCNGC 2 cut(s) 31, 1889
BmcAI AGTACT 1 cut(s) 2256
Bme1390I CCNGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
Bme18I GGWCC 3 cut(s) 1126, 3068, 3383
BmeT110I CYCGRG 1 cut(s) 1675
BmgBI CACGTC 2 cut(s) 76, 3106
BmgT120I GGNCC 5 cut(s) 1126, 2982, 2983, 3068, 3383
BmiI GGNNCC 6 cut(s) 284, 793, 1213, 2865, 2942, 2984
BmrFI CCNGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
BmrI ACTGGG 1 cut(s) 2980
BmsI GCATC 8 cut(s) 963, 1485, 1507, 1585, 1713, 2365, 3495, 3552
BmuI ACTGGG 1 cut(s) 2980
BpiI GAAGAC 4 cut(s) 105, 201, 340, 1913
BpmI CTGGAG 3 cut(s) 233, 797, 1727
BpuEI CTTGAG 2 cut(s) 103, 3271
BsaBI GATNNNNATC 1 cut(s) 939
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 6 cut(s) 1206, 2384, 2736, 2806, 2859, 2944
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 1139, 2807
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 4 cut(s) 2189, 2781, 2986, 3017
Bse3DI GCAATG 2 cut(s) 708, 2408
Bse8I GATNNNNATC 1 cut(s) 939
BseBI CCWGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
BseDI CCNNGG 6 cut(s) 1206, 2384, 2736, 2806, 2859, 2944
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 2 cut(s) 1139, 2807
BseMI GCAATG 2 cut(s) 708, 2408
BseMII CTCAG 5 cut(s) 74, 1292, 1937, 2950, 3444
BseNI ACTGG 4 cut(s) 2189, 2781, 2986, 3017
BseRI GAGGAG 2 cut(s) 204, 572
BseSI GKGCMC 2 cut(s) 519, 2986
BseXI GCAGC 2 cut(s) 16, 1899
BsgI GTGCAG 1 cut(s) 2314
Bsh1236I CGCG 2 cut(s) 235, 404
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 4 cut(s) 1962, 2288, 2478, 2984
BshNI GGYRCC 2 cut(s) 282, 2863
BsiEI CGRYCG 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 1675
BsiSI CCGG 2 cut(s) 144, 344
BslFI GGGAC 2 cut(s) 2309, 2996
BslI CCNNNNNNNGG 2 cut(s) 1139, 2807
BsmAI GTCTC 4 cut(s) 162, 773, 811, 2516
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 2309, 2996
BsmI GAATGC 4 cut(s) 451, 1418, 1437, 3084
BsnI GGCC 4 cut(s) 1962, 2288, 2478, 2984
Bso31I GGTCTC 1 cut(s) 773
BsoBI CYCGRG 1 cut(s) 1675
Bsp120I GGGCCC 1 cut(s) 2982
Bsp1286I GDGCHC 2 cut(s) 519, 2986
Bsp1407I TGTACA 1 cut(s) 1756
Bsp19I CCATGG 1 cut(s) 2736
Bsp68I TCGCGA 1 cut(s) 235
BspACI CCGC 6 cut(s) 48, 135, 1179, 1664, 2430, 3558
BspANI GGCC 4 cut(s) 1962, 2288, 2478, 2984
BspCNI CTCAG 5 cut(s) 73, 1293, 1938, 2949, 3445
BspFNI CGCG 2 cut(s) 235, 404
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 6 cut(s) 284, 793, 1213, 2865, 2942, 2984
BspMAI CTGCAG 1 cut(s) 3478
BspQI GCTCTTC 1 cut(s) 1203
BspT107I GGYRCC 2 cut(s) 282, 2863
BspTNI GGTCTC 1 cut(s) 773
BsrDI GCAATG 2 cut(s) 708, 2408
BsrFI RCCGGY 1 cut(s) 343
BsrGI TGTACA 1 cut(s) 1756
BsrI ACTGG 4 cut(s) 2189, 2781, 2986, 3017
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 6 cut(s) 1206, 2384, 2736, 2806, 2859, 2944
BssNI GRCGYC 1 cut(s) 357
BssSI CACGAG 3 cut(s) 416, 518, 3429
BssT1I CCWWGG 3 cut(s) 1206, 2384, 2736
Bst2BI CACGAG 3 cut(s) 416, 518, 3429
Bst2UI CCWGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
Bst4CI ACNGT 4 cut(s) 1975, 2564, 2917, 3380
Bst6I CTCTTC 4 cut(s) 277, 419, 1203, 1516
BstACI GRCGYC 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 1756
BstC8I GCNNGC 3 cut(s) 1113, 2029, 3510
BstDSI CCRYGG 1 cut(s) 2736
BstEII GGTNACC 1 cut(s) 1465
BstFNI CGCG 2 cut(s) 235, 404
BstH2I RGCGCY 1 cut(s) 2531
BstHHI GCGC 2 cut(s) 1728, 2530
BstMAI GTCTC 4 cut(s) 162, 773, 811, 2516
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 3 cut(s) 473, 2527, 3255
BstNI CCWGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
BstNSI RCATGY 5 cut(s) 1115, 1365, 1651, 3078, 3182
BstPI GGTNACC 1 cut(s) 1465
BstSCI CCNGG 8 cut(s) 484, 991, 1860, 2533, 2805, 2845, 2866, 3358
BstSFI CTRYAG 2 cut(s) 2265, 3474
BstSLI GKGCMC 2 cut(s) 519, 2986
BstUI CGCG 2 cut(s) 235, 404
BstV1I GCAGC 2 cut(s) 16, 1899
BstV2I GAAGAC 4 cut(s) 105, 201, 340, 1913
BstX2I RGATCY 6 cut(s) 478, 1342, 2422, 2467, 3060, 3277
BstXI CCANNNNNNTGG 2 cut(s) 1181, 1958
BstYI RGATCY 6 cut(s) 478, 1342, 2422, 2467, 3060, 3277
BsuI GTATCC 3 cut(s) 1395, 1560, 2545
BsuRI GGCC 4 cut(s) 1962, 2288, 2478, 2984
BtgI CCRYGG 1 cut(s) 2736
BtgZI GCGATG 1 cut(s) 3171
BtrI CACGTC 2 cut(s) 76, 3106
BtsIMutI CAGTG 3 cut(s) 117, 2196, 3450
BtuMI TCGCGA 1 cut(s) 235
Cac8I GCNNGC 3 cut(s) 1113, 2029, 3510
CciI TCATGA 1 cut(s) 610
CfoI GCGC 2 cut(s) 1728, 2530
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 5 cut(s) 1126, 2982, 2983, 3068, 3383
CseI GACGC 1 cut(s) 3501
DraI TTTAAA 1 cut(s) 1077
EaeI YGGCCR 1 cut(s) 2286
Eam1104I CTCTTC 4 cut(s) 277, 419, 1203, 1516
EarI CTCTTC 4 cut(s) 277, 419, 1203, 1516
Eco130I CCWWGG 3 cut(s) 1206, 2384, 2736
Eco147I AGGCCT 1 cut(s) 2478
Eco24I GRGCYC 1 cut(s) 2986
Eco31I GGTCTC 1 cut(s) 773
Eco32I GATATC 2 cut(s) 17, 3591
Eco47I GGWCC 3 cut(s) 1126, 3068, 3383
Eco47III AGCGCT 1 cut(s) 2529
Eco57I CTGAAG 3 cut(s) 2048, 3074, 3549
Eco88I CYCGRG 1 cut(s) 1675
Eco91I GGTNACC 1 cut(s) 1465
EcoO109I RGGNCCY 1 cut(s) 2982
EcoO65I GGTNACC 1 cut(s) 1465
EcoRI GAATTC 2 cut(s) 606, 3219
EcoRII CCWGG 8 cut(s) 484, 991, 1860, 2533, 2805, 2845, 2866, 3358
EcoRV GATATC 2 cut(s) 17, 3591
EcoT14I CCWWGG 3 cut(s) 1206, 2384, 2736
EcoT22I ATGCAT 3 cut(s) 1500, 1714, 2380
EcoT38I GRGCYC 1 cut(s) 2986
ErhI CCWWGG 3 cut(s) 1206, 2384, 2736
Esp3I CGTCTC 1 cut(s) 162
FaqI GGGAC 2 cut(s) 2309, 2996
FauNDI CATATG 2 cut(s) 945, 2054
FbaI TGATCA 2 cut(s) 121, 2703
Fnu4HI GCNGC 2 cut(s) 30, 1888
FriOI GRGCYC 1 cut(s) 2986
Fsp4HI GCNGC 2 cut(s) 30, 1888
FspBI CTAG 7 cut(s) 1017, 1034, 1406, 1956, 2130, 2258, 2385
FspI TGCGCA 1 cut(s) 1727
GlaI GCGC 2 cut(s) 1727, 2529
GluI GCNGC 2 cut(s) 30, 1888
GsuI CTGGAG 3 cut(s) 233, 797, 1727
HaeII RGCGCY 1 cut(s) 2531
HaeIII GGCC 4 cut(s) 1962, 2288, 2478, 2984
HapII CCGG 2 cut(s) 144, 344
HgaI GACGC 1 cut(s) 3501
HhaI GCGC 2 cut(s) 1728, 2530
Hin1I GRCGYC 1 cut(s) 357
Hin6I GCGC 2 cut(s) 1726, 2528
HinP1I GCGC 2 cut(s) 1726, 2528
HincII GTYRAC 1 cut(s) 3516
HindII GTYRAC 1 cut(s) 3516
HindIII AAGCTT 1 cut(s) 2222
HpaII CCGG 2 cut(s) 144, 344
HphI GGTGA 5 cut(s) 107, 116, 2642, 2797, 3322
Hpy166II GTNNAC 5 cut(s) 1184, 2077, 2194, 3383, 3516
Hpy8I GTNNAC 5 cut(s) 1184, 2077, 2194, 3383, 3516
Hpy99I CGWCG 8 cut(s) 77, 176, 248, 251, 293, 359, 362, 573
HpyCH4III ACNGT 4 cut(s) 1975, 2564, 2917, 3380
HpyCH4IV ACGT 5 cut(s) 75, 357, 568, 1561, 3105
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 2527, 3255
HpySE526I ACGT 5 cut(s) 75, 357, 568, 1561, 3105
Hsp92I GRCGYC 1 cut(s) 357
HspAI GCGC 2 cut(s) 1726, 2528
KpnI GGTACC 1 cut(s) 2867
Ksp22I TGATCA 2 cut(s) 121, 2703
LguI GCTCTTC 1 cut(s) 1203
LmnI GCTCC 4 cut(s) 146, 245, 390, 2118
Lsp1109I GCAGC 2 cut(s) 16, 1899
LweI GCATC 8 cut(s) 963, 1485, 1507, 1585, 1713, 2365, 3495, 3552
MaeI CTAG 7 cut(s) 1017, 1034, 1406, 1956, 2130, 2258, 2385
MaeII ACGT 5 cut(s) 75, 357, 568, 1561, 3105
MfeI CAATTG 3 cut(s) 1428, 2679, 3143
MflI RGATCY 6 cut(s) 478, 1342, 2422, 2467, 3060, 3277
MhlI GDGCHC 2 cut(s) 519, 2986
MlsI TGGCCA 1 cut(s) 2288
MluNI TGGCCA 1 cut(s) 2288
MlyI GAGTC 9 cut(s) 530, 627, 1046, 1310, 1838, 2356, 2518, 2741, 3452
MmeI TCCRAC 1 cut(s) 250
Mox20I TGGCCA 1 cut(s) 2288
Mph1103I ATGCAT 3 cut(s) 1500, 1714, 2380
MroXI GAANNNNTTC 1 cut(s) 1782
MscI TGGCCA 1 cut(s) 2288
MslI CAYNNNNRTG 7 cut(s) 1179, 1652, 1956, 2750, 2820, 3303, 3581
Msp20I TGGCCA 1 cut(s) 2288
MspA1I CMGCKG 2 cut(s) 1179, 1300
MspI CCGG 2 cut(s) 144, 344
MspR9I CCNGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
MunI CAATTG 3 cut(s) 1428, 2679, 3143
Mva1269I GAATGC 4 cut(s) 451, 1418, 1437, 3084
MvaI CCWGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
MvnI CGCG 2 cut(s) 235, 404
MwoI GCNNNNNNNGC 3 cut(s) 473, 2527, 3255
NcoI CCATGG 1 cut(s) 2736
NdeI CATATG 2 cut(s) 945, 2054
NlaIV GGNNCC 6 cut(s) 284, 793, 1213, 2865, 2942, 2984
NmuCI GTSAC 5 cut(s) 1511, 2592, 2785, 3092, 3352
NruI TCGCGA 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 1727
NsiI ATGCAT 3 cut(s) 1500, 1714, 2380
NspI RCATGY 5 cut(s) 1115, 1365, 1651, 3078, 3182
OliI CACNNNNGTG 1 cut(s) 1179
PaeI GCATGC 1 cut(s) 1115
PaeR7I CTCGAG 1 cut(s) 1675
PagI TCATGA 1 cut(s) 610
PceI AGGCCT 1 cut(s) 2478
PciI ACATGT 1 cut(s) 3178
PciSI GCTCTTC 1 cut(s) 1203
PcsI WCGNNNNNNNCGW 2 cut(s) 163, 574
PctI GAATGC 4 cut(s) 451, 1418, 1437, 3084
PdmI GAANNNNTTC 1 cut(s) 1782
PflFI GACNNNGTC 1 cut(s) 3008
PfoI TCCNGGA 3 cut(s) 484, 991, 2845
PkrI GCNGC 2 cut(s) 31, 1889
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 9 cut(s) 529, 626, 1045, 1310, 1837, 2355, 2517, 2740, 3452
PpsI GAGTC 9 cut(s) 529, 626, 1045, 1310, 1837, 2355, 2517, 2740, 3452
PscI ACATGT 1 cut(s) 3178
PshBI ATTAAT 1 cut(s) 630
PsiI TTATAA 1 cut(s) 726
Psp6I CCWGG 8 cut(s) 484, 991, 1860, 2533, 2805, 2845, 2866, 3358
PspEI GGTNACC 1 cut(s) 1465
PspGI CCWGG 8 cut(s) 484, 991, 1860, 2533, 2805, 2845, 2866, 3358
PspN4I GGNNCC 6 cut(s) 284, 793, 1213, 2865, 2942, 2984
PspOMI GGGCCC 1 cut(s) 2982
PspPI GGNCC 5 cut(s) 1126, 2982, 2983, 3068, 3383
PspXI VCTCGAGB 1 cut(s) 1675
PstI CTGCAG 1 cut(s) 3478
PsuI RGATCY 6 cut(s) 478, 1342, 2422, 2467, 3060, 3277
PsyI GACNNNGTC 1 cut(s) 3008
PvuI CGATCG 1 cut(s) 402
PvuII CAGCTG 1 cut(s) 1300
RgaI GCGATCGC 1 cut(s) 402
RruI TCGCGA 1 cut(s) 235
RseI CAYNNNNRTG 7 cut(s) 1179, 1652, 1956, 2750, 2820, 3303, 3581
SapI GCTCTTC 1 cut(s) 1203
SatI GCNGC 2 cut(s) 30, 1888
Sau96I GGNCC 5 cut(s) 1126, 2982, 2983, 3068, 3383
ScaI AGTACT 1 cut(s) 2256
SchI GAGTC 9 cut(s) 530, 627, 1046, 1310, 1838, 2356, 2518, 2741, 3452
ScrFI CCNGG 8 cut(s) 486, 993, 1862, 2535, 2807, 2847, 2868, 3360
SduI GDGCHC 2 cut(s) 519, 2986
SfaAI GCGATCGC 1 cut(s) 402
SfaNI GCATC 8 cut(s) 963, 1485, 1507, 1585, 1713, 2365, 3495, 3552
SfcI CTRYAG 2 cut(s) 2265, 3474
Sfr274I CTCGAG 1 cut(s) 1675
SgfI GCGATCGC 1 cut(s) 402
SinI GGWCC 3 cut(s) 1126, 3068, 3383
SlaI CTCGAG 1 cut(s) 1675
SmiMI CAYNNNNRTG 7 cut(s) 1179, 1652, 1956, 2750, 2820, 3303, 3581
SmlI CTYRAG 3 cut(s) 82, 1675, 3250
SmoI CTYRAG 3 cut(s) 82, 1675, 3250
SphI GCATGC 1 cut(s) 1115
SseBI AGGCCT 1 cut(s) 2478
SsiI CCGC 6 cut(s) 48, 135, 1179, 1664, 2430, 3558
SspI AATATT 3 cut(s) 628, 2660, 3322
SspMI CTAG 7 cut(s) 1017, 1034, 1406, 1956, 2130, 2258, 2385
StuI AGGCCT 1 cut(s) 2478
StyD4I CCNGG 8 cut(s) 484, 991, 1860, 2533, 2805, 2845, 2866, 3358
StyI CCWWGG 3 cut(s) 1206, 2384, 2736
TaaI ACNGT 4 cut(s) 1975, 2564, 2917, 3380
TaiI ACGT 5 cut(s) 78, 360, 571, 1564, 3108
TaqI TCGA 8 cut(s) 9, 288, 360, 616, 621, 930, 1676, 2481
TaqII GACCGA 1 cut(s) 3085
TatI WGTACW 6 cut(s) 925, 1232, 1597, 1756, 2254, 3175
TscAI CASTG 3 cut(s) 124, 2196, 3457
TseFI GTSAC 5 cut(s) 1511, 2592, 2785, 3092, 3352
TseI GCWGC 2 cut(s) 29, 1887
Tsp45I GTSAC 5 cut(s) 1511, 2592, 2785, 3092, 3352
TspGWI ACGGA 2 cut(s) 232, 466
TspRI CASTG 3 cut(s) 124, 2196, 3457
Tth111I GACNNNGTC 1 cut(s) 3008
VpaK11BI GGWCC 3 cut(s) 1126, 3068, 3383
VspI ATTAAT 1 cut(s) 630
XapI RAATTY 7 cut(s) 606, 733, 1781, 1817, 1987, 2238, 3219
XbaI TCTAGA 1 cut(s) 1033
XceI RCATGY 5 cut(s) 1115, 1365, 1651, 3078, 3182
XcmI CCANNNNNNNNNTGG 1 cut(s) 3128
XhoI CTCGAG 1 cut(s) 1675
XmaJI CCTAGG 1 cut(s) 2384
XmnI GAANNNNTTC 1 cut(s) 1782
XspI CTAG 7 cut(s) 1017, 1034, 1406, 1956, 2130, 2258, 2385
ZraI GACGTC 1 cut(s) 358
ZrmI AGTACT 1 cut(s) 2256
Zsp2I ATGCAT 3 cut(s) 1500, 1714, 2380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.