TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 196 | 1.4e-49 | TIR domain |
| TIR_2 | PF13676 | 15 - 126 | 1.1e-15 | TIR domain |
| NB-ARC | PF00931 | 201 - 367 | 1.2e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 438 - 504 | 1.4e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 645 - 738 | 4.6e-08 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 771 - 826 | 3.5e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 182 |
| Acc36I | ACCTGC | 2 cut(s) | 302, 3316 |
| AccB1I | GGYRCC | 1 cut(s) | 249 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3062 |
| AccI | GTMKAC | 1 cut(s) | 1939 |
| AccII | CGCG | 1 cut(s) | 236 |
| AccIII | TCCGGA | 1 cut(s) | 242 |
| AciI | CCGC | 1 cut(s) | 313 |
| AcoI | YGGCCR | 2 cut(s) | 2367, 2839 |
| AcsI | RAATTY | 6 cut(s) | 591, 718, 1397, 1822, 2786, 2932 |
| AcuI | CTGAAG | 4 cut(s) | 115, 192, 1066, 1094 |
| AcyI | GRCGYC | 1 cut(s) | 560 |
| AfaI | GTAC | 5 cut(s) | 1674, 1737, 1801, 2005, 2636 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 360, 409, 439, 1118, 1203, 1978, 2513, 2774, 3062 |
| AflII | CTTAAG | 1 cut(s) | 565 |
| AflIII | ACRYGT | 1 cut(s) | 234 |
| AgeI | ACCGGT | 1 cut(s) | 328 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 235, 375 |
| AhlI | ACTAGT | 1 cut(s) | 2050 |
| AleI | CACNNNNGTG | 1 cut(s) | 1155 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2808, 2840 |
| Alw21I | GWGCWC | 3 cut(s) | 1152, 2150, 3212 |
| Alw26I | GTCTC | 4 cut(s) | 1797, 2041, 2447, 2606 |
| Alw44I | GTGCAC | 1 cut(s) | 1148 |
| Ama87I | CYCGRG | 1 cut(s) | 600 |
| Aor13HI | TCCGGA | 1 cut(s) | 242 |
| AoxI | GGCC | 7 cut(s) | 301, 507, 2250, 2367, 2611, 2839, 3034 |
| ApaLI | GTGCAC | 1 cut(s) | 1148 |
| ApeKI | GCWGC | 4 cut(s) | 178, 443, 741, 1866 |
| ApoI | RAATTY | 6 cut(s) | 591, 718, 1397, 1822, 2786, 2932 |
| AsiGI | ACCGGT | 1 cut(s) | 328 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 80, 595, 1079, 1251, 1761, 1825 |
| AspA2I | CCTAGG | 2 cut(s) | 863, 2357 |
| AspLEI | GCGC | 2 cut(s) | 183, 885 |
| AspS9I | GGNCC | 5 cut(s) | 302, 928, 1915, 2856, 3035 |
| AsuC2I | CCSGG | 1 cut(s) | 300 |
| AsuHPI | GGTGA | 6 cut(s) | 29, 76, 1274, 2437, 3139, 3286 |
| AvaI | CYCGRG | 1 cut(s) | 600 |
| AvaII | GGWCC | 3 cut(s) | 928, 1915, 2856 |
| AvrII | CCTAGG | 2 cut(s) | 863, 2357 |
| BaeGI | GKGCMC | 2 cut(s) | 504, 1152 |
| BalI | TGGCCA | 1 cut(s) | 2369 |
| BamHI | GGATCC | 4 cut(s) | 346, 1528, 2898, 3226 |
| BanI | GGYRCC | 1 cut(s) | 249 |
| BanII | GRGCYC | 1 cut(s) | 2631 |
| BauI | CACGAG | 1 cut(s) | 503 |
| BbsI | GAAGAC | 5 cut(s) | 72, 83, 296, 692, 1157 |
| Bbv12I | GWGCWC | 3 cut(s) | 1152, 2150, 3212 |
| BbvCI | CCTCAGC | 1 cut(s) | 2177 |
| BbvI | GCAGC | 4 cut(s) | 165, 455, 753, 1878 |
| BceAI | ACGGC | 1 cut(s) | 117 |
| BciVI | GTATCC | 1 cut(s) | 2775 |
| BclI | TGATCA | 1 cut(s) | 2673 |
| BcnI | CCSGG | 1 cut(s) | 300 |
| BcoDI | GTCTC | 4 cut(s) | 1797, 2041, 2447, 2606 |
| BcuI | ACTAGT | 1 cut(s) | 2050 |
| BfmI | CTRYAG | 2 cut(s) | 1861, 2536 |
| BfrI | CTTAAG | 1 cut(s) | 565 |
| BfuAI | ACCTGC | 2 cut(s) | 302, 3316 |
| BfuI | GTATCC | 1 cut(s) | 2775 |
| BglII | AGATCT | 1 cut(s) | 463 |
| BisI | GCNGC | 4 cut(s) | 179, 444, 742, 1867 |
| BlnI | CCTAGG | 2 cut(s) | 863, 2357 |
| BlsI | GCNGC | 4 cut(s) | 180, 445, 743, 1868 |
| Bme18I | GGWCC | 3 cut(s) | 928, 1915, 2856 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 235, 375 |
| BmeT110I | CYCGRG | 1 cut(s) | 600 |
| BmgT120I | GGNCC | 5 cut(s) | 302, 928, 1915, 2856, 3035 |
| BmiI | GGNNCC | 8 cut(s) | 251, 348, 1530, 2826, 2857, 2900, 3150, 3228 |
| BmrI | ACTGGG | 1 cut(s) | 3515 |
| BmuI | ACTGGG | 1 cut(s) | 3515 |
| BpiI | GAAGAC | 5 cut(s) | 72, 83, 296, 692, 1157 |
| BpmI | CTGGAG | 2 cut(s) | 1706, 2756 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2177 |
| BpuEI | CTTGAG | 5 cut(s) | 70, 170, 770, 1891, 2934 |
| BpuMI | CCSGG | 1 cut(s) | 300 |
| BsaBI | GATNNNNATC | 4 cut(s) | 345, 918, 2022, 2334 |
| BsaHI | GRCGYC | 1 cut(s) | 560 |
| BsaI | GGTCTC | 2 cut(s) | 1797, 2447 |
| BsaWI | WCCGGW | 3 cut(s) | 242, 328, 3399 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 360, 409, 439, 1118, 1203, 1978, 2513, 2774, 3062 |
| Bse118I | RCCGGY | 2 cut(s) | 328, 2963 |
| Bse1I | ACTGG | 4 cut(s) | 1750, 2168, 3114, 3521 |
| Bse3DI | GCAATG | 1 cut(s) | 693 |
| Bse8I | GATNNNNATC | 4 cut(s) | 345, 918, 2022, 2334 |
| BseAI | TCCGGA | 1 cut(s) | 242 |
| BseGI | GGATG | 7 cut(s) | 251, 967, 1397, 1555, 1707, 1754, 2187 |
| BseJI | GATNNNNATC | 4 cut(s) | 345, 918, 2022, 2334 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 360, 409, 439, 1118, 1203, 1978, 2513, 2774, 3062 |
| BseMI | GCAATG | 1 cut(s) | 693 |
| BseMII | CTCAG | 5 cut(s) | 136, 350, 1939, 2168, 2597 |
| BseNI | ACTGG | 4 cut(s) | 1750, 2168, 3114, 3521 |
| BseSI | GKGCMC | 2 cut(s) | 504, 1152 |
| BseXI | GCAGC | 4 cut(s) | 165, 455, 753, 1878 |
| BsgI | GTGCAG | 2 cut(s) | 1387, 1490 |
| Bsh1236I | CGCG | 1 cut(s) | 236 |
| BshFI | GGCC | 7 cut(s) | 303, 509, 2252, 2369, 2613, 2841, 3036 |
| BshNI | GGYRCC | 1 cut(s) | 249 |
| BshTI | ACCGGT | 1 cut(s) | 328 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1152, 2150, 3212 |
| BsiHKCI | CYCGRG | 1 cut(s) | 600 |
| BsiSI | CCGG | 6 cut(s) | 117, 243, 300, 329, 2964, 3400 |
| BslFI | GGGAC | 5 cut(s) | 337, 1897, 2790, 2869, 3262 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 360, 409, 439, 1118, 1203, 1978, 2513, 2774, 3062 |
| BsmAI | GTCTC | 4 cut(s) | 1797, 2041, 2447, 2606 |
| BsmFI | GGGAC | 5 cut(s) | 337, 1897, 2790, 2869, 3262 |
| BsmI | GAATGC | 1 cut(s) | 35 |
| BsnI | GGCC | 7 cut(s) | 303, 509, 2252, 2369, 2613, 2841, 3036 |
| Bso31I | GGTCTC | 2 cut(s) | 1797, 2447 |
| BsoBI | CYCGRG | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 5 cut(s) | 504, 1152, 2150, 2631, 3212 |
| Bsp13I | TCCGGA | 1 cut(s) | 242 |
| Bsp1407I | TGTACA | 1 cut(s) | 2003 |
| BspACI | CCGC | 1 cut(s) | 313 |
| BspANI | GGCC | 7 cut(s) | 303, 509, 2252, 2369, 2613, 2841, 3036 |
| BspCNI | CTCAG | 5 cut(s) | 135, 351, 1938, 2169, 2596 |
| BspEI | TCCGGA | 1 cut(s) | 242 |
| BspFNI | CGCG | 1 cut(s) | 236 |
| BspHI | TCATGA | 1 cut(s) | 1269 |
| BspLI | GGNNCC | 8 cut(s) | 251, 348, 1530, 2826, 2857, 2900, 3150, 3228 |
| BspMAI | CTGCAG | 1 cut(s) | 2540 |
| BspMI | ACCTGC | 2 cut(s) | 302, 3316 |
| BspQI | GCTCTTC | 2 cut(s) | 1085, 3200 |
| BspT107I | GGYRCC | 1 cut(s) | 249 |
| BspTI | CTTAAG | 1 cut(s) | 565 |
| BspTNI | GGTCTC | 2 cut(s) | 1797, 2447 |
| BsrDI | GCAATG | 1 cut(s) | 693 |
| BsrFI | RCCGGY | 2 cut(s) | 328, 2963 |
| BsrGI | TGTACA | 1 cut(s) | 2003 |
| BsrI | ACTGG | 4 cut(s) | 1750, 2168, 3114, 3521 |
| BssAI | RCCGGY | 2 cut(s) | 328, 2963 |
| BssNI | GRCGYC | 1 cut(s) | 560 |
| BssSI | CACGAG | 1 cut(s) | 503 |
| BssT1I | CCWWGG | 4 cut(s) | 863, 2357, 3152, 3541 |
| Bst2BI | CACGAG | 1 cut(s) | 503 |
| Bst4CI | ACNGT | 8 cut(s) | 535, 1408, 1799, 2477, 3050, 3133, 3424, 3464 |
| Bst6I | CTCTTC | 5 cut(s) | 1085, 1495, 3200, 3383, 3541 |
| BstACI | GRCGYC | 1 cut(s) | 560 |
| BstAFI | CTTAAG | 1 cut(s) | 565 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1551 |
| BstAUI | TGTACA | 1 cut(s) | 2003 |
| BstC8I | GCNNGC | 3 cut(s) | 1002, 1092, 2579 |
| BstEII | GGTNACC | 1 cut(s) | 1444 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1116 |
| BstF5I | GGATG | 7 cut(s) | 251, 967, 1397, 1555, 1707, 1754, 2187 |
| BstFNI | CGCG | 1 cut(s) | 236 |
| BstHHI | GCGC | 2 cut(s) | 183, 885 |
| BstMAI | GTCTC | 4 cut(s) | 1797, 2041, 2447, 2606 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 30, 467, 952, 1551, 2182, 2491, 2500, 3440 |
| BstNSI | RCATGY | 2 cut(s) | 1004, 1094 |
| BstPI | GGTNACC | 1 cut(s) | 1444 |
| BstSFI | CTRYAG | 2 cut(s) | 1861, 2536 |
| BstSLI | GKGCMC | 2 cut(s) | 504, 1152 |
| BstUI | CGCG | 1 cut(s) | 236 |
| BstV1I | GCAGC | 4 cut(s) | 165, 455, 753, 1878 |
| BstV2I | GAAGAC | 5 cut(s) | 72, 83, 296, 692, 1157 |
| BstX2I | RGATCY | 6 cut(s) | 346, 463, 1528, 2898, 3027, 3226 |
| BstYI | RGATCY | 6 cut(s) | 346, 463, 1528, 2898, 3027, 3226 |
| BsuI | GTATCC | 1 cut(s) | 2775 |
| BsuRI | GGCC | 7 cut(s) | 303, 509, 2252, 2369, 2613, 2841, 3036 |
| BtsCI | GGATG | 7 cut(s) | 251, 967, 1397, 1555, 1707, 1754, 2187 |
| BtsI | GCAGTG | 3 cut(s) | 446, 948, 3176 |
| BtsIMutI | CAGTG | 9 cut(s) | 446, 948, 1070, 1413, 1743, 1795, 1953, 2381, 3176 |
| BveI | ACCTGC | 2 cut(s) | 302, 3316 |
| Cac8I | GCNNGC | 3 cut(s) | 1002, 1092, 2579 |
| CciI | TCATGA | 1 cut(s) | 1269 |
| CfoI | GCGC | 2 cut(s) | 183, 885 |
| Cfr10I | RCCGGY | 2 cut(s) | 328, 2963 |
| Cfr13I | GGNCC | 5 cut(s) | 302, 928, 1915, 2856, 3035 |
| CseI | GACGC | 2 cut(s) | 225, 568 |
| CsiI | ACCWGGT | 1 cut(s) | 2820 |
| Csp6I | GTAC | 5 cut(s) | 1673, 1736, 1800, 2004, 2635 |
| CspAI | ACCGGT | 1 cut(s) | 328 |
| CviQI | GTAC | 5 cut(s) | 1673, 1736, 1800, 2004, 2635 |
| DraI | TTTAAA | 1 cut(s) | 717 |
| DriI | GACNNNNNGTC | 2 cut(s) | 235, 375 |
| EaeI | YGGCCR | 2 cut(s) | 2367, 2839 |
| Eam1104I | CTCTTC | 5 cut(s) | 1085, 1495, 3200, 3383, 3541 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 235, 375 |
| EarI | CTCTTC | 5 cut(s) | 1085, 1495, 3200, 3383, 3541 |
| Eco130I | CCWWGG | 4 cut(s) | 863, 2357, 3152, 3541 |
| Eco147I | AGGCCT | 1 cut(s) | 2613 |
| Eco24I | GRGCYC | 1 cut(s) | 2631 |
| Eco31I | GGTCTC | 2 cut(s) | 1797, 2447 |
| Eco47I | GGWCC | 3 cut(s) | 928, 1915, 2856 |
| Eco57I | CTGAAG | 4 cut(s) | 115, 192, 1066, 1094 |
| Eco88I | CYCGRG | 1 cut(s) | 600 |
| Eco91I | GGTNACC | 1 cut(s) | 1444 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1116 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1915, 2856 |
| EcoO65I | GGTNACC | 1 cut(s) | 1444 |
| EcoRI | GAATTC | 2 cut(s) | 591, 1397 |
| EcoT14I | CCWWGG | 4 cut(s) | 863, 2357, 3152, 3541 |
| EcoT22I | ATGCAT | 3 cut(s) | 1479, 1707, 2418 |
| EcoT38I | GRGCYC | 1 cut(s) | 2631 |
| ErhI | CCWWGG | 4 cut(s) | 863, 2357, 3152, 3541 |
| FaqI | GGGAC | 5 cut(s) | 337, 1897, 2790, 2869, 3262 |
| FauNDI | CATATG | 1 cut(s) | 620 |
| FbaI | TGATCA | 1 cut(s) | 2673 |
| FblI | GTMKAC | 1 cut(s) | 1939 |
| Fnu4HI | GCNGC | 4 cut(s) | 179, 444, 742, 1867 |
| FokI | GGATG | 7 cut(s) | 258, 954, 1404, 1542, 1714, 1761, 2194 |
| FriOI | GRGCYC | 1 cut(s) | 2631 |
| Fsp4HI | GCNGC | 4 cut(s) | 179, 444, 742, 1867 |
| FspI | TGCGCA | 1 cut(s) | 182 |
| GlaI | GCGC | 2 cut(s) | 182, 884 |
| GluI | GCNGC | 4 cut(s) | 179, 444, 742, 1867 |
| GsuI | CTGGAG | 2 cut(s) | 1706, 2756 |
| HaeIII | GGCC | 7 cut(s) | 303, 509, 2252, 2369, 2613, 2841, 3036 |
| HapII | CCGG | 6 cut(s) | 117, 243, 300, 329, 2964, 3400 |
| HgaI | GACGC | 2 cut(s) | 225, 568 |
| HhaI | GCGC | 2 cut(s) | 183, 885 |
| Hin1I | GRCGYC | 1 cut(s) | 560 |
| Hin6I | GCGC | 2 cut(s) | 181, 883 |
| HinP1I | GCGC | 2 cut(s) | 181, 883 |
| HincII | GTYRAC | 3 cut(s) | 430, 1940, 2971 |
| HindII | GTYRAC | 3 cut(s) | 430, 1940, 2971 |
| HindIII | AAGCTT | 3 cut(s) | 2008, 2090, 3182 |
| HpaI | GTTAAC | 1 cut(s) | 2971 |
| HpaII | CCGG | 6 cut(s) | 117, 243, 300, 329, 2964, 3400 |
| HphI | GGTGA | 6 cut(s) | 29, 76, 1274, 2437, 3139, 3286 |
| Hpy166II | GTNNAC | 7 cut(s) | 430, 709, 1150, 1940, 2056, 2530, 2971 |
| Hpy8I | GTNNAC | 7 cut(s) | 430, 709, 1150, 1940, 2056, 2530, 2971 |
| Hpy99I | CGWCG | 1 cut(s) | 241 |
| HpyCH4III | ACNGT | 8 cut(s) | 535, 1408, 1799, 2477, 3050, 3133, 3424, 3464 |
| HpyCH4IV | ACGT | 2 cut(s) | 1540, 2884 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 30, 467, 952, 1551, 2182, 2491, 2500, 3440 |
| HpySE526I | ACGT | 2 cut(s) | 1540, 2884 |
| Hsp92I | GRCGYC | 1 cut(s) | 560 |
| HspAI | GCGC | 2 cut(s) | 181, 883 |
| Kpn2I | TCCGGA | 1 cut(s) | 242 |
| Ksp22I | TGATCA | 1 cut(s) | 2673 |
| KspAI | GTTAAC | 1 cut(s) | 2971 |
| LguI | GCTCTTC | 2 cut(s) | 1085, 3200 |
| LmnI | GCTCC | 5 cut(s) | 580, 772, 1725, 3448, 3551 |
| Lsp1109I | GCAGC | 4 cut(s) | 165, 455, 753, 1878 |
| MabI | ACCWGGT | 1 cut(s) | 2820 |
| MaeII | ACGT | 2 cut(s) | 1540, 2884 |
| MflI | RGATCY | 6 cut(s) | 346, 463, 1528, 2898, 3027, 3226 |
| MhlI | GDGCHC | 5 cut(s) | 504, 1152, 2150, 2631, 3212 |
| MlsI | TGGCCA | 1 cut(s) | 2369 |
| MluI | ACGCGT | 1 cut(s) | 234 |
| MluNI | TGGCCA | 1 cut(s) | 2369 |
| MlyI | GAGTC | 7 cut(s) | 114, 1061, 1289, 1529, 1559, 2772, 3362 |
| MmeI | TCCRAC | 6 cut(s) | 87, 536, 568, 1357, 2496, 3078 |
| Mox20I | TGGCCA | 1 cut(s) | 2369 |
| Mph1103I | ATGCAT | 3 cut(s) | 1479, 1707, 2418 |
| MroI | TCCGGA | 1 cut(s) | 242 |
| MroXI | GAANNNNTTC | 6 cut(s) | 80, 595, 1079, 1251, 1761, 1825 |
| MscI | TGGCCA | 1 cut(s) | 2369 |
| MslI | CAYNNNNRTG | 4 cut(s) | 315, 1155, 2108, 2572 |
| Msp20I | TGGCCA | 1 cut(s) | 2369 |
| MspCI | CTTAAG | 1 cut(s) | 565 |
| MspI | CCGG | 6 cut(s) | 117, 243, 300, 329, 2964, 3400 |
| Mva1269I | GAATGC | 1 cut(s) | 35 |
| MvnI | CGCG | 1 cut(s) | 236 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 30, 467, 952, 1551, 2182, 2491, 2500, 3440 |
| NciI | CCSGG | 1 cut(s) | 300 |
| NdeI | CATATG | 1 cut(s) | 620 |
| NlaIV | GGNNCC | 8 cut(s) | 251, 348, 1530, 2826, 2857, 2900, 3150, 3228 |
| NmuCI | GTSAC | 3 cut(s) | 1490, 2236, 3127 |
| NsbI | TGCGCA | 1 cut(s) | 182 |
| NsiI | ATGCAT | 3 cut(s) | 1479, 1707, 2418 |
| NspI | RCATGY | 2 cut(s) | 1004, 1094 |
| OliI | CACNNNNGTG | 1 cut(s) | 1155 |
| PaeI | GCATGC | 2 cut(s) | 1004, 1094 |
| PagI | TCATGA | 1 cut(s) | 1269 |
| PceI | AGGCCT | 1 cut(s) | 2613 |
| PciSI | GCTCTTC | 2 cut(s) | 1085, 3200 |
| PctI | GAATGC | 1 cut(s) | 35 |
| PdmI | GAANNNNTTC | 6 cut(s) | 80, 595, 1079, 1251, 1761, 1825 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3062 |
| PfoI | TCCNGGA | 4 cut(s) | 273, 970, 2812, 2827 |
| PinAI | ACCGGT | 1 cut(s) | 328 |
| PkrI | GCNGC | 4 cut(s) | 180, 445, 743, 1868 |
| PleI | GAGTC | 7 cut(s) | 114, 1061, 1289, 1528, 1559, 2772, 3362 |
| PpsI | GAGTC | 7 cut(s) | 114, 1061, 1289, 1528, 1559, 2772, 3362 |
| PpuMI | RGGWCCY | 2 cut(s) | 1915, 2856 |
| Psp5II | RGGWCCY | 2 cut(s) | 1915, 2856 |
| PspEI | GGTNACC | 1 cut(s) | 1444 |
| PspN4I | GGNNCC | 8 cut(s) | 251, 348, 1530, 2826, 2857, 2900, 3150, 3228 |
| PspPI | GGNCC | 5 cut(s) | 302, 928, 1915, 2856, 3035 |
| PspPPI | RGGWCCY | 2 cut(s) | 1915, 2856 |
| PstI | CTGCAG | 1 cut(s) | 2540 |
| PsuI | RGATCY | 6 cut(s) | 346, 463, 1528, 2898, 3027, 3226 |
| RsaI | GTAC | 5 cut(s) | 1674, 1737, 1801, 2005, 2636 |
| RsaNI | GTAC | 5 cut(s) | 1673, 1736, 1800, 2004, 2635 |
| RseI | CAYNNNNRTG | 4 cut(s) | 315, 1155, 2108, 2572 |
| SalI | GTCGAC | 1 cut(s) | 1938 |
| SapI | GCTCTTC | 2 cut(s) | 1085, 3200 |
| SatI | GCNGC | 4 cut(s) | 179, 444, 742, 1867 |
| Sau96I | GGNCC | 5 cut(s) | 302, 928, 1915, 2856, 3035 |
| SchI | GAGTC | 7 cut(s) | 114, 1061, 1289, 1529, 1559, 2772, 3362 |
| SduI | GDGCHC | 5 cut(s) | 504, 1152, 2150, 2631, 3212 |
| SexAI | ACCWGGT | 1 cut(s) | 2820 |
| SfcI | CTRYAG | 2 cut(s) | 1861, 2536 |
| SinI | GGWCC | 3 cut(s) | 928, 1915, 2856 |
| SmiI | ATTTAAAT | 1 cut(s) | 717 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 315, 1155, 2108, 2572 |
| SmlI | CTYRAG | 6 cut(s) | 49, 149, 565, 749, 1870, 2949 |
| SmoI | CTYRAG | 6 cut(s) | 49, 149, 565, 749, 1870, 2949 |
| SpeI | ACTAGT | 1 cut(s) | 2050 |
| SphI | GCATGC | 2 cut(s) | 1004, 1094 |
| SseBI | AGGCCT | 1 cut(s) | 2613 |
| SsiI | CCGC | 1 cut(s) | 313 |
| StuI | AGGCCT | 1 cut(s) | 2613 |
| StyI | CCWWGG | 4 cut(s) | 863, 2357, 3152, 3541 |
| SwaI | ATTTAAAT | 1 cut(s) | 717 |
| TaaI | ACNGT | 8 cut(s) | 535, 1408, 1799, 2477, 3050, 3133, 3424, 3464 |
| TaiI | ACGT | 2 cut(s) | 1543, 2887 |
| TaqI | TCGA | 6 cut(s) | 519, 1062, 1202, 1939, 2454, 3304 |
| TatI | WGTACW | 4 cut(s) | 1672, 1735, 1799, 2003 |
| TscAI | CASTG | 9 cut(s) | 453, 948, 1077, 1413, 1750, 1802, 1960, 2388, 3176 |
| TseFI | GTSAC | 3 cut(s) | 1490, 2236, 3127 |
| TseI | GCWGC | 4 cut(s) | 178, 443, 741, 1866 |
| Tsp45I | GTSAC | 3 cut(s) | 1490, 2236, 3127 |
| TspGWI | ACGGA | 4 cut(s) | 339, 941, 1117, 3380 |
| TspRI | CASTG | 9 cut(s) | 453, 948, 1077, 1413, 1750, 1802, 1960, 2388, 3176 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3062 |
| Vha464I | CTTAAG | 1 cut(s) | 565 |
| VneI | GTGCAC | 1 cut(s) | 1148 |
| VpaK11BI | GGWCC | 3 cut(s) | 928, 1915, 2856 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1116 |
| XapI | RAATTY | 6 cut(s) | 591, 718, 1397, 1822, 2786, 2932 |
| XbaI | TCTAGA | 4 cut(s) | 200, 1516, 2065, 2303 |
| XceI | RCATGY | 2 cut(s) | 1004, 1094 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2849 |
| XmaJI | CCTAGG | 2 cut(s) | 863, 2357 |
| XmiI | GTMKAC | 1 cut(s) | 1939 |
| XmnI | GAANNNNTTC | 6 cut(s) | 80, 595, 1079, 1251, 1761, 1825 |
| Zsp2I | ATGCAT | 3 cut(s) | 1479, 1707, 2418 |