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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 575, 3282 |
| AccB1I | GGYRCC | 1 cut(s) | 29 |
| AccI | GTMKAC | 3 cut(s) | 1021, 2930, 3872 |
| AciI | CCGC | 3 cut(s) | 508, 1533, 3072 |
| AclWI | GGATC | 7 cut(s) | 10, 995, 1488, 3027, 3040, 3350, 3554 |
| AcoI | YGGCCR | 3 cut(s) | 279, 1474, 2609 |
| AcsI | RAATTY | 8 cut(s) | 10, 230, 861, 1176, 2165, 2589, 3234, 3366 |
| AcuI | CTGAAG | 2 cut(s) | 1533, 3356 |
| AcyI | GRCGYC | 2 cut(s) | 30, 3657 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 26, 520, 1049, 1493, 2703, 3107, 3377, 3676 |
| AflII | CTTAAG | 1 cut(s) | 1456 |
| AflIII | ACRYGT | 3 cut(s) | 830, 2101, 2472 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1592, 1624 |
| Alw21I | GWGCWC | 4 cut(s) | 827, 1455, 3522, 3792 |
| Alw26I | GTCTC | 5 cut(s) | 687, 2236, 2410, 2568, 3776 |
| Alw44I | GTGCAC | 1 cut(s) | 823 |
| AlwI | GGATC | 7 cut(s) | 10, 995, 1488, 3027, 3040, 3350, 3554 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3112, 3803 |
| Ama87I | CYCGRG | 1 cut(s) | 969 |
| AoxI | GGCC | 6 cut(s) | 279, 1474, 2308, 2609, 3163, 3349 |
| ApaLI | GTGCAC | 1 cut(s) | 823 |
| ApeKI | GCWGC | 7 cut(s) | 510, 794, 1039, 1110, 2514, 3752, 3800 |
| ApoI | RAATTY | 8 cut(s) | 10, 230, 861, 1176, 2165, 2589, 3234, 3366 |
| AseI | ATTAAT | 1 cut(s) | 188 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 108, 1626, 1700, 1881, 2358 |
| AspA2I | CCTAGG | 1 cut(s) | 218 |
| AspLEI | GCGC | 1 cut(s) | 32 |
| AspS9I | GGNCC | 3 cut(s) | 1294, 1424, 3350 |
| AsuC2I | CCSGG | 2 cut(s) | 2816, 3615 |
| AsuHPI | GGTGA | 5 cut(s) | 226, 1649, 1831, 2325, 2759 |
| AsuII | TTCGAA | 1 cut(s) | 1944 |
| AsuNHI | GCTAGC | 1 cut(s) | 3755 |
| AvaI | CYCGRG | 1 cut(s) | 969 |
| AvaII | GGWCC | 2 cut(s) | 1294, 1424 |
| AvrII | CCTAGG | 1 cut(s) | 218 |
| AxyI | CCTNAGG | 1 cut(s) | 1322 |
| BaeGI | GKGCMC | 1 cut(s) | 827 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3166, 3199 |
| BalI | TGGCCA | 3 cut(s) | 281, 1476, 2611 |
| BamHI | GGATCC | 1 cut(s) | 3032 |
| BanI | GGYRCC | 1 cut(s) | 29 |
| BanII | GRGCYC | 1 cut(s) | 1455 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3175, 3207 |
| BauI | CACGAG | 1 cut(s) | 2420 |
| BbsI | GAAGAC | 5 cut(s) | 1061, 1543, 2288, 3183, 3699 |
| Bbv12I | GWGCWC | 4 cut(s) | 827, 1455, 3522, 3792 |
| BbvI | GCAGC | 7 cut(s) | 497, 781, 1026, 1122, 2501, 3739, 3787 |
| BceAI | ACGGC | 2 cut(s) | 43, 1168 |
| BciVI | GTATCC | 2 cut(s) | 317, 3589 |
| BclI | TGATCA | 2 cut(s) | 1684, 3003 |
| BcnI | CCSGG | 2 cut(s) | 2816, 3615 |
| BcoDI | GTCTC | 5 cut(s) | 687, 2236, 2410, 2568, 3776 |
| BfaI | CTAG | 9 cut(s) | 219, 1371, 1619, 1760, 2348, 2411, 2963, 3474, 3756 |
| BfmI | CTRYAG | 2 cut(s) | 3766, 3825 |
| BfoI | RGCGCY | 1 cut(s) | 33 |
| BfrI | CTTAAG | 1 cut(s) | 1456 |
| BfuI | GTATCC | 2 cut(s) | 317, 3589 |
| BisI | GCNGC | 8 cut(s) | 508, 511, 795, 1040, 1111, 2515, 3753, 3801 |
| BlnI | CCTAGG | 1 cut(s) | 218 |
| BlsI | GCNGC | 8 cut(s) | 509, 512, 796, 1041, 1112, 2516, 3754, 3802 |
| Bme18I | GGWCC | 2 cut(s) | 1294, 1424 |
| BmeT110I | CYCGRG | 1 cut(s) | 969 |
| BmgT120I | GGNCC | 3 cut(s) | 1294, 1424, 3350 |
| BmiI | GGNNCC | 5 cut(s) | 31, 1435, 1584, 3034, 3159 |
| BmtI | GCTAGC | 1 cut(s) | 3759 |
| BpiI | GAAGAC | 5 cut(s) | 1061, 1543, 2288, 3183, 3699 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1587, 2919 |
| Bpu14I | TTCGAA | 1 cut(s) | 1944 |
| BpuEI | CTTGAG | 4 cut(s) | 955, 2260, 2653, 3473 |
| BpuMI | CCSGG | 2 cut(s) | 2816, 3615 |
| Bsa29I | ATCGAT | 1 cut(s) | 256 |
| BsaAI | YACGTR | 3 cut(s) | 706, 2003, 3600 |
| BsaBI | GATNNNNATC | 2 cut(s) | 815, 2887 |
| BsaHI | GRCGYC | 2 cut(s) | 30, 3657 |
| BsaI | GGTCTC | 1 cut(s) | 687 |
| BsaJI | CCNNGG | 8 cut(s) | 19, 218, 1867, 1904, 2322, 3106, 3628, 3675 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 3432, 3462, 3865 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 26, 520, 1049, 1493, 2703, 3107, 3377, 3676 |
| Bse1I | ACTGG | 5 cut(s) | 957, 2115, 2537, 2960, 3166 |
| Bse21I | CCTNAGG | 1 cut(s) | 1322 |
| Bse3DI | GCAATG | 2 cut(s) | 1062, 3660 |
| Bse8I | GATNNNNATC | 2 cut(s) | 815, 2887 |
| BseCI | ATCGAT | 1 cut(s) | 256 |
| BseDI | CCNNGG | 8 cut(s) | 19, 218, 1867, 1904, 2322, 3106, 3628, 3675 |
| BseJI | GATNNNNATC | 2 cut(s) | 815, 2887 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 26, 520, 1049, 1493, 2703, 3107, 3377, 3676 |
| BseMI | GCAATG | 2 cut(s) | 1062, 3660 |
| BseMII | CTCAG | 3 cut(s) | 1313, 1816, 2910 |
| BseNI | ACTGG | 5 cut(s) | 957, 2115, 2537, 2960, 3166 |
| BseRI | GAGGAG | 1 cut(s) | 3782 |
| BseSI | GKGCMC | 1 cut(s) | 827 |
| BseXI | GCAGC | 7 cut(s) | 497, 781, 1026, 1122, 2501, 3739, 3787 |
| BshFI | GGCC | 6 cut(s) | 281, 1476, 2310, 2611, 3165, 3351 |
| BshNI | GGYRCC | 1 cut(s) | 29 |
| BshVI | ATCGAT | 1 cut(s) | 256 |
| BsiHKAI | GWGCWC | 4 cut(s) | 827, 1455, 3522, 3792 |
| BsiHKCI | CYCGRG | 1 cut(s) | 969 |
| BsiSI | CCGG | 3 cut(s) | 2815, 2880, 3614 |
| BslFI | GGGAC | 4 cut(s) | 1884, 2007, 3123, 3194 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 26, 520, 1049, 1493, 2703, 3107, 3377, 3676 |
| BsmAI | GTCTC | 5 cut(s) | 687, 2236, 2410, 2568, 3776 |
| BsmFI | GGGAC | 4 cut(s) | 1884, 2007, 3123, 3194 |
| BsmI | GAATGC | 1 cut(s) | 1791 |
| BsnI | GGCC | 6 cut(s) | 281, 1476, 2310, 2611, 3165, 3351 |
| Bso31I | GGTCTC | 1 cut(s) | 687 |
| BsoBI | CYCGRG | 1 cut(s) | 969 |
| Bsp119I | TTCGAA | 1 cut(s) | 1944 |
| Bsp1286I | GDGCHC | 4 cut(s) | 827, 1455, 3522, 3792 |
| Bsp1407I | TGTACA | 1 cut(s) | 2104 |
| Bsp19I | CCATGG | 2 cut(s) | 2322, 3675 |
| BspACI | CCGC | 3 cut(s) | 508, 1533, 3072 |
| BspANI | GGCC | 6 cut(s) | 281, 1476, 2310, 2611, 3165, 3351 |
| BspCNI | CTCAG | 3 cut(s) | 1314, 1815, 2911 |
| BspDI | ATCGAT | 1 cut(s) | 256 |
| BspHI | TCATGA | 3 cut(s) | 1644, 1687, 2392 |
| BspLI | GGNNCC | 5 cut(s) | 31, 1435, 1584, 3034, 3159 |
| BspMAI | CTGCAG | 1 cut(s) | 3770 |
| BspOI | GCTAGC | 1 cut(s) | 3759 |
| BspPI | GGATC | 7 cut(s) | 10, 995, 1488, 3027, 3040, 3350, 3554 |
| BspQI | GCTCTTC | 1 cut(s) | 1243 |
| BspT104I | TTCGAA | 1 cut(s) | 1944 |
| BspT107I | GGYRCC | 1 cut(s) | 29 |
| BspTI | CTTAAG | 1 cut(s) | 1456 |
| BspTNI | GGTCTC | 1 cut(s) | 687 |
| BsrDI | GCAATG | 2 cut(s) | 1062, 3660 |
| BsrGI | TGTACA | 1 cut(s) | 2104 |
| BsrI | ACTGG | 5 cut(s) | 957, 2115, 2537, 2960, 3166 |
| BssECI | CCNNGG | 8 cut(s) | 19, 218, 1867, 1904, 2322, 3106, 3628, 3675 |
| BssNAI | GTATAC | 1 cut(s) | 1022 |
| BssNI | GRCGYC | 2 cut(s) | 30, 3657 |
| BssSI | CACGAG | 1 cut(s) | 2420 |
| BssT1I | CCWWGG | 4 cut(s) | 218, 2322, 3628, 3675 |
| Bst1107I | GTATAC | 1 cut(s) | 1022 |
| Bst2BI | CACGAG | 1 cut(s) | 2420 |
| Bst4CI | ACNGT | 6 cut(s) | 783, 1411, 2021, 2928, 3063, 3114 |
| Bst6I | CTCTTC | 3 cut(s) | 492, 1243, 1261 |
| BstACI | GRCGYC | 2 cut(s) | 30, 3657 |
| BstAFI | CTTAAG | 1 cut(s) | 1456 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3765 |
| BstAUI | TGTACA | 1 cut(s) | 2104 |
| BstBAI | YACGTR | 3 cut(s) | 706, 2003, 3600 |
| BstBI | TTCGAA | 1 cut(s) | 1944 |
| BstC8I | GCNNGC | 8 cut(s) | 1463, 1467, 1974, 2159, 3042, 3757, 3805, 3822 |
| BstDSI | CCRYGG | 2 cut(s) | 2322, 3675 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1047, 2701 |
| BstH2I | RGCGCY | 1 cut(s) | 33 |
| BstHHI | GCGC | 1 cut(s) | 32 |
| BstMAI | GTCTC | 5 cut(s) | 687, 2236, 2410, 2568, 3776 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 2836, 3171, 3263, 3671, 3765 |
| BstNSI | RCATGY | 4 cut(s) | 834, 1469, 2105, 2476 |
| BstSFI | CTRYAG | 2 cut(s) | 3766, 3825 |
| BstSLI | GKGCMC | 1 cut(s) | 827 |
| BstV1I | GCAGC | 7 cut(s) | 497, 781, 1026, 1122, 2501, 3739, 3787 |
| BstV2I | GAAGAC | 5 cut(s) | 1061, 1543, 2288, 3183, 3699 |
| BstX2I | RGATCY | 4 cut(s) | 1000, 3032, 3342, 3559 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2306 |
| BstYI | RGATCY | 4 cut(s) | 1000, 3032, 3342, 3559 |
| BstZ17I | GTATAC | 1 cut(s) | 1022 |
| Bsu15I | ATCGAT | 1 cut(s) | 256 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1322 |
| BsuI | GTATCC | 2 cut(s) | 317, 3589 |
| BsuRI | GGCC | 6 cut(s) | 281, 1476, 2310, 2611, 3165, 3351 |
| BsuTUI | ATCGAT | 1 cut(s) | 256 |
| BtgI | CCRYGG | 2 cut(s) | 2322, 3675 |
| BtgZI | GCGATG | 1 cut(s) | 990 |
| BtsIMutI | CAGTG | 3 cut(s) | 779, 2544, 3059 |
| Cac8I | GCNNGC | 8 cut(s) | 1463, 1467, 1974, 2159, 3042, 3757, 3805, 3822 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3112, 3803 |
| CciI | TCATGA | 3 cut(s) | 1644, 1687, 2392 |
| CfoI | GCGC | 1 cut(s) | 32 |
| Cfr13I | GGNCC | 3 cut(s) | 1294, 1424, 3350 |
| ClaI | ATCGAT | 1 cut(s) | 256 |
| CseI | GACGC | 3 cut(s) | 3665, 3786, 3851 |
| DinI | GGCGCC | 1 cut(s) | 31 |
| DraI | TTTAAA | 3 cut(s) | 169, 610, 1194 |
| EaeI | YGGCCR | 3 cut(s) | 279, 1474, 2609 |
| Eam1104I | CTCTTC | 3 cut(s) | 492, 1243, 1261 |
| EarI | CTCTTC | 3 cut(s) | 492, 1243, 1261 |
| Ecl136II | GAGCTC | 1 cut(s) | 1453 |
| Eco130I | CCWWGG | 4 cut(s) | 218, 2322, 3628, 3675 |
| Eco24I | GRGCYC | 1 cut(s) | 1455 |
| Eco31I | GGTCTC | 1 cut(s) | 687 |
| Eco32I | GATATC | 3 cut(s) | 86, 817, 3198 |
| Eco47I | GGWCC | 2 cut(s) | 1294, 1424 |
| Eco53kI | GAGCTC | 1 cut(s) | 1453 |
| Eco57I | CTGAAG | 2 cut(s) | 1533, 3356 |
| Eco81I | CCTNAGG | 1 cut(s) | 1322 |
| Eco88I | CYCGRG | 1 cut(s) | 969 |
| EcoICRI | GAGCTC | 1 cut(s) | 1453 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1047, 2701 |
| EcoRI | GAATTC | 4 cut(s) | 230, 2589, 3234, 3366 |
| EcoRV | GATATC | 3 cut(s) | 86, 817, 3198 |
| EcoT14I | CCWWGG | 4 cut(s) | 218, 2322, 3628, 3675 |
| EcoT22I | ATGCAT | 3 cut(s) | 183, 672, 1851 |
| EcoT38I | GRGCYC | 1 cut(s) | 1455 |
| EgeI | GGCGCC | 1 cut(s) | 31 |
| EheI | GGCGCC | 1 cut(s) | 31 |
| ErhI | CCWWGG | 4 cut(s) | 218, 2322, 3628, 3675 |
| FaqI | GGGAC | 4 cut(s) | 1884, 2007, 3123, 3194 |
| FauNDI | CATATG | 3 cut(s) | 672, 1897, 3387 |
| FbaI | TGATCA | 2 cut(s) | 1684, 3003 |
| FblI | GTMKAC | 3 cut(s) | 1021, 2930, 3872 |
| Fnu4HI | GCNGC | 8 cut(s) | 508, 511, 795, 1040, 1111, 2515, 3753, 3801 |
| FriOI | GRGCYC | 1 cut(s) | 1455 |
| Fsp4HI | GCNGC | 8 cut(s) | 508, 511, 795, 1040, 1111, 2515, 3753, 3801 |
| FspBI | CTAG | 9 cut(s) | 219, 1371, 1619, 1760, 2348, 2411, 2963, 3474, 3756 |
| GlaI | GCGC | 1 cut(s) | 31 |
| GluI | GCNGC | 8 cut(s) | 508, 511, 795, 1040, 1111, 2515, 3753, 3801 |
| HaeII | RGCGCY | 1 cut(s) | 33 |
| HaeIII | GGCC | 6 cut(s) | 281, 1476, 2310, 2611, 3165, 3351 |
| HapII | CCGG | 3 cut(s) | 2815, 2880, 3614 |
| HgaI | GACGC | 3 cut(s) | 3665, 3786, 3851 |
| HhaI | GCGC | 1 cut(s) | 32 |
| Hin1I | GRCGYC | 2 cut(s) | 30, 3657 |
| Hin6I | GCGC | 1 cut(s) | 30 |
| HinP1I | GCGC | 1 cut(s) | 30 |
| HindIII | AAGCTT | 1 cut(s) | 1258 |
| HpaII | CCGG | 3 cut(s) | 2815, 2880, 3614 |
| HphI | GGTGA | 5 cut(s) | 226, 1649, 1831, 2325, 2759 |
| Hpy99I | CGWCG | 1 cut(s) | 3867 |
| HpyCH4III | ACNGT | 6 cut(s) | 783, 1411, 2021, 2928, 3063, 3114 |
| HpyCH4IV | ACGT | 4 cut(s) | 705, 2002, 3137, 3599 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 2836, 3171, 3263, 3671, 3765 |
| HpySE526I | ACGT | 4 cut(s) | 705, 2002, 3137, 3599 |
| Hsp92I | GRCGYC | 2 cut(s) | 30, 3657 |
| HspAI | GCGC | 1 cut(s) | 30 |
| KasI | GGCGCC | 1 cut(s) | 29 |
| Ksp22I | TGATCA | 2 cut(s) | 1684, 3003 |
| LguI | GCTCTTC | 1 cut(s) | 1243 |
| LmnI | GCTCC | 4 cut(s) | 1450, 2654, 3271, 3795 |
| Lsp1109I | GCAGC | 7 cut(s) | 497, 781, 1026, 1122, 2501, 3739, 3787 |
| MaeI | CTAG | 9 cut(s) | 219, 1371, 1619, 1760, 2348, 2411, 2963, 3474, 3756 |
| MaeII | ACGT | 4 cut(s) | 705, 2002, 3137, 3599 |
| MaeIII | GTNAC | 6 cut(s) | 293, 706, 993, 1819, 1862, 3317 |
| MfeI | CAATTG | 3 cut(s) | 377, 1824, 1977 |
| MflI | RGATCY | 4 cut(s) | 1000, 3032, 3342, 3559 |
| MhlI | GDGCHC | 4 cut(s) | 827, 1455, 3522, 3792 |
| MlsI | TGGCCA | 3 cut(s) | 281, 1476, 2611 |
| MluNI | TGGCCA | 3 cut(s) | 281, 1476, 2611 |
| Mly113I | GGCGCC | 1 cut(s) | 30 |
| MlyI | GAGTC | 7 cut(s) | 884, 981, 2412, 2570, 3106, 3478, 3674 |
| MmeI | TCCRAC | 3 cut(s) | 300, 1402, 2159 |
| Mox20I | TGGCCA | 3 cut(s) | 281, 1476, 2611 |
| Mph1103I | ATGCAT | 3 cut(s) | 183, 672, 1851 |
| MroXI | GAANNNNTTC | 5 cut(s) | 108, 1626, 1700, 1881, 2358 |
| MscI | TGGCCA | 3 cut(s) | 281, 1476, 2611 |
| MslI | CAYNNNNRTG | 3 cut(s) | 619, 2304, 3050 |
| Msp20I | TGGCCA | 3 cut(s) | 281, 1476, 2611 |
| MspA1I | CMGCKG | 3 cut(s) | 510, 1533, 3800 |
| MspCI | CTTAAG | 1 cut(s) | 1456 |
| MspI | CCGG | 3 cut(s) | 2815, 2880, 3614 |
| MunI | CAATTG | 3 cut(s) | 377, 1824, 1977 |
| Mva1269I | GAATGC | 1 cut(s) | 1791 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 2836, 3171, 3263, 3671, 3765 |
| NarI | GGCGCC | 1 cut(s) | 30 |
| NciI | CCSGG | 2 cut(s) | 2816, 3615 |
| NcoI | CCATGG | 2 cut(s) | 2322, 3675 |
| NdeI | CATATG | 3 cut(s) | 672, 1897, 3387 |
| NheI | GCTAGC | 1 cut(s) | 3755 |
| NlaIV | GGNNCC | 5 cut(s) | 31, 1435, 1584, 3034, 3159 |
| NmeAIII | GCCGAG | 1 cut(s) | 1913 |
| NmuCI | GTSAC | 2 cut(s) | 1819, 1862 |
| NsiI | ATGCAT | 3 cut(s) | 183, 672, 1851 |
| NspI | RCATGY | 4 cut(s) | 834, 1469, 2105, 2476 |
| NspV | TTCGAA | 1 cut(s) | 1944 |
| PaeI | GCATGC | 1 cut(s) | 1469 |
| PaeR7I | CTCGAG | 1 cut(s) | 969 |
| PagI | TCATGA | 3 cut(s) | 1644, 1687, 2392 |
| PciI | ACATGT | 3 cut(s) | 830, 2101, 2472 |
| PciSI | GCTCTTC | 1 cut(s) | 1243 |
| PctI | GAATGC | 1 cut(s) | 1791 |
| PdmI | GAANNNNTTC | 5 cut(s) | 108, 1626, 1700, 1881, 2358 |
| PfoI | TCCNGGA | 3 cut(s) | 1345, 2814, 3370 |
| PkrI | GCNGC | 8 cut(s) | 509, 512, 796, 1041, 1112, 2516, 3754, 3802 |
| PleI | GAGTC | 7 cut(s) | 883, 980, 2412, 2569, 3105, 3477, 3674 |
| PluTI | GGCGCC | 1 cut(s) | 33 |
| PpsI | GAGTC | 7 cut(s) | 883, 980, 2412, 2569, 3105, 3477, 3674 |
| Ppu21I | YACGTR | 3 cut(s) | 706, 2003, 3600 |
| PscI | ACATGT | 3 cut(s) | 830, 2101, 2472 |
| PshBI | ATTAAT | 1 cut(s) | 188 |
| PsiI | TTATAA | 2 cut(s) | 575, 3282 |
| Psp124BI | GAGCTC | 1 cut(s) | 1455 |
| PspN4I | GGNNCC | 5 cut(s) | 31, 1435, 1584, 3034, 3159 |
| PspPI | GGNCC | 3 cut(s) | 1294, 1424, 3350 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2620, 2652 |
| PstI | CTGCAG | 1 cut(s) | 3770 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3112, 3803 |
| PsuI | RGATCY | 4 cut(s) | 1000, 3032, 3342, 3559 |
| PvuII | CAGCTG | 1 cut(s) | 3800 |
| RseI | CAYNNNNRTG | 3 cut(s) | 619, 2304, 3050 |
| SacI | GAGCTC | 1 cut(s) | 1455 |
| SapI | GCTCTTC | 1 cut(s) | 1243 |
| SatI | GCNGC | 8 cut(s) | 508, 511, 795, 1040, 1111, 2515, 3753, 3801 |
| Sau96I | GGNCC | 3 cut(s) | 1294, 1424, 3350 |
| SchI | GAGTC | 7 cut(s) | 884, 981, 2412, 2570, 3106, 3478, 3674 |
| SduI | GDGCHC | 4 cut(s) | 827, 1455, 3522, 3792 |
| SfcI | CTRYAG | 2 cut(s) | 3766, 3825 |
| SfoI | GGCGCC | 1 cut(s) | 31 |
| Sfr274I | CTCGAG | 1 cut(s) | 969 |
| SfuI | TTCGAA | 1 cut(s) | 1944 |
| SinI | GGWCC | 2 cut(s) | 1294, 1424 |
| SlaI | CTCGAG | 1 cut(s) | 969 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 619, 2304, 3050 |
| SmlI | CTYRAG | 6 cut(s) | 934, 969, 1456, 2239, 2632, 3488 |
| SmoI | CTYRAG | 6 cut(s) | 934, 969, 1456, 2239, 2632, 3488 |
| SphI | GCATGC | 1 cut(s) | 1469 |
| SsiI | CCGC | 3 cut(s) | 508, 1533, 3072 |
| SspDI | GGCGCC | 1 cut(s) | 29 |
| SspI | AATATT | 3 cut(s) | 247, 1508, 3429 |
| SspMI | CTAG | 9 cut(s) | 219, 1371, 1619, 1760, 2348, 2411, 2963, 3474, 3756 |
| SstI | GAGCTC | 1 cut(s) | 1455 |
| StyI | CCWWGG | 4 cut(s) | 218, 2322, 3628, 3675 |
| TaaI | ACNGT | 6 cut(s) | 783, 1411, 2021, 2928, 3063, 3114 |
| TaiI | ACGT | 4 cut(s) | 708, 2005, 3140, 3602 |
| TatI | WGTACW | 5 cut(s) | 1604, 2104, 2424, 2857, 3460 |
| TauI | GCSGC | 1 cut(s) | 510 |
| TscAI | CASTG | 3 cut(s) | 786, 2544, 3066 |
| TseFI | GTSAC | 2 cut(s) | 1819, 1862 |
| TseI | GCWGC | 7 cut(s) | 510, 794, 1039, 1110, 2514, 3752, 3800 |
| Tsp45I | GTSAC | 2 cut(s) | 1819, 1862 |
| TspGWI | ACGGA | 1 cut(s) | 2130 |
| TspRI | CASTG | 3 cut(s) | 786, 2544, 3066 |
| Vha464I | CTTAAG | 1 cut(s) | 1456 |
| VneI | GTGCAC | 1 cut(s) | 823 |
| VpaK11BI | GGWCC | 2 cut(s) | 1294, 1424 |
| VspI | ATTAAT | 1 cut(s) | 188 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1047, 2701 |
| XapI | RAATTY | 8 cut(s) | 10, 230, 861, 1176, 2165, 2589, 3234, 3366 |
| XbaI | TCTAGA | 1 cut(s) | 2347 |
| XceI | RCATGY | 4 cut(s) | 834, 1469, 2105, 2476 |
| XhoI | CTCGAG | 1 cut(s) | 969 |
| XmaJI | CCTAGG | 1 cut(s) | 218 |
| XmiI | GTMKAC | 3 cut(s) | 1021, 2930, 3872 |
| XmnI | GAANNNNTTC | 5 cut(s) | 108, 1626, 1700, 1881, 2358 |
| XspI | CTAG | 9 cut(s) | 219, 1371, 1619, 1760, 2348, 2411, 2963, 3474, 3756 |
| Zsp2I | ATGCAT | 3 cut(s) | 183, 672, 1851 |