Rmu_sc0007310.1_g000003

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007310.1
OG0000036
Physical Location & Seq
Reverse (-)
8949 .. 15184
6236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007310.1_g000003.1.cds

Sequence Viewer

Length: 3501 bp
atggctgttgttagaggtgaaggctgtgaatgcagttacgatgtgttcttgagtttccgaggcgaagacactcggaagaccttcaccgatcatctctacacggcgttggacaacgccggactcagcaccttcagagatgatgatgagcttgagagaggtcaagatattaaggtagagctgcgcagagcaattcagcaatccagaacttcagttattgtattttccaaagactacgcgtcgtccggatggtgccttgacgagcttgtgatgatcctggaacgcaagaggaagacctgccccggcccagaccaccgccatgtcgttttaccggtgttctatgatgtggatccgtcccaactgaggaatcagacgggaagtcttgcaaaagcatttgccacgcaccagaagaaggaagcgttgaacaaggtcaaccgatggagggcagcactgcaagaggttgcagatctagcaggaatggtgttaaagaatcaagctgatgggcacgaggccaagttcatcgaaaaaattgttacagttattgctgacaagctaagtcggacgcccttaagtgttgctccaaatctggttggaattcattctcgggttgaacgcattaacatatggttacaagatgaatcaactaatgttggcatacttgtaatttatggaattggtgggatagggaagacgaccattgcaaaattagtttacaatttaaattttgaaaagtttgatggaagcagctttcttgagaatataagacaattttcggagctacctaatggcttagttttaatacaaacaaaacttctttgtgatattgggaaaaaggtggaaatacacagcgttagtgagggaatacctaggattgaaaaggtcttgcgctctaaaagagttcttcttgttcttgatgatgtggatcatacggaccaactagatgcagtgcttatgatgcaagataagtttcatccaggaagtagaatcatcataacaactaggcatgcgaggttgttgaatgttgatagagctattgaggtctataaccttgaaactttggatttcgatgactcactgaagctcttcagttggcatgctttcggacggaactatcctaataaaggttacatggaacattcaaaaaggctagtgcaccatagtggaggtcttccattagctctaaaagtttttggttcttccctatcgaggcaaagtatagatgtatgggaaagtgcattagagaaattggaagtaattccaaatggtgaaatcatgaacaaactcaaaataagctatgactctttacaagacagccatgacaaagatttattcctccatattgcttgtttctttgttggtaaggacagagattacattgttggaatactaaatggatgtgaattctgcacagtggttggtattcagaatcttattgataggtgcttggtaaccattgatggagataacaaggtgcagatgcatcaaatgattcgtgacatgggaagaggaattgttcttctagagtcaaaggatcctgggaaacgtagcagattatgccatccaaaagactctttcaaagtattggcagaaaacaaaggaacaaaaaggattgaaggtcttgtcttggatatgcgtaagcaccctgcatacactctttcaagggaatcaaatgctgtactcttggaaaccaaaggatttgtagggatgcataatctaagactgctccagcttagtcatgtactactcactggatgctatgaagaacttccatcaggactaagatggttgtgttggtctcactgtactttggattctatacccagaaatttttctttggattacttggttgttcttgaaatgcactatagcagcttgagaaaagttgggacgggaaggaagtattttccatcattgaaggtccttgatctcagctattcctgtcgacttagtgaaatcactgacttctccctattccctaatctggaaagactaattcttaaagattgtacaaacttggttgatgttcatcaatctattgaaaagctagagagactagtttacttgaatctagagggttgcaaaactattgagaagcttccagaaaacatttctatgctgaaatccctggaaacacttgtaatatctgggtgctcaaatcttaatcactttccagtaaagctgaggatgctagaatctctaaaagtgcttcaaacaaatgatattccaataagtttattggtcactactattgaggccagatcatgcacaagaacaagcatagatattttttgggcttctttaccctctagattagtagatttaagtcttgtagattgcaatctttctgataatgtttttcctagggctttggccaacctatcctcactgaaaagattaaatctaagccataatccaatgcatagcctaccaagttgcatcagaggtctcaccaggctcgatcaactttctttctccaactgtaagaagctcaaatggcttgtagggctaccaagagtaggagaattgatggtggacaactgcagatcattgaaaaaaatatcatcttattcattgtcatgcctgcctcagtcgttaggtttttgtctcaatgaaggcctagttgagattgagccctggtacaagttagaacccctcggaaaagttgatgaggaaatgatcaaccttttgggcttgactgacttgaaatccgaggaaagaataaggttgcacaccatagatgagcagaaagttgattctggcacaatgtatcccctccagggactctatgaatttgggatattccacacttttcttcctggaaaccaggttccaggacacttcggccacaaaagtaatgggacctcaatatcttttactttacctctacgtcctaatggtaggatccgaggcttgaatgtcttttctgtctatgaaaattcagatgatgtttctcaagtcatctatgccggtgttaacttacctaatccaatcataactaaagtcagtaataagagcaagggtctgaaatggatctttggcccaacatactacggtattccagataatggaaaagatatgatttggttaagccattggaagttggagaatcaactggaaggtaacgataaggtgactgtttcagtatttatggaaccttggcttcggctaaagcagtgtggggtcaagcttgtgtatgagcaaaagaggaagagcacccccaacaccgcggatccttattcatgtgtcattgggacagatttttcagaagaacaggaggtgatgctaggaacatacttcctctgccctcgacctgcttcaatggacaacttagatttgtgtaggtcagtttggttcaataagctcattacggactctgatgaagaaacaggtggtaatggatgttggctgtggtacacgaattcgatctttctatcttttgtgctcaagctggtgcaaaacgtgtacatgatcctagcattgactggtgagaaagggtataattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1166

Amino Acids

132.09

Weight (kDa)

7.33

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 182
Acc36I ACCTGC 2 cut(s) 302, 3316
AccB1I GGYRCC 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 3062
AccI GTMKAC 1 cut(s) 1939
AccII CGCG 2 cut(s) 236, 3224
AccIII TCCGGA 1 cut(s) 242
AciI CCGC 3 cut(s) 313, 3222, 3224
AcoI YGGCCR 2 cut(s) 2367, 2839
AcsI RAATTY 7 cut(s) 591, 718, 1397, 1822, 2786, 2932, 3415
AcuI CTGAAG 4 cut(s) 115, 192, 1066, 1094
AcyI GRCGYC 1 cut(s) 560
AfaI GTAC 7 cut(s) 1674, 1737, 1801, 2005, 2636, 3410, 3461
AfiI CCNNNNNNNGG 9 cut(s) 360, 409, 439, 1118, 1203, 1978, 2513, 2774, 3062
AflII CTTAAG 1 cut(s) 565
AflIII ACRYGT 2 cut(s) 234, 3456
AgeI ACCGGT 1 cut(s) 328
AhdI GACNNNNNGTC 2 cut(s) 235, 375
AhlI ACTAGT 1 cut(s) 2050
AleI CACNNNNGTG 1 cut(s) 1155
AloI GAACNNNNNNTCC 2 cut(s) 2808, 2840
Alw21I GWGCWC 4 cut(s) 1152, 2150, 3212, 3441
Alw26I GTCTC 4 cut(s) 1797, 2041, 2447, 2606
Alw44I GTGCAC 1 cut(s) 1148
Ama87I CYCGRG 1 cut(s) 600
Aor13HI TCCGGA 1 cut(s) 242
AoxI GGCC 7 cut(s) 301, 507, 2250, 2367, 2611, 2839, 3034
ApaLI GTGCAC 1 cut(s) 1148
ApeKI GCWGC 4 cut(s) 178, 443, 741, 1866
ApoI RAATTY 7 cut(s) 591, 718, 1397, 1822, 2786, 2932, 3415
AsiGI ACCGGT 1 cut(s) 328
Asp700I GAANNNNTTC 6 cut(s) 80, 595, 1079, 1251, 1761, 1825
AspA2I CCTAGG 2 cut(s) 863, 2357
AspLEI GCGC 2 cut(s) 183, 885
AspS9I GGNCC 5 cut(s) 302, 928, 1915, 2856, 3035
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 7 cut(s) 29, 76, 1274, 2437, 3139, 3286, 3494
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 3 cut(s) 928, 1915, 2856
AvrII CCTAGG 2 cut(s) 863, 2357
BaeGI GKGCMC 2 cut(s) 504, 1152
BalI TGGCCA 1 cut(s) 2369
BamHI GGATCC 4 cut(s) 346, 1528, 2898, 3226
BanI GGYRCC 1 cut(s) 249
BanII GRGCYC 1 cut(s) 2631
BauI CACGAG 1 cut(s) 503
BbsI GAAGAC 5 cut(s) 72, 83, 296, 692, 1157
Bbv12I GWGCWC 4 cut(s) 1152, 2150, 3212, 3441
BbvCI CCTCAGC 1 cut(s) 2177
BbvI GCAGC 4 cut(s) 165, 455, 753, 1878
BceAI ACGGC 1 cut(s) 117
BciVI GTATCC 1 cut(s) 2775
BclI TGATCA 1 cut(s) 2673
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 4 cut(s) 1797, 2041, 2447, 2606
BcuI ACTAGT 1 cut(s) 2050
BfmI CTRYAG 2 cut(s) 1861, 2536
BfrI CTTAAG 1 cut(s) 565
BfuAI ACCTGC 2 cut(s) 302, 3316
BfuI GTATCC 1 cut(s) 2775
BglII AGATCT 1 cut(s) 463
BisI GCNGC 4 cut(s) 179, 444, 742, 1867
BlnI CCTAGG 2 cut(s) 863, 2357
BlsI GCNGC 4 cut(s) 180, 445, 743, 1868
Bme18I GGWCC 3 cut(s) 928, 1915, 2856
BmeRI GACNNNNNGTC 2 cut(s) 235, 375
BmeT110I CYCGRG 1 cut(s) 600
BmgT120I GGNCC 5 cut(s) 302, 928, 1915, 2856, 3035
BmiI GGNNCC 8 cut(s) 251, 348, 1530, 2826, 2857, 2900, 3150, 3228
BmsI GCATC 9 cut(s) 928, 942, 1464, 1486, 1692, 1739, 2172, 2442, 3267
BpiI GAAGAC 5 cut(s) 72, 83, 296, 692, 1157
BpmI CTGGAG 2 cut(s) 1706, 2756
Bpu10I CCTNAGC 1 cut(s) 2177
BpuEI CTTGAG 6 cut(s) 70, 170, 770, 1891, 2934, 3425
BpuMI CCSGG 1 cut(s) 300
BsaBI GATNNNNATC 4 cut(s) 345, 918, 2022, 2334
BsaHI GRCGYC 1 cut(s) 560
BsaI GGTCTC 2 cut(s) 1797, 2447
BsaWI WCCGGW 2 cut(s) 242, 328
Bsc4I CCNNNNNNNGG 9 cut(s) 360, 409, 439, 1118, 1203, 1978, 2513, 2774, 3062
Bse118I RCCGGY 2 cut(s) 328, 2963
Bse1I ACTGG 4 cut(s) 1750, 2168, 3114, 3484
Bse3DI GCAATG 1 cut(s) 693
Bse8I GATNNNNATC 4 cut(s) 345, 918, 2022, 2334
BseAI TCCGGA 1 cut(s) 242
BseGI GGATG 8 cut(s) 251, 967, 1397, 1555, 1707, 1754, 2187, 3401
BseJI GATNNNNATC 4 cut(s) 345, 918, 2022, 2334
BseLI CCNNNNNNNGG 9 cut(s) 360, 409, 439, 1118, 1203, 1978, 2513, 2774, 3062
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 5 cut(s) 136, 350, 1939, 2168, 2597
BseNI ACTGG 4 cut(s) 1750, 2168, 3114, 3484
BseSI GKGCMC 2 cut(s) 504, 1152
BseXI GCAGC 4 cut(s) 165, 455, 753, 1878
BsgI GTGCAG 2 cut(s) 1387, 1490
Bsh1236I CGCG 2 cut(s) 236, 3224
BshFI GGCC 7 cut(s) 303, 509, 2252, 2369, 2613, 2841, 3036
BshNI GGYRCC 1 cut(s) 249
BshTI ACCGGT 1 cut(s) 328
BsiHKAI GWGCWC 4 cut(s) 1152, 2150, 3212, 3441
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 5 cut(s) 117, 243, 300, 329, 2964
BslFI GGGAC 5 cut(s) 337, 1897, 2790, 2869, 3262
BslI CCNNNNNNNGG 9 cut(s) 360, 409, 439, 1118, 1203, 1978, 2513, 2774, 3062
BsmAI GTCTC 4 cut(s) 1797, 2041, 2447, 2606
BsmFI GGGAC 5 cut(s) 337, 1897, 2790, 2869, 3262
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 7 cut(s) 303, 509, 2252, 2369, 2613, 2841, 3036
Bso31I GGTCTC 2 cut(s) 1797, 2447
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 6 cut(s) 504, 1152, 2150, 2631, 3212, 3441
Bsp13I TCCGGA 1 cut(s) 242
Bsp1407I TGTACA 2 cut(s) 2003, 3459
BspACI CCGC 3 cut(s) 313, 3222, 3224
BspANI GGCC 7 cut(s) 303, 509, 2252, 2369, 2613, 2841, 3036
BspCNI CTCAG 5 cut(s) 135, 351, 1938, 2169, 2596
BspEI TCCGGA 1 cut(s) 242
BspFNI CGCG 2 cut(s) 236, 3224
BspHI TCATGA 1 cut(s) 1269
BspLI GGNNCC 8 cut(s) 251, 348, 1530, 2826, 2857, 2900, 3150, 3228
BspMAI CTGCAG 1 cut(s) 2540
BspMI ACCTGC 2 cut(s) 302, 3316
BspQI GCTCTTC 2 cut(s) 1085, 3200
BspT107I GGYRCC 1 cut(s) 249
BspTI CTTAAG 1 cut(s) 565
BspTNI GGTCTC 2 cut(s) 1797, 2447
BsrDI GCAATG 1 cut(s) 693
BsrFI RCCGGY 2 cut(s) 328, 2963
BsrGI TGTACA 2 cut(s) 2003, 3459
BsrI ACTGG 4 cut(s) 1750, 2168, 3114, 3484
BssAI RCCGGY 2 cut(s) 328, 2963
BssNI GRCGYC 1 cut(s) 560
BssSI CACGAG 1 cut(s) 503
BssT1I CCWWGG 3 cut(s) 863, 2357, 3152
Bst2BI CACGAG 1 cut(s) 503
Bst4CI ACNGT 6 cut(s) 535, 1408, 1799, 2477, 3050, 3133
Bst6I CTCTTC 3 cut(s) 1085, 1495, 3200
BstACI GRCGYC 1 cut(s) 560
BstAFI CTTAAG 1 cut(s) 565
BstAPI GCANNNNNTGC 1 cut(s) 1551
BstAUI TGTACA 2 cut(s) 2003, 3459
BstC8I GCNNGC 3 cut(s) 1002, 1092, 2579
BstDSI CCRYGG 1 cut(s) 3222
BstEII GGTNACC 1 cut(s) 1444
BstENI CCTNNNNNAGG 1 cut(s) 1116
BstF5I GGATG 8 cut(s) 251, 967, 1397, 1555, 1707, 1754, 2187, 3401
BstFNI CGCG 2 cut(s) 236, 3224
BstHHI GCGC 2 cut(s) 183, 885
BstMAI GTCTC 4 cut(s) 1797, 2041, 2447, 2606
BstMWI GCNNNNNNNGC 7 cut(s) 30, 467, 952, 1551, 2182, 2491, 2500
BstNSI RCATGY 2 cut(s) 1004, 1094
BstPI GGTNACC 1 cut(s) 1444
BstSFI CTRYAG 2 cut(s) 1861, 2536
BstSLI GKGCMC 2 cut(s) 504, 1152
BstUI CGCG 2 cut(s) 236, 3224
BstV1I GCAGC 4 cut(s) 165, 455, 753, 1878
BstV2I GAAGAC 5 cut(s) 72, 83, 296, 692, 1157
BstX2I RGATCY 6 cut(s) 346, 463, 1528, 2898, 3027, 3226
BstYI RGATCY 6 cut(s) 346, 463, 1528, 2898, 3027, 3226
BsuI GTATCC 1 cut(s) 2775
BsuRI GGCC 7 cut(s) 303, 509, 2252, 2369, 2613, 2841, 3036
BtgI CCRYGG 1 cut(s) 3222
BtsCI GGATG 8 cut(s) 251, 967, 1397, 1555, 1707, 1754, 2187, 3401
BtsI GCAGTG 3 cut(s) 446, 948, 3176
BtsIMutI CAGTG 9 cut(s) 446, 948, 1070, 1413, 1743, 1795, 1953, 2381, 3176
BveI ACCTGC 2 cut(s) 302, 3316
Cac8I GCNNGC 3 cut(s) 1002, 1092, 2579
CciI TCATGA 1 cut(s) 1269
CfoI GCGC 2 cut(s) 183, 885
Cfr10I RCCGGY 2 cut(s) 328, 2963
Cfr13I GGNCC 5 cut(s) 302, 928, 1915, 2856, 3035
Cfr42I CCGCGG 1 cut(s) 3225
CseI GACGC 2 cut(s) 225, 568
CsiI ACCWGGT 1 cut(s) 2820
Csp6I GTAC 7 cut(s) 1673, 1736, 1800, 2004, 2635, 3409, 3460
CspAI ACCGGT 1 cut(s) 328
CviQI GTAC 7 cut(s) 1673, 1736, 1800, 2004, 2635, 3409, 3460
DraI TTTAAA 1 cut(s) 717
DriI GACNNNNNGTC 2 cut(s) 235, 375
EaeI YGGCCR 2 cut(s) 2367, 2839
Eam1104I CTCTTC 3 cut(s) 1085, 1495, 3200
Eam1105I GACNNNNNGTC 2 cut(s) 235, 375
EarI CTCTTC 3 cut(s) 1085, 1495, 3200
Eco130I CCWWGG 3 cut(s) 863, 2357, 3152
Eco147I AGGCCT 1 cut(s) 2613
Eco24I GRGCYC 1 cut(s) 2631
Eco31I GGTCTC 2 cut(s) 1797, 2447
Eco47I GGWCC 3 cut(s) 928, 1915, 2856
Eco57I CTGAAG 4 cut(s) 115, 192, 1066, 1094
Eco88I CYCGRG 1 cut(s) 600
Eco91I GGTNACC 1 cut(s) 1444
EcoNI CCTNNNNNAGG 1 cut(s) 1116
EcoO109I RGGNCCY 2 cut(s) 1915, 2856
EcoO65I GGTNACC 1 cut(s) 1444
EcoRI GAATTC 3 cut(s) 591, 1397, 3415
EcoT14I CCWWGG 3 cut(s) 863, 2357, 3152
EcoT22I ATGCAT 3 cut(s) 1479, 1707, 2418
EcoT38I GRGCYC 1 cut(s) 2631
ErhI CCWWGG 3 cut(s) 863, 2357, 3152
FaqI GGGAC 5 cut(s) 337, 1897, 2790, 2869, 3262
FauNDI CATATG 1 cut(s) 620
FbaI TGATCA 1 cut(s) 2673
FblI GTMKAC 1 cut(s) 1939
Fnu4HI GCNGC 4 cut(s) 179, 444, 742, 1867
FokI GGATG 8 cut(s) 258, 954, 1404, 1542, 1714, 1761, 2194, 3408
FriOI GRGCYC 1 cut(s) 2631
Fsp4HI GCNGC 4 cut(s) 179, 444, 742, 1867
FspI TGCGCA 1 cut(s) 182
GlaI GCGC 2 cut(s) 182, 884
GluI GCNGC 4 cut(s) 179, 444, 742, 1867
GsuI CTGGAG 2 cut(s) 1706, 2756
HaeIII GGCC 7 cut(s) 303, 509, 2252, 2369, 2613, 2841, 3036
HapII CCGG 5 cut(s) 117, 243, 300, 329, 2964
HgaI GACGC 2 cut(s) 225, 568
HhaI GCGC 2 cut(s) 183, 885
Hin1I GRCGYC 1 cut(s) 560
Hin6I GCGC 2 cut(s) 181, 883
HinP1I GCGC 2 cut(s) 181, 883
HincII GTYRAC 3 cut(s) 430, 1940, 2971
HindII GTYRAC 3 cut(s) 430, 1940, 2971
HindIII AAGCTT 2 cut(s) 2090, 3182
HpaI GTTAAC 1 cut(s) 2971
HpaII CCGG 5 cut(s) 117, 243, 300, 329, 2964
HphI GGTGA 7 cut(s) 29, 76, 1274, 2437, 3139, 3286, 3494
Hpy166II GTNNAC 9 cut(s) 430, 709, 1150, 1940, 2056, 2530, 2971, 3411, 3460
Hpy8I GTNNAC 9 cut(s) 430, 709, 1150, 1940, 2056, 2530, 2971, 3411, 3460
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 9 cut(s) 14, 91, 139, 403, 1604, 1884, 1906, 2603, 3107
HpyCH4III ACNGT 6 cut(s) 535, 1408, 1799, 2477, 3050, 3133
HpyCH4IV ACGT 3 cut(s) 1540, 2884, 3456
HpyF10VI GCNNNNNNNGC 7 cut(s) 30, 467, 952, 1551, 2182, 2491, 2500
HpySE526I ACGT 3 cut(s) 1540, 2884, 3456
Hsp92I GRCGYC 1 cut(s) 560
HspAI GCGC 2 cut(s) 181, 883
Kpn2I TCCGGA 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 2673
KspAI GTTAAC 1 cut(s) 2971
KspI CCGCGG 1 cut(s) 3225
LguI GCTCTTC 2 cut(s) 1085, 3200
LmnI GCTCC 3 cut(s) 580, 772, 1725
Lsp1109I GCAGC 4 cut(s) 165, 455, 753, 1878
LweI GCATC 9 cut(s) 928, 942, 1464, 1486, 1692, 1739, 2172, 2442, 3267
MabI ACCWGGT 1 cut(s) 2820
MaeII ACGT 3 cut(s) 1540, 2884, 3456
MaeIII GTNAC 9 cut(s) 35, 529, 624, 1121, 1444, 1490, 2236, 3116, 3127
MflI RGATCY 6 cut(s) 346, 463, 1528, 2898, 3027, 3226
MhlI GDGCHC 6 cut(s) 504, 1152, 2150, 2631, 3212, 3441
MlsI TGGCCA 1 cut(s) 2369
MluI ACGCGT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 2369
MlyI GAGTC 7 cut(s) 114, 1061, 1289, 1529, 1559, 2772, 3362
MmeI TCCRAC 6 cut(s) 87, 536, 568, 1357, 2496, 3078
Mox20I TGGCCA 1 cut(s) 2369
Mph1103I ATGCAT 3 cut(s) 1479, 1707, 2418
MroI TCCGGA 1 cut(s) 242
MroXI GAANNNNTTC 6 cut(s) 80, 595, 1079, 1251, 1761, 1825
MscI TGGCCA 1 cut(s) 2369
MslI CAYNNNNRTG 4 cut(s) 315, 1155, 2108, 2572
Msp20I TGGCCA 1 cut(s) 2369
MspA1I CMGCKG 1 cut(s) 3224
MspCI CTTAAG 1 cut(s) 565
MspI CCGG 5 cut(s) 117, 243, 300, 329, 2964
Mva1269I GAATGC 1 cut(s) 35
MvnI CGCG 2 cut(s) 236, 3224
MwoI GCNNNNNNNGC 7 cut(s) 30, 467, 952, 1551, 2182, 2491, 2500
NciI CCSGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 620
NlaIV GGNNCC 8 cut(s) 251, 348, 1530, 2826, 2857, 2900, 3150, 3228
NmuCI GTSAC 3 cut(s) 1490, 2236, 3127
NsbI TGCGCA 1 cut(s) 182
NsiI ATGCAT 3 cut(s) 1479, 1707, 2418
NspI RCATGY 2 cut(s) 1004, 1094
OliI CACNNNNGTG 1 cut(s) 1155
PaeI GCATGC 2 cut(s) 1004, 1094
PagI TCATGA 1 cut(s) 1269
PceI AGGCCT 1 cut(s) 2613
PciSI GCTCTTC 2 cut(s) 1085, 3200
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 6 cut(s) 80, 595, 1079, 1251, 1761, 1825
PflMI CCANNNNNTGG 1 cut(s) 3062
PfoI TCCNGGA 4 cut(s) 273, 970, 2812, 2827
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 4 cut(s) 180, 445, 743, 1868
PleI GAGTC 7 cut(s) 114, 1061, 1289, 1528, 1559, 2772, 3362
PpsI GAGTC 7 cut(s) 114, 1061, 1289, 1528, 1559, 2772, 3362
PpuMI RGGWCCY 2 cut(s) 1915, 2856
Psp5II RGGWCCY 2 cut(s) 1915, 2856
PspEI GGTNACC 1 cut(s) 1444
PspN4I GGNNCC 8 cut(s) 251, 348, 1530, 2826, 2857, 2900, 3150, 3228
PspPI GGNCC 5 cut(s) 302, 928, 1915, 2856, 3035
PspPPI RGGWCCY 2 cut(s) 1915, 2856
PstI CTGCAG 1 cut(s) 2540
PsuI RGATCY 6 cut(s) 346, 463, 1528, 2898, 3027, 3226
RsaI GTAC 7 cut(s) 1674, 1737, 1801, 2005, 2636, 3410, 3461
RsaNI GTAC 7 cut(s) 1673, 1736, 1800, 2004, 2635, 3409, 3460
RseI CAYNNNNRTG 4 cut(s) 315, 1155, 2108, 2572
SacII CCGCGG 1 cut(s) 3225
SalI GTCGAC 1 cut(s) 1938
SapI GCTCTTC 2 cut(s) 1085, 3200
SatI GCNGC 4 cut(s) 179, 444, 742, 1867
Sau96I GGNCC 5 cut(s) 302, 928, 1915, 2856, 3035
SchI GAGTC 7 cut(s) 114, 1061, 1289, 1529, 1559, 2772, 3362
SduI GDGCHC 6 cut(s) 504, 1152, 2150, 2631, 3212, 3441
SexAI ACCWGGT 1 cut(s) 2820
SfaNI GCATC 9 cut(s) 928, 942, 1464, 1486, 1692, 1739, 2172, 2442, 3267
SfcI CTRYAG 2 cut(s) 1861, 2536
Sfr303I CCGCGG 1 cut(s) 3225
SgrBI CCGCGG 1 cut(s) 3225
SinI GGWCC 3 cut(s) 928, 1915, 2856
SmiI ATTTAAAT 1 cut(s) 717
SmiMI CAYNNNNRTG 4 cut(s) 315, 1155, 2108, 2572
SmlI CTYRAG 7 cut(s) 49, 149, 565, 749, 1870, 2949, 3440
SmoI CTYRAG 7 cut(s) 49, 149, 565, 749, 1870, 2949, 3440
SpeI ACTAGT 1 cut(s) 2050
SphI GCATGC 2 cut(s) 1004, 1094
SseBI AGGCCT 1 cut(s) 2613
SsiI CCGC 3 cut(s) 313, 3222, 3224
StuI AGGCCT 1 cut(s) 2613
StyI CCWWGG 3 cut(s) 863, 2357, 3152
SwaI ATTTAAAT 1 cut(s) 717
TaaI ACNGT 6 cut(s) 535, 1408, 1799, 2477, 3050, 3133
TaiI ACGT 3 cut(s) 1543, 2887, 3459
TaqI TCGA 7 cut(s) 519, 1062, 1202, 1939, 2454, 3304, 3419
TatI WGTACW 5 cut(s) 1672, 1735, 1799, 2003, 3459
TscAI CASTG 9 cut(s) 453, 948, 1077, 1413, 1750, 1802, 1960, 2388, 3176
TseFI GTSAC 3 cut(s) 1490, 2236, 3127
TseI GCWGC 4 cut(s) 178, 443, 741, 1866
Tsp45I GTSAC 3 cut(s) 1490, 2236, 3127
TspGWI ACGGA 4 cut(s) 339, 941, 1117, 3380
TspRI CASTG 9 cut(s) 453, 948, 1077, 1413, 1750, 1802, 1960, 2388, 3176
Van91I CCANNNNNTGG 1 cut(s) 3062
Vha464I CTTAAG 1 cut(s) 565
VneI GTGCAC 1 cut(s) 1148
VpaK11BI GGWCC 3 cut(s) 928, 1915, 2856
XagI CCTNNNNNAGG 1 cut(s) 1116
XapI RAATTY 7 cut(s) 591, 718, 1397, 1822, 2786, 2932, 3415
XbaI TCTAGA 3 cut(s) 1516, 2065, 2303
XceI RCATGY 2 cut(s) 1004, 1094
XcmI CCANNNNNNNNNTGG 1 cut(s) 2849
XmaJI CCTAGG 2 cut(s) 863, 2357
XmiI GTMKAC 1 cut(s) 1939
XmnI GAANNNNTTC 6 cut(s) 80, 595, 1079, 1251, 1761, 1825
Zsp2I ATGCAT 3 cut(s) 1479, 1707, 2418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.