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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 173 |
| Acc36I | ACCTGC | 1 cut(s) | 639 |
| AccB1I | GGYRCC | 2 cut(s) | 276, 2713 |
| AccI | GTMKAC | 2 cut(s) | 653, 2019 |
| AciI | CCGC | 1 cut(s) | 1887 |
| AclWI | GGATC | 9 cut(s) | 17, 292, 356, 369, 948, 1930, 2043, 2056, 2759 |
| AcoI | YGGCCR | 1 cut(s) | 1120 |
| AcsI | RAATTY | 5 cut(s) | 1781, 1817, 2241, 2594, 2749 |
| AcuI | CTGAAG | 1 cut(s) | 1074 |
| AcvI | CACGTG | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 127, 400, 2780 |
| AflIII | ACRYGT | 4 cut(s) | 69, 261, 1656, 2730 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 262 |
| AjnI | CCWGG | 4 cut(s) | 991, 2576, 2778, 2833 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1238, 1270 |
| Alw21I | GWGCWC | 1 cut(s) | 1101 |
| Alw26I | GTCTC | 7 cut(s) | 156, 552, 1888, 2062, 2225, 2380, 2486 |
| AlwI | GGATC | 9 cut(s) | 17, 292, 356, 369, 948, 1930, 2043, 2056, 2759 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2785 |
| AoxI | GGCC | 4 cut(s) | 88, 129, 1120, 2836 |
| ApeKI | GCWGC | 3 cut(s) | 17, 756, 2586 |
| ApoI | RAATTY | 5 cut(s) | 1781, 1817, 2241, 2594, 2749 |
| AseI | ATTAAT | 2 cut(s) | 630, 881 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 610, 1272, 1533 |
| AspLEI | GCGC | 1 cut(s) | 143 |
| AspS9I | GGNCC | 5 cut(s) | 130, 318, 949, 1926, 2862 |
| AsuHPI | GGTGA | 5 cut(s) | 304, 454, 1295, 1477, 2518 |
| AsuII | TTCGAA | 1 cut(s) | 970 |
| AvaII | GGWCC | 4 cut(s) | 318, 949, 1926, 2862 |
| AxyI | CCTNAGG | 1 cut(s) | 2105 |
| BaeGI | GKGCMC | 1 cut(s) | 1664 |
| BalI | TGGCCA | 1 cut(s) | 1122 |
| BamHI | GGATCC | 2 cut(s) | 361, 2048 |
| BanI | GGYRCC | 2 cut(s) | 276, 2713 |
| BanII | GRGCYC | 2 cut(s) | 1042, 1101 |
| BbrPI | CACGTG | 1 cut(s) | 70 |
| BbsI | GAAGAC | 1 cut(s) | 340 |
| Bbv12I | GWGCWC | 1 cut(s) | 1101 |
| BbvI | GCAGC | 3 cut(s) | 29, 768, 2573 |
| BccI | CCATC | 9 cut(s) | 373, 484, 716, 1137, 1403, 1472, 1476, 1752, 1794 |
| BceAI | ACGGC | 1 cut(s) | 144 |
| BciT130I | CCWGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| BclI | TGATCA | 1 cut(s) | 2673 |
| BcoDI | GTCTC | 7 cut(s) | 156, 552, 1888, 2062, 2225, 2380, 2486 |
| BfmI | CTRYAG | 2 cut(s) | 206, 434 |
| BfoI | RGCGCY | 1 cut(s) | 144 |
| BfuAI | ACCTGC | 1 cut(s) | 639 |
| BglII | AGATCT | 1 cut(s) | 478 |
| BisI | GCNGC | 4 cut(s) | 18, 757, 1888, 2587 |
| BlsI | GCNGC | 4 cut(s) | 19, 758, 1889, 2588 |
| BmcAI | AGTACT | 1 cut(s) | 966 |
| Bme1390I | CCNGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| Bme18I | GGWCC | 4 cut(s) | 318, 949, 1926, 2862 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 262 |
| BmgT120I | GGNCC | 5 cut(s) | 130, 318, 949, 1926, 2862 |
| BmiI | GGNNCC | 7 cut(s) | 278, 363, 2050, 2450, 2715, 2832, 2863 |
| BmrFI | CCNGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| BmsI | GCATC | 7 cut(s) | 201, 886, 949, 1588, 1713, 2100, 2335 |
| BpiI | GAAGAC | 1 cut(s) | 340 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 574, 606 |
| Bpu14I | TTCGAA | 1 cut(s) | 970 |
| BpuEI | CTTGAG | 3 cut(s) | 1065, 1912, 2249 |
| Bsa29I | ATCGAT | 1 cut(s) | 982 |
| BsaAI | YACGTR | 2 cut(s) | 70, 262 |
| BsaBI | GATNNNNATC | 2 cut(s) | 360, 939 |
| BsaJI | CCNNGG | 6 cut(s) | 991, 1556, 2044, 2577, 2709, 2779 |
| BsaWI | WCCGGW | 1 cut(s) | 1790 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2618, 2648 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 127, 400, 2780 |
| Bse1I | ACTGG | 1 cut(s) | 1850 |
| Bse21I | CCTNAGG | 1 cut(s) | 2105 |
| Bse3DI | GCAATG | 3 cut(s) | 871, 1356, 2378 |
| Bse8I | GATNNNNATC | 2 cut(s) | 360, 939 |
| BseBI | CCWGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| BseCI | ATCGAT | 1 cut(s) | 982 |
| BseDI | CCNNGG | 6 cut(s) | 991, 1556, 2044, 2577, 2709, 2779 |
| BseJI | GATNNNNATC | 2 cut(s) | 360, 939 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 127, 400, 2780 |
| BseMI | GCAATG | 3 cut(s) | 871, 1356, 2378 |
| BseMII | CTCAG | 5 cut(s) | 68, 336, 1762, 1960, 2509 |
| BseNI | ACTGG | 1 cut(s) | 1850 |
| BseRI | GAGGAG | 3 cut(s) | 25, 198, 328 |
| BseSI | GKGCMC | 1 cut(s) | 1664 |
| BseXI | GCAGC | 3 cut(s) | 29, 768, 2573 |
| BsgI | GTGCAG | 1 cut(s) | 2572 |
| BshFI | GGCC | 4 cut(s) | 90, 131, 1122, 2838 |
| BshNI | GGYRCC | 2 cut(s) | 276, 2713 |
| BshVI | ATCGAT | 1 cut(s) | 982 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1101 |
| BsiSI | CCGG | 2 cut(s) | 144, 1791 |
| BslFI | GGGAC | 5 cut(s) | 253, 859, 1499, 1659, 2796 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 127, 400, 2780 |
| BsmAI | GTCTC | 7 cut(s) | 156, 552, 1888, 2062, 2225, 2380, 2486 |
| BsmBI | CGTCTC | 1 cut(s) | 156 |
| BsmFI | GGGAC | 5 cut(s) | 253, 859, 1499, 1659, 2796 |
| BsmI | GAATGC | 3 cut(s) | 610, 612, 1437 |
| BsnI | GGCC | 4 cut(s) | 90, 131, 1122, 2838 |
| Bsp119I | TTCGAA | 1 cut(s) | 970 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1042, 1101, 1664 |
| Bsp1407I | TGTACA | 4 cut(s) | 2024, 2474, 2727, 2733 |
| Bsp19I | CCATGG | 2 cut(s) | 2044, 2709 |
| BspACI | CCGC | 1 cut(s) | 1887 |
| BspANI | GGCC | 4 cut(s) | 90, 131, 1122, 2838 |
| BspCNI | CTCAG | 5 cut(s) | 69, 335, 1761, 1959, 2508 |
| BspDI | ATCGAT | 1 cut(s) | 982 |
| BspLI | GGNNCC | 7 cut(s) | 278, 363, 2050, 2450, 2715, 2832, 2863 |
| BspMAI | CTGCAG | 2 cut(s) | 210, 438 |
| BspMI | ACCTGC | 1 cut(s) | 639 |
| BspPI | GGATC | 9 cut(s) | 17, 292, 356, 369, 948, 1930, 2043, 2056, 2759 |
| BspT104I | TTCGAA | 1 cut(s) | 970 |
| BspT107I | GGYRCC | 2 cut(s) | 276, 2713 |
| BsrDI | GCAATG | 3 cut(s) | 871, 1356, 2378 |
| BsrGI | TGTACA | 4 cut(s) | 2024, 2474, 2727, 2733 |
| BsrI | ACTGG | 1 cut(s) | 1850 |
| BssECI | CCNNGG | 6 cut(s) | 991, 1556, 2044, 2577, 2709, 2779 |
| BssT1I | CCWWGG | 3 cut(s) | 1556, 2044, 2709 |
| Bst2UI | CCWGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| Bst4CI | ACNGT | 6 cut(s) | 721, 1032, 1673, 2024, 2787, 2881 |
| Bst6I | CTCTTC | 3 cut(s) | 43, 1519, 2650 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 473 |
| BstAUI | TGTACA | 4 cut(s) | 2024, 2474, 2727, 2733 |
| BstBAI | YACGTR | 2 cut(s) | 70, 262 |
| BstBI | TTCGAA | 1 cut(s) | 970 |
| BstC8I | GCNNGC | 3 cut(s) | 1023, 1113, 2420 |
| BstDSI | CCRYGG | 2 cut(s) | 2044, 2709 |
| BstEII | GGTNACC | 1 cut(s) | 2499 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 398 |
| BstH2I | RGCGCY | 1 cut(s) | 144 |
| BstHHI | GCGC | 1 cut(s) | 143 |
| BstMAI | GTCTC | 7 cut(s) | 156, 552, 1888, 2062, 2225, 2380, 2486 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 205, 473, 482, 1561, 2844, 2853 |
| BstNI | CCWGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| BstNSI | RCATGY | 4 cut(s) | 1025, 1654, 1660, 2734 |
| BstPI | GGTNACC | 1 cut(s) | 2499 |
| BstSCI | CCNGG | 4 cut(s) | 991, 2576, 2778, 2833 |
| BstSFI | CTRYAG | 2 cut(s) | 206, 434 |
| BstSLI | GKGCMC | 1 cut(s) | 1664 |
| BstV1I | GCAGC | 3 cut(s) | 29, 768, 2573 |
| BstV2I | GAAGAC | 1 cut(s) | 340 |
| BstX2I | RGATCY | 4 cut(s) | 361, 478, 1935, 2048 |
| BstYI | RGATCY | 4 cut(s) | 361, 478, 1935, 2048 |
| Bsu15I | ATCGAT | 1 cut(s) | 982 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2105 |
| BsuRI | GGCC | 4 cut(s) | 90, 131, 1122, 2838 |
| BsuTUI | ATCGAT | 1 cut(s) | 982 |
| BtgI | CCRYGG | 2 cut(s) | 2044, 2709 |
| BtgZI | GCGATG | 1 cut(s) | 694 |
| BtsI | GCAGTG | 1 cut(s) | 431 |
| BtsIMutI | CAGTG | 3 cut(s) | 111, 431, 1857 |
| BveI | ACCTGC | 1 cut(s) | 639 |
| Cac8I | GCNNGC | 3 cut(s) | 1023, 1113, 2420 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2785 |
| CfoI | GCGC | 1 cut(s) | 143 |
| Cfr13I | GGNCC | 5 cut(s) | 130, 318, 949, 1926, 2862 |
| ClaI | ATCGAT | 1 cut(s) | 982 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1343, 1378 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 173 |
| DriI | GACNNNNNGTC | 1 cut(s) | 262 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 173 |
| EaeI | YGGCCR | 1 cut(s) | 1120 |
| Eam1104I | CTCTTC | 3 cut(s) | 43, 1519, 2650 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 262 |
| EarI | CTCTTC | 3 cut(s) | 43, 1519, 2650 |
| Ecl136II | GAGCTC | 1 cut(s) | 1099 |
| Eco130I | CCWWGG | 3 cut(s) | 1556, 2044, 2709 |
| Eco24I | GRGCYC | 2 cut(s) | 1042, 1101 |
| Eco32I | GATATC | 1 cut(s) | 2524 |
| Eco47I | GGWCC | 4 cut(s) | 318, 949, 1926, 2862 |
| Eco53kI | GAGCTC | 1 cut(s) | 1099 |
| Eco57I | CTGAAG | 1 cut(s) | 1074 |
| Eco72I | CACGTG | 1 cut(s) | 70 |
| Eco81I | CCTNAGG | 1 cut(s) | 2105 |
| Eco91I | GGTNACC | 1 cut(s) | 2499 |
| EcoICRI | GAGCTC | 1 cut(s) | 1099 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 398 |
| EcoO109I | RGGNCCY | 2 cut(s) | 318, 2862 |
| EcoO65I | GGTNACC | 1 cut(s) | 2499 |
| EcoRII | CCWGG | 4 cut(s) | 991, 2576, 2778, 2833 |
| EcoRV | GATATC | 1 cut(s) | 2524 |
| EcoT14I | CCWWGG | 3 cut(s) | 1556, 2044, 2709 |
| EcoT22I | ATGCAT | 2 cut(s) | 612, 1714 |
| EcoT38I | GRGCYC | 2 cut(s) | 1042, 1101 |
| ErhI | CCWWGG | 3 cut(s) | 1556, 2044, 2709 |
| Esp3I | CGTCTC | 1 cut(s) | 156 |
| FaqI | GGGAC | 5 cut(s) | 253, 859, 1499, 1659, 2796 |
| FauNDI | CATATG | 2 cut(s) | 945, 1497 |
| FbaI | TGATCA | 1 cut(s) | 2673 |
| FblI | GTMKAC | 2 cut(s) | 653, 2019 |
| Fnu4HI | GCNGC | 4 cut(s) | 18, 757, 1888, 2587 |
| FriOI | GRGCYC | 2 cut(s) | 1042, 1101 |
| Fsp4HI | GCNGC | 4 cut(s) | 18, 757, 1888, 2587 |
| GlaI | GCGC | 1 cut(s) | 142 |
| GluI | GCNGC | 4 cut(s) | 18, 757, 1888, 2587 |
| HaeII | RGCGCY | 1 cut(s) | 144 |
| HaeIII | GGCC | 4 cut(s) | 90, 131, 1122, 2838 |
| HapII | CCGG | 2 cut(s) | 144, 1791 |
| HhaI | GCGC | 1 cut(s) | 143 |
| Hin6I | GCGC | 1 cut(s) | 141 |
| HinP1I | GCGC | 1 cut(s) | 141 |
| HincII | GTYRAC | 2 cut(s) | 428, 654 |
| HindII | GTYRAC | 2 cut(s) | 428, 654 |
| HpaII | CCGG | 2 cut(s) | 144, 1791 |
| HphI | GGTGA | 5 cut(s) | 304, 454, 1295, 1477, 2518 |
| Hpy166II | GTNNAC | 6 cut(s) | 428, 654, 724, 2020, 2475, 2736 |
| Hpy188I | TCNGA | 9 cut(s) | 86, 161, 325, 832, 1159, 1376, 1509, 1863, 2341 |
| Hpy8I | GTNNAC | 6 cut(s) | 428, 654, 724, 2020, 2475, 2736 |
| Hpy99I | CGWCG | 2 cut(s) | 170, 1454 |
| HpyAV | CCTTC | 7 cut(s) | 182, 433, 439, 743, 1628, 1901, 2576 |
| HpyCH4III | ACNGT | 6 cut(s) | 721, 1032, 1673, 2024, 2787, 2881 |
| HpyCH4IV | ACGT | 5 cut(s) | 69, 261, 2040, 2555, 2794 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 205, 473, 482, 1561, 2844, 2853 |
| HpySE526I | ACGT | 5 cut(s) | 69, 261, 2040, 2555, 2794 |
| HspAI | GCGC | 1 cut(s) | 141 |
| Ksp22I | TGATCA | 1 cut(s) | 2673 |
| LmnI | GCTCC | 3 cut(s) | 595, 1096, 2454 |
| Lsp1109I | GCAGC | 3 cut(s) | 29, 768, 2573 |
| LweI | GCATC | 7 cut(s) | 201, 886, 949, 1588, 1713, 2100, 2335 |
| MaeII | ACGT | 5 cut(s) | 69, 261, 2040, 2555, 2794 |
| MaeIII | GTNAC | 5 cut(s) | 639, 1048, 1465, 2499, 2640 |
| MfeI | CAATTG | 5 cut(s) | 1428, 1629, 2190, 2409, 2530 |
| MflI | RGATCY | 4 cut(s) | 361, 478, 1935, 2048 |
| MhlI | GDGCHC | 3 cut(s) | 1042, 1101, 1664 |
| MlsI | TGGCCA | 1 cut(s) | 1122 |
| MluNI | TGGCCA | 1 cut(s) | 1122 |
| MlyI | GAGTC | 5 cut(s) | 530, 1072, 1310, 1583, 2207 |
| MmeI | TCCRAC | 3 cut(s) | 583, 1354, 2682 |
| Mox20I | TGGCCA | 1 cut(s) | 1122 |
| Mph1103I | ATGCAT | 2 cut(s) | 612, 1714 |
| MroXI | GAANNNNTTC | 3 cut(s) | 610, 1272, 1533 |
| MscI | TGGCCA | 1 cut(s) | 1122 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1655, 2129, 2723 |
| Msp20I | TGGCCA | 1 cut(s) | 1122 |
| MspA1I | CMGCKG | 1 cut(s) | 20 |
| MspI | CCGG | 2 cut(s) | 144, 1791 |
| MspR9I | CCNGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| MunI | CAATTG | 5 cut(s) | 1428, 1629, 2190, 2409, 2530 |
| Mva1269I | GAATGC | 3 cut(s) | 610, 612, 1437 |
| MvaI | CCWGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 205, 473, 482, 1561, 2844, 2853 |
| NcoI | CCATGG | 2 cut(s) | 2044, 2709 |
| NdeI | CATATG | 2 cut(s) | 945, 1497 |
| NlaIV | GGNNCC | 7 cut(s) | 278, 363, 2050, 2450, 2715, 2832, 2863 |
| NmuCI | GTSAC | 1 cut(s) | 1465 |
| NsiI | ATGCAT | 2 cut(s) | 612, 1714 |
| NspI | RCATGY | 4 cut(s) | 1025, 1654, 1660, 2734 |
| NspV | TTCGAA | 1 cut(s) | 970 |
| PacI | TTAATTAA | 1 cut(s) | 885 |
| PaeI | GCATGC | 1 cut(s) | 1025 |
| PciI | ACATGT | 2 cut(s) | 1656, 2730 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 58, 174 |
| PctI | GAATGC | 3 cut(s) | 610, 612, 1437 |
| PdmI | GAANNNNTTC | 3 cut(s) | 610, 1272, 1533 |
| PfeI | GAWTC | 5 cut(s) | 1088, 1510, 1544, 1829, 2705 |
| PflFI | GACNNNGTC | 1 cut(s) | 332 |
| PkrI | GCNGC | 4 cut(s) | 19, 758, 1889, 2588 |
| PleI | GAGTC | 5 cut(s) | 529, 1072, 1310, 1583, 2207 |
| PmaCI | CACGTG | 1 cut(s) | 70 |
| PmlI | CACGTG | 1 cut(s) | 70 |
| PpsI | GAGTC | 5 cut(s) | 529, 1072, 1310, 1583, 2207 |
| Ppu21I | YACGTR | 2 cut(s) | 70, 262 |
| PpuMI | RGGWCCY | 2 cut(s) | 318, 2862 |
| PscI | ACATGT | 2 cut(s) | 1656, 2730 |
| PshBI | ATTAAT | 2 cut(s) | 630, 881 |
| Psp124BI | GAGCTC | 1 cut(s) | 1101 |
| Psp5II | RGGWCCY | 2 cut(s) | 318, 2862 |
| Psp6I | CCWGG | 4 cut(s) | 991, 2576, 2778, 2833 |
| PspCI | CACGTG | 1 cut(s) | 70 |
| PspEI | GGTNACC | 1 cut(s) | 2499 |
| PspGI | CCWGG | 4 cut(s) | 991, 2576, 2778, 2833 |
| PspN4I | GGNNCC | 7 cut(s) | 278, 363, 2050, 2450, 2715, 2832, 2863 |
| PspPI | GGNCC | 5 cut(s) | 130, 318, 949, 1926, 2862 |
| PspPPI | RGGWCCY | 2 cut(s) | 318, 2862 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2272, 2304 |
| PstI | CTGCAG | 2 cut(s) | 210, 438 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2785 |
| PsuI | RGATCY | 4 cut(s) | 361, 478, 1935, 2048 |
| PsyI | GACNNNGTC | 1 cut(s) | 332 |
| PvuII | CAGCTG | 1 cut(s) | 20 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1655, 2129, 2723 |
| SacI | GAGCTC | 1 cut(s) | 1101 |
| SalI | GTCGAC | 1 cut(s) | 652 |
| SatI | GCNGC | 4 cut(s) | 18, 757, 1888, 2587 |
| Sau96I | GGNCC | 5 cut(s) | 130, 318, 949, 1926, 2862 |
| ScaI | AGTACT | 1 cut(s) | 966 |
| SchI | GAGTC | 5 cut(s) | 530, 1072, 1310, 1583, 2207 |
| ScrFI | CCNGG | 4 cut(s) | 993, 2578, 2780, 2835 |
| SduI | GDGCHC | 3 cut(s) | 1042, 1101, 1664 |
| SfaNI | GCATC | 7 cut(s) | 201, 886, 949, 1588, 1713, 2100, 2335 |
| SfcI | CTRYAG | 2 cut(s) | 206, 434 |
| SfuI | TTCGAA | 1 cut(s) | 970 |
| SinI | GGWCC | 4 cut(s) | 318, 949, 1926, 2862 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1655, 2129, 2723 |
| SmlI | CTYRAG | 3 cut(s) | 1080, 1891, 2228 |
| SmoI | CTYRAG | 3 cut(s) | 1080, 1891, 2228 |
| SphI | GCATGC | 1 cut(s) | 1025 |
| SsiI | CCGC | 1 cut(s) | 1887 |
| SspI | AATATT | 2 cut(s) | 744, 1154 |
| SstI | GAGCTC | 1 cut(s) | 1101 |
| StyD4I | CCNGG | 4 cut(s) | 991, 2576, 2778, 2833 |
| StyI | CCWWGG | 3 cut(s) | 1556, 2044, 2709 |
| TaaI | ACNGT | 6 cut(s) | 721, 1032, 1673, 2024, 2787, 2881 |
| TaiI | ACGT | 5 cut(s) | 72, 264, 2043, 2558, 2797 |
| TaqII | GACCGA | 1 cut(s) | 1353 |
| TatI | WGTACW | 6 cut(s) | 964, 2024, 2474, 2628, 2727, 2733 |
| TauI | GCSGC | 1 cut(s) | 1890 |
| TfiI | GAWTC | 5 cut(s) | 1088, 1510, 1544, 1829, 2705 |
| TscAI | CASTG | 3 cut(s) | 118, 438, 1857 |
| TseFI | GTSAC | 1 cut(s) | 1465 |
| TseI | GCWGC | 3 cut(s) | 17, 756, 2586 |
| Tsp45I | GTSAC | 1 cut(s) | 1465 |
| TspDTI | ATGAA | 6 cut(s) | 186, 869, 989, 1920, 2102, 2469 |
| TspGWI | ACGGA | 3 cut(s) | 1782, 2737, 2760 |
| TspRI | CASTG | 3 cut(s) | 118, 438, 1857 |
| Tth111I | GACNNNGTC | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 4 cut(s) | 318, 949, 1926, 2862 |
| VspI | ATTAAT | 2 cut(s) | 630, 881 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 398 |
| XapI | RAATTY | 5 cut(s) | 1781, 1817, 2241, 2594, 2749 |
| XbaI | TCTAGA | 1 cut(s) | 1999 |
| XceI | RCATGY | 4 cut(s) | 1025, 1654, 1660, 2734 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2051 |
| XmiI | GTMKAC | 2 cut(s) | 653, 2019 |
| XmnI | GAANNNNTTC | 3 cut(s) | 610, 1272, 1533 |
| ZrmI | AGTACT | 1 cut(s) | 966 |
| Zsp2I | ATGCAT | 2 cut(s) | 612, 1714 |