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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 423, 2853 |
| AarI | CACCTGC | 1 cut(s) | 2767 |
| Acc36I | ACCTGC | 1 cut(s) | 2767 |
| Acc65I | GGTACC | 1 cut(s) | 2098 |
| AccB1I | GGYRCC | 1 cut(s) | 2098 |
| AccI | GTMKAC | 2 cut(s) | 271, 1674 |
| AccII | CGCG | 1 cut(s) | 720 |
| AciI | CCGC | 4 cut(s) | 73, 1381, 1542, 2985 |
| AclWI | GGATC | 9 cut(s) | 53, 66, 355, 645, 1432, 1585, 1698, 1711, 2351 |
| AcoI | YGGCCR | 1 cut(s) | 817 |
| AcsI | RAATTY | 6 cut(s) | 477, 1336, 1436, 1896, 2341, 2680 |
| AcuI | CTGAAG | 1 cut(s) | 784 |
| AcyI | GRCGYC | 1 cut(s) | 2955 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 72, 2372, 2648 |
| AflIII | ACRYGT | 1 cut(s) | 1320 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 87 |
| AjiI | CACGTC | 1 cut(s) | 55 |
| AjnI | CCWGG | 6 cut(s) | 688, 2174, 2370, 2425, 2641, 3064 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 935, 967 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1853, 1885 |
| AluBI | AGCT | 9 cut(s) | 23, 206, 456, 603, 796, 862, 893, 2857, 2990 |
| AluI | AGCT | 9 cut(s) | 23, 206, 456, 603, 796, 862, 893, 2857, 2990 |
| Alw21I | GWGCWC | 2 cut(s) | 798, 2979 |
| Alw26I | GTCTC | 6 cut(s) | 1543, 1717, 1880, 1978, 2084, 2883 |
| AlwI | GGATC | 9 cut(s) | 53, 66, 355, 645, 1432, 1585, 1698, 1711, 2351 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2377 |
| Ama87I | CYCGRG | 1 cut(s) | 2499 |
| AoxI | GGCC | 3 cut(s) | 496, 817, 2428 |
| ApeKI | GCWGC | 2 cut(s) | 453, 2987 |
| ApoI | RAATTY | 6 cut(s) | 477, 1336, 1436, 1896, 2341, 2680 |
| AseI | ATTAAT | 1 cut(s) | 1140 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 307, 1197 |
| Asp718I | GGTACC | 1 cut(s) | 2098 |
| AspLEI | GCGC | 2 cut(s) | 720, 722 |
| AspS9I | GGNCC | 2 cut(s) | 2454, 3050 |
| AsuHPI | GGTGA | 5 cut(s) | 1144, 2116, 2657, 2974, 2995 |
| AsuII | TTCGAA | 1 cut(s) | 667 |
| AvaI | CYCGRG | 1 cut(s) | 2499 |
| AvaII | GGWCC | 2 cut(s) | 2454, 3050 |
| AxyI | CCTNAGG | 1 cut(s) | 1760 |
| BaeGI | GKGCMC | 1 cut(s) | 1328 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 738, 771 |
| BalI | TGGCCA | 1 cut(s) | 819 |
| BamHI | GGATCC | 2 cut(s) | 58, 1703 |
| BanI | GGYRCC | 1 cut(s) | 2098 |
| BanII | GRGCYC | 1 cut(s) | 798 |
| BauI | CACGAG | 1 cut(s) | 215 |
| BbsI | GAAGAC | 4 cut(s) | 37, 404, 2661, 3018 |
| Bbv12I | GWGCWC | 2 cut(s) | 798, 2979 |
| BbvI | GCAGC | 2 cut(s) | 465, 2999 |
| BceAI | ACGGC | 1 cut(s) | 29 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 442, 476 |
| BciT130I | CCWGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| BclI | TGATCA | 2 cut(s) | 2271, 2689 |
| BcoDI | GTCTC | 6 cut(s) | 1543, 1717, 1880, 1978, 2084, 2883 |
| BfuAI | ACCTGC | 1 cut(s) | 2767 |
| BglII | AGATCT | 1 cut(s) | 175 |
| BisI | GCNGC | 2 cut(s) | 454, 2988 |
| BlsI | GCNGC | 2 cut(s) | 455, 2989 |
| Bme1390I | CCNGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| Bme18I | GGWCC | 2 cut(s) | 2454, 3050 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 87 |
| BmeT110I | CYCGRG | 1 cut(s) | 2499 |
| BmgBI | CACGTC | 1 cut(s) | 55 |
| BmgT120I | GGNCC | 2 cut(s) | 2454, 3050 |
| BmiI | GGNNCC | 8 cut(s) | 60, 77, 1705, 2048, 2100, 2424, 2455, 3051 |
| BmrFI | CCNGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| BmsI | GCATC | 7 cut(s) | 583, 1152, 1252, 1368, 1755, 1933, 2772 |
| BoxI | GACNNNNGTC | 1 cut(s) | 217 |
| BpiI | GAAGAC | 4 cut(s) | 37, 404, 2661, 3018 |
| Bpu14I | TTCGAA | 1 cut(s) | 667 |
| BpuEI | CTTGAG | 2 cut(s) | 762, 1904 |
| Bsa29I | ATCGAT | 1 cut(s) | 1119 |
| BsaBI | GATNNNNATC | 1 cut(s) | 636 |
| BsaHI | GRCGYC | 1 cut(s) | 2955 |
| BsaJI | CCNNGG | 7 cut(s) | 1220, 1699, 2175, 2371, 2860, 2962, 3064 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1853, 1883, 2216, 2246 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 72, 2372, 2648 |
| Bse1I | ACTGG | 2 cut(s) | 1077, 2681 |
| Bse21I | CCTNAGG | 1 cut(s) | 1760 |
| Bse3DI | GCAATG | 6 cut(s) | 405, 871, 1023, 1059, 1976, 2307 |
| Bse8I | GATNNNNATC | 1 cut(s) | 636 |
| BseBI | CCWGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| BseCI | ATCGAT | 1 cut(s) | 1119 |
| BseDI | CCNNGG | 7 cut(s) | 1220, 1699, 2175, 2371, 2860, 2962, 3064 |
| BseJI | GATNNNNATC | 1 cut(s) | 636 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 72, 2372, 2648 |
| BseMI | GCAATG | 6 cut(s) | 405, 871, 1023, 1059, 1976, 2307 |
| BseMII | CTCAG | 7 cut(s) | 33, 573, 1538, 1615, 2107, 2597, 3048 |
| BseNI | ACTGG | 2 cut(s) | 1077, 2681 |
| BsePI | GCGCGC | 1 cut(s) | 718 |
| BseSI | GKGCMC | 1 cut(s) | 1328 |
| BseXI | GCAGC | 2 cut(s) | 465, 2999 |
| BsgI | GTGCAG | 2 cut(s) | 1178, 2795 |
| Bsh1236I | CGCG | 1 cut(s) | 720 |
| BshFI | GGCC | 3 cut(s) | 498, 819, 2430 |
| BshNI | GGYRCC | 1 cut(s) | 2098 |
| BshVI | ATCGAT | 1 cut(s) | 1119 |
| BsiHKAI | GWGCWC | 2 cut(s) | 798, 2979 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2499 |
| BsiSI | CCGG | 1 cut(s) | 2952 |
| BslFI | GGGAC | 4 cut(s) | 1163, 2388, 2879, 3063 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 72, 2372, 2648 |
| BsmAI | GTCTC | 6 cut(s) | 1543, 1717, 1880, 1978, 2084, 2883 |
| BsmBI | CGTCTC | 1 cut(s) | 2883 |
| BsmFI | GGGAC | 4 cut(s) | 1163, 2388, 2879, 3063 |
| BsmI | GAATGC | 4 cut(s) | 307, 1104, 2135, 2536 |
| BsnI | GGCC | 3 cut(s) | 498, 819, 2430 |
| BsoBI | CYCGRG | 1 cut(s) | 2499 |
| Bsp119I | TTCGAA | 1 cut(s) | 667 |
| Bsp1286I | GDGCHC | 3 cut(s) | 798, 1328, 2979 |
| Bsp1407I | TGTACA | 4 cut(s) | 1411, 1442, 1679, 2072 |
| Bsp19I | CCATGG | 1 cut(s) | 1699 |
| BspACI | CCGC | 4 cut(s) | 73, 1381, 1542, 2985 |
| BspANI | GGCC | 3 cut(s) | 498, 819, 2430 |
| BspCNI | CTCAG | 7 cut(s) | 32, 574, 1539, 1614, 2106, 2598, 3047 |
| BspDI | ATCGAT | 1 cut(s) | 1119 |
| BspFNI | CGCG | 1 cut(s) | 720 |
| BspHI | TCATGA | 1 cut(s) | 294 |
| BspLI | GGNNCC | 8 cut(s) | 60, 77, 1705, 2048, 2100, 2424, 2455, 3051 |
| BspMI | ACCTGC | 1 cut(s) | 2767 |
| BspPI | GGATC | 9 cut(s) | 53, 66, 355, 645, 1432, 1585, 1698, 1711, 2351 |
| BspQI | GCTCTTC | 3 cut(s) | 803, 900, 2895 |
| BspT104I | TTCGAA | 1 cut(s) | 667 |
| BspT107I | GGYRCC | 1 cut(s) | 2098 |
| BsrDI | GCAATG | 6 cut(s) | 405, 871, 1023, 1059, 1976, 2307 |
| BsrGI | TGTACA | 4 cut(s) | 1411, 1442, 1679, 2072 |
| BsrI | ACTGG | 2 cut(s) | 1077, 2681 |
| BssECI | CCNNGG | 7 cut(s) | 1220, 1699, 2175, 2371, 2860, 2962, 3064 |
| BssHII | GCGCGC | 1 cut(s) | 718 |
| BssNI | GRCGYC | 1 cut(s) | 2955 |
| BssSI | CACGAG | 1 cut(s) | 215 |
| BssT1I | CCWWGG | 3 cut(s) | 1220, 1699, 2860 |
| Bst2BI | CACGAG | 1 cut(s) | 215 |
| Bst2UI | CCWGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| Bst4CI | ACNGT | 9 cut(s) | 129, 1679, 2379, 2473, 2564, 2603, 2636, 2923, 3054 |
| Bst6I | CTCTTC | 5 cut(s) | 803, 900, 1183, 2784, 2895 |
| BstACI | GRCGYC | 1 cut(s) | 2955 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 170 |
| BstAUI | TGTACA | 4 cut(s) | 1411, 1442, 1679, 2072 |
| BstBI | TTCGAA | 1 cut(s) | 667 |
| BstC8I | GCNNGC | 4 cut(s) | 720, 759, 810, 2992 |
| BstDSI | CCRYGG | 2 cut(s) | 1699, 2962 |
| BstFNI | CGCG | 1 cut(s) | 720 |
| BstHHI | GCGC | 2 cut(s) | 720, 722 |
| BstMAI | GTCTC | 6 cut(s) | 1543, 1717, 1880, 1978, 2084, 2883 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 170, 179, 1225, 2436, 2445 |
| BstNI | CCWGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| BstNSI | RCATGY | 3 cut(s) | 761, 1318, 1324 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 217 |
| BstSCI | CCNGG | 6 cut(s) | 688, 2174, 2370, 2425, 2641, 3064 |
| BstSLI | GKGCMC | 1 cut(s) | 1328 |
| BstUI | CGCG | 1 cut(s) | 720 |
| BstV1I | GCAGC | 2 cut(s) | 465, 2999 |
| BstV2I | GAAGAC | 4 cut(s) | 37, 404, 2661, 3018 |
| BstX2I | RGATCY | 5 cut(s) | 58, 175, 1424, 1590, 1703 |
| BstYI | RGATCY | 5 cut(s) | 58, 175, 1424, 1590, 1703 |
| Bsu15I | ATCGAT | 1 cut(s) | 1119 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1760 |
| BsuRI | GGCC | 3 cut(s) | 498, 819, 2430 |
| BsuTUI | ATCGAT | 1 cut(s) | 1119 |
| BtgI | CCRYGG | 2 cut(s) | 1699, 2962 |
| BtgZI | GCGATG | 1 cut(s) | 2721 |
| BtrI | CACGTC | 1 cut(s) | 55 |
| BtsIMutI | CAGTG | 1 cut(s) | 2674 |
| BveI | ACCTGC | 1 cut(s) | 2767 |
| Cac8I | GCNNGC | 4 cut(s) | 720, 759, 810, 2992 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2377 |
| CciI | TCATGA | 1 cut(s) | 294 |
| CfoI | GCGC | 2 cut(s) | 720, 722 |
| Cfr13I | GGNCC | 2 cut(s) | 2454, 3050 |
| ClaI | ATCGAT | 1 cut(s) | 1119 |
| CseI | GACGC | 1 cut(s) | 2944 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1010, 1045 |
| DriI | GACNNNNNGTC | 1 cut(s) | 87 |
| EaeI | YGGCCR | 1 cut(s) | 817 |
| Eam1104I | CTCTTC | 5 cut(s) | 803, 900, 1183, 2784, 2895 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 87 |
| EarI | CTCTTC | 5 cut(s) | 803, 900, 1183, 2784, 2895 |
| Ecl136II | GAGCTC | 1 cut(s) | 796 |
| Eco130I | CCWWGG | 3 cut(s) | 1220, 1699, 2860 |
| Eco24I | GRGCYC | 1 cut(s) | 798 |
| Eco32I | GATATC | 3 cut(s) | 2122, 2736, 2917 |
| Eco47I | GGWCC | 2 cut(s) | 2454, 3050 |
| Eco53kI | GAGCTC | 1 cut(s) | 796 |
| Eco57I | CTGAAG | 1 cut(s) | 784 |
| Eco81I | CCTNAGG | 1 cut(s) | 1760 |
| Eco88I | CYCGRG | 1 cut(s) | 2499 |
| EcoICRI | GAGCTC | 1 cut(s) | 796 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2454 |
| EcoRI | GAATTC | 1 cut(s) | 1896 |
| EcoRII | CCWGG | 6 cut(s) | 688, 2174, 2370, 2425, 2641, 3064 |
| EcoRV | GATATC | 3 cut(s) | 2122, 2736, 2917 |
| EcoT14I | CCWWGG | 3 cut(s) | 1220, 1699, 2860 |
| EcoT22I | ATGCAT | 3 cut(s) | 1369, 1948, 2135 |
| EcoT38I | GRGCYC | 1 cut(s) | 798 |
| ErhI | CCWWGG | 3 cut(s) | 1220, 1699, 2860 |
| Esp3I | CGTCTC | 1 cut(s) | 2883 |
| FaqI | GGGAC | 4 cut(s) | 1163, 2388, 2879, 3063 |
| FauI | CCCGC | 1 cut(s) | 1374 |
| FbaI | TGATCA | 2 cut(s) | 2271, 2689 |
| FblI | GTMKAC | 2 cut(s) | 271, 1674 |
| Fnu4HI | GCNGC | 2 cut(s) | 454, 2988 |
| FriOI | GRGCYC | 1 cut(s) | 798 |
| Fsp4HI | GCNGC | 2 cut(s) | 454, 2988 |
| GlaI | GCGC | 2 cut(s) | 719, 721 |
| GluI | GCNGC | 2 cut(s) | 454, 2988 |
| HaeIII | GGCC | 3 cut(s) | 498, 819, 2430 |
| HapII | CCGG | 1 cut(s) | 2952 |
| HgaI | GACGC | 1 cut(s) | 2944 |
| HhaI | GCGC | 2 cut(s) | 720, 722 |
| Hin1I | GRCGYC | 1 cut(s) | 2955 |
| Hin6I | GCGC | 2 cut(s) | 718, 720 |
| HinP1I | GCGC | 2 cut(s) | 718, 720 |
| HpaII | CCGG | 1 cut(s) | 2952 |
| HphI | GGTGA | 5 cut(s) | 1144, 2116, 2657, 2974, 2995 |
| Hpy166II | GTNNAC | 4 cut(s) | 272, 1675, 2073, 3057 |
| Hpy188III | TCNNGA | 8 cut(s) | 295, 312, 626, 743, 779, 1267, 1526, 1655 |
| Hpy8I | GTNNAC | 4 cut(s) | 272, 1675, 2073, 3057 |
| Hpy99I | CGWCG | 3 cut(s) | 56, 133, 632 |
| HpyAV | CCTTC | 8 cut(s) | 136, 148, 297, 440, 1292, 2642, 2965, 3040 |
| HpyCH4III | ACNGT | 9 cut(s) | 129, 1679, 2379, 2473, 2564, 2603, 2636, 2923, 3054 |
| HpyCH4IV | ACGT | 3 cut(s) | 54, 2153, 2386 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 170, 179, 1225, 2436, 2445 |
| HpySE526I | ACGT | 3 cut(s) | 54, 2153, 2386 |
| Hsp92I | GRCGYC | 1 cut(s) | 2955 |
| HspAI | GCGC | 2 cut(s) | 718, 720 |
| KpnI | GGTACC | 1 cut(s) | 2102 |
| Ksp22I | TGATCA | 2 cut(s) | 2271, 2689 |
| LguI | GCTCTTC | 3 cut(s) | 803, 900, 2895 |
| LmnI | GCTCC | 4 cut(s) | 608, 793, 2052, 2862 |
| Lsp1109I | GCAGC | 2 cut(s) | 465, 2999 |
| LweI | GCATC | 7 cut(s) | 583, 1152, 1252, 1368, 1755, 1933, 2772 |
| MaeII | ACGT | 3 cut(s) | 54, 2153, 2386 |
| MaeIII | GTNAC | 7 cut(s) | 336, 977, 2238, 2571, 2694, 2923, 2980 |
| MfeI | CAATTG | 2 cut(s) | 1095, 1845 |
| MflI | RGATCY | 5 cut(s) | 58, 175, 1424, 1590, 1703 |
| MhlI | GDGCHC | 3 cut(s) | 798, 1328, 2979 |
| MlsI | TGGCCA | 1 cut(s) | 819 |
| MluNI | TGGCCA | 1 cut(s) | 819 |
| MlyI | GAGTC | 5 cut(s) | 227, 769, 1247, 1862, 2861 |
| MmeI | TCCRAC | 3 cut(s) | 1445, 2280, 2791 |
| Mox20I | TGGCCA | 1 cut(s) | 819 |
| Mph1103I | ATGCAT | 3 cut(s) | 1369, 1948, 2135 |
| MroXI | GAANNNNTTC | 2 cut(s) | 307, 1197 |
| MscI | TGGCCA | 1 cut(s) | 819 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1319, 1784, 2321 |
| Msp20I | TGGCCA | 1 cut(s) | 819 |
| MspA1I | CMGCKG | 2 cut(s) | 23, 1542 |
| MspI | CCGG | 1 cut(s) | 2952 |
| MspR9I | CCNGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| MunI | CAATTG | 2 cut(s) | 1095, 1845 |
| Mva1269I | GAATGC | 4 cut(s) | 307, 1104, 2135, 2536 |
| MvaI | CCWGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| MvnI | CGCG | 1 cut(s) | 720 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 170, 179, 1225, 2436, 2445 |
| NcoI | CCATGG | 1 cut(s) | 1699 |
| NlaIV | GGNNCC | 8 cut(s) | 60, 77, 1705, 2048, 2100, 2424, 2455, 3051 |
| NmuCI | GTSAC | 2 cut(s) | 2571, 2980 |
| NsiI | ATGCAT | 3 cut(s) | 1369, 1948, 2135 |
| NspI | RCATGY | 3 cut(s) | 761, 1318, 1324 |
| NspV | TTCGAA | 1 cut(s) | 667 |
| PaeI | GCATGC | 1 cut(s) | 761 |
| PaeR7I | CTCGAG | 1 cut(s) | 2499 |
| PagI | TCATGA | 1 cut(s) | 294 |
| PaqCI | CACCTGC | 1 cut(s) | 2767 |
| PauI | GCGCGC | 1 cut(s) | 718 |
| PciI | ACATGT | 1 cut(s) | 1320 |
| PciSI | GCTCTTC | 3 cut(s) | 803, 900, 2895 |
| PctI | GAATGC | 4 cut(s) | 307, 1104, 2135, 2536 |
| PdmI | GAANNNNTTC | 2 cut(s) | 307, 1197 |
| PflFI | GACNNNGTC | 1 cut(s) | 29 |
| PfoI | TCCNGGA | 1 cut(s) | 688 |
| PkrI | GCNGC | 2 cut(s) | 455, 2989 |
| PleI | GAGTC | 5 cut(s) | 226, 769, 1247, 1862, 2861 |
| PpsI | GAGTC | 5 cut(s) | 226, 769, 1247, 1862, 2861 |
| PpuMI | RGGWCCY | 1 cut(s) | 2454 |
| PscI | ACATGT | 1 cut(s) | 1320 |
| PshAI | GACNNNNGTC | 1 cut(s) | 217 |
| PshBI | ATTAAT | 1 cut(s) | 1140 |
| PsiI | TTATAA | 2 cut(s) | 423, 2853 |
| Psp124BI | GAGCTC | 1 cut(s) | 798 |
| Psp5II | RGGWCCY | 1 cut(s) | 2454 |
| Psp6I | CCWGG | 6 cut(s) | 688, 2174, 2370, 2425, 2641, 3064 |
| PspGI | CCWGG | 6 cut(s) | 688, 2174, 2370, 2425, 2641, 3064 |
| PspN4I | GGNNCC | 8 cut(s) | 60, 77, 1705, 2048, 2100, 2424, 2455, 3051 |
| PspPI | GGNCC | 2 cut(s) | 2454, 3050 |
| PspPPI | RGGWCCY | 1 cut(s) | 2454 |
| PspXI | VCTCGAGB | 1 cut(s) | 2499 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1377, 1409 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2377 |
| PsuI | RGATCY | 5 cut(s) | 58, 175, 1424, 1590, 1703 |
| PsyI | GACNNNGTC | 1 cut(s) | 29 |
| PteI | GCGCGC | 1 cut(s) | 718 |
| PvuII | CAGCTG | 1 cut(s) | 23 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1319, 1784, 2321 |
| SacI | GAGCTC | 1 cut(s) | 798 |
| SapI | GCTCTTC | 3 cut(s) | 803, 900, 2895 |
| SatI | GCNGC | 2 cut(s) | 454, 2988 |
| Sau96I | GGNCC | 2 cut(s) | 2454, 3050 |
| SchI | GAGTC | 5 cut(s) | 227, 769, 1247, 1862, 2861 |
| ScrFI | CCNGG | 6 cut(s) | 690, 2176, 2372, 2427, 2643, 3066 |
| SduI | GDGCHC | 3 cut(s) | 798, 1328, 2979 |
| SfaNI | GCATC | 7 cut(s) | 583, 1152, 1252, 1368, 1755, 1933, 2772 |
| Sfr274I | CTCGAG | 1 cut(s) | 2499 |
| SfuI | TTCGAA | 1 cut(s) | 667 |
| SinI | GGWCC | 2 cut(s) | 2454, 3050 |
| SlaI | CTCGAG | 1 cut(s) | 2499 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1319, 1784, 2321 |
| SmlI | CTYRAG | 3 cut(s) | 777, 1883, 2499 |
| SmoI | CTYRAG | 3 cut(s) | 777, 1883, 2499 |
| SphI | GCATGC | 1 cut(s) | 761 |
| SsiI | CCGC | 4 cut(s) | 73, 1381, 1542, 2985 |
| SspI | AATATT | 1 cut(s) | 851 |
| SstI | GAGCTC | 1 cut(s) | 798 |
| StyD4I | CCNGG | 6 cut(s) | 688, 2174, 2370, 2425, 2641, 3064 |
| StyI | CCWWGG | 3 cut(s) | 1220, 1699, 2860 |
| TaaI | ACNGT | 9 cut(s) | 129, 1679, 2379, 2473, 2564, 2603, 2636, 2923, 3054 |
| TaiI | ACGT | 3 cut(s) | 57, 2156, 2389 |
| TaqI | TCGA | 9 cut(s) | 131, 313, 462, 627, 667, 867, 1119, 2500, 2839 |
| TaqII | GACCGA | 1 cut(s) | 3012 |
| TatI | WGTACW | 5 cut(s) | 1411, 1442, 1679, 2072, 2226 |
| TscAI | CASTG | 1 cut(s) | 2681 |
| TseFI | GTSAC | 2 cut(s) | 2571, 2980 |
| TseI | GCWGC | 2 cut(s) | 453, 2987 |
| Tsp45I | GTSAC | 2 cut(s) | 2571, 2980 |
| TspDTI | ATGAA | 5 cut(s) | 448, 686, 1757, 2724, 2889 |
| TspGWI | ACGGA | 5 cut(s) | 1286, 1301, 1437, 2335, 2951 |
| TspRI | CASTG | 1 cut(s) | 2681 |
| Tth111I | GACNNNGTC | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 2 cut(s) | 2454, 3050 |
| VspI | ATTAAT | 1 cut(s) | 1140 |
| XapI | RAATTY | 6 cut(s) | 477, 1336, 1436, 1896, 2341, 2680 |
| XbaI | TCTAGA | 1 cut(s) | 1654 |
| XceI | RCATGY | 3 cut(s) | 761, 1318, 1324 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1706 |
| XhoI | CTCGAG | 1 cut(s) | 2499 |
| XmiI | GTMKAC | 2 cut(s) | 271, 1674 |
| XmnI | GAANNNNTTC | 2 cut(s) | 307, 1197 |
| Zsp2I | ATGCAT | 3 cut(s) | 1369, 1948, 2135 |