TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 191 | 3.8e-54 | TIR domain |
| TIR_2 | PF13676 | 25 - 137 | 3.5e-16 | TIR domain |
| NB-ARC | PF00931 | 204 - 373 | 5e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 443 - 513 | 5.4e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 664 - 743 | 5.2e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 776 - 834 | 4.6e-09 | Leucine rich repeat |
| LRR_4 | PF12799 | 801 - 843 | 6.6e-06 | Leucine Rich repeats (2 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 723, 1004, 3411 |
| AatII | GACGTC | 1 cut(s) | 357 |
| Acc36I | ACCTGC | 2 cut(s) | 2260, 3277 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3083 |
| AccI | GTMKAC | 1 cut(s) | 2524 |
| AccII | CGCG | 1 cut(s) | 266 |
| AciI | CCGC | 1 cut(s) | 3375 |
| AclWI | GGATC | 9 cut(s) | 12, 655, 945, 1541, 2935, 3056, 3275, 3288, 3435 |
| AcoI | YGGCCR | 2 cut(s) | 788, 2282 |
| AcsI | RAATTY | 7 cut(s) | 524, 672, 1678, 2080, 2275, 3115, 3548 |
| AcuI | CTGAAG | 6 cut(s) | 486, 1084, 2815, 3062, 3167, 3546 |
| AcyI | GRCGYC | 1 cut(s) | 354 |
| AfaI | GTAC | 6 cut(s) | 1596, 1615, 1655, 1755, 2500, 2660 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 397, 595, 872, 2269, 2852, 3083 |
| AflIII | ACRYGT | 3 cut(s) | 264, 367, 1663 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 265 |
| AhlI | ACTAGT | 1 cut(s) | 2638 |
| AjnI | CCWGG | 5 cut(s) | 594, 1995, 2805, 2866, 3355 |
| AleI | CACNNNNGTG | 1 cut(s) | 2596 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2847, 2879 |
| Alw21I | GWGCWC | 4 cut(s) | 323, 2552, 3035, 3249 |
| Alw26I | GTCTC | 5 cut(s) | 27, 159, 1885, 1996, 3160 |
| AlwI | GGATC | 9 cut(s) | 12, 655, 945, 1541, 2935, 3056, 3275, 3288, 3435 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1996, 2812 |
| Ama87I | CYCGRG | 3 cut(s) | 612, 1550, 2264 |
| AoxI | GGCC | 6 cut(s) | 200, 788, 946, 1630, 2282, 3353 |
| ApeKI | GCWGC | 3 cut(s) | 753, 978, 3252 |
| ApoI | RAATTY | 7 cut(s) | 524, 672, 1678, 2080, 2275, 3115, 3548 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 607, 1182, 1527, 1779, 2464, 3128 |
| AspLEI | GCGC | 1 cut(s) | 218 |
| AspS9I | GGNCC | 2 cut(s) | 946, 3380 |
| AsuC2I | CCSGG | 3 cut(s) | 2265, 2266, 2847 |
| AsuHPI | GGTGA | 7 cut(s) | 106, 1498, 1985, 2583, 2639, 3152, 3319 |
| AsuII | TTCGAA | 1 cut(s) | 3132 |
| AvaI | CYCGRG | 3 cut(s) | 612, 1550, 2264 |
| AvaII | GGWCC | 1 cut(s) | 3380 |
| BaeGI | GKGCMC | 1 cut(s) | 516 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1377, 1410 |
| BamHI | GGATCC | 1 cut(s) | 3280 |
| BanII | GRGCYC | 1 cut(s) | 323 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2383, 2415 |
| BauI | CACGAG | 2 cut(s) | 515, 2529 |
| BbsI | GAAGAC | 3 cut(s) | 67, 458, 1910 |
| Bbv12I | GWGCWC | 4 cut(s) | 323, 2552, 3035, 3249 |
| BbvI | GCAGC | 3 cut(s) | 740, 965, 3264 |
| BccI | CCATC | 9 cut(s) | 227, 441, 638, 1749, 1791, 1930, 2779, 3411, 3488 |
| BceAI | ACGGC | 4 cut(s) | 803, 2297, 3043, 3085 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 462, 496 |
| BciT130I | CCWGG | 5 cut(s) | 596, 1997, 2807, 2868, 3357 |
| BciVI | GTATCC | 3 cut(s) | 1378, 1693, 2626 |
| BclI | TGATCA | 2 cut(s) | 325, 1333 |
| BcnI | CCSGG | 3 cut(s) | 2265, 2266, 2847 |
| BcoDI | GTCTC | 5 cut(s) | 27, 159, 1885, 1996, 3160 |
| BcuI | ACTAGT | 1 cut(s) | 2638 |
| BfaI | CTAG | 8 cut(s) | 209, 867, 950, 1535, 2322, 2379, 2639, 3503 |
| BfmI | CTRYAG | 3 cut(s) | 1230, 1879, 2060 |
| BfoI | RGCGCY | 1 cut(s) | 219 |
| BfuAI | ACCTGC | 2 cut(s) | 2260, 3277 |
| BfuI | GTATCC | 3 cut(s) | 1378, 1693, 2626 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3441 |
| BglII | AGATCT | 2 cut(s) | 1932, 2539 |
| BisI | GCNGC | 3 cut(s) | 754, 979, 3253 |
| BlsI | GCNGC | 3 cut(s) | 755, 980, 3254 |
| Bme1390I | CCNGG | 8 cut(s) | 596, 1997, 2265, 2266, 2807, 2847, 2868, 3357 |
| Bme18I | GGWCC | 1 cut(s) | 3380 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 265 |
| BmeT110I | CYCGRG | 3 cut(s) | 612, 1550, 2264 |
| BmgT120I | GGNCC | 2 cut(s) | 946, 3380 |
| BmiI | GGNNCC | 6 cut(s) | 389, 2314, 2736, 2865, 3282, 3382 |
| BmrFI | CCNGG | 8 cut(s) | 596, 1997, 2265, 2266, 2807, 2847, 2868, 3357 |
| BpiI | GAAGAC | 3 cut(s) | 67, 458, 1910 |
| BpmI | CTGGAG | 2 cut(s) | 25, 2018 |
| Bpu14I | TTCGAA | 1 cut(s) | 3132 |
| BpuEI | CTTGAG | 4 cut(s) | 82, 919, 986, 1016 |
| BpuMI | CCSGG | 3 cut(s) | 2265, 2266, 2847 |
| BsaBI | GATNNNNATC | 3 cut(s) | 936, 1455, 2355 |
| BsaHI | GRCGYC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 7 cut(s) | 1551, 2263, 2264, 2285, 2730, 2806, 2944 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 397, 595, 872, 2269, 2852, 3083 |
| Bse1I | ACTGG | 6 cut(s) | 42, 273, 1615, 1975, 2660, 3182 |
| Bse3DI | GCAATG | 1 cut(s) | 2996 |
| Bse8I | GATNNNNATC | 3 cut(s) | 936, 1455, 2355 |
| BseBI | CCWGG | 5 cut(s) | 596, 1997, 2807, 2868, 3357 |
| BseDI | CCNNGG | 7 cut(s) | 1551, 2263, 2264, 2285, 2730, 2806, 2944 |
| BseGI | GGATG | 7 cut(s) | 219, 649, 934, 2802, 3231, 3237, 3499 |
| BseJI | GATNNNNATC | 3 cut(s) | 936, 1455, 2355 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 397, 595, 872, 2269, 2852, 3083 |
| BseMI | GCAATG | 1 cut(s) | 2996 |
| BseMII | CTCAG | 9 cut(s) | 94, 1233, 1312, 1589, 1744, 1957, 2537, 3171, 3207 |
| BseNI | ACTGG | 6 cut(s) | 42, 273, 1615, 1975, 2660, 3182 |
| BseRI | GAGGAG | 3 cut(s) | 28, 201, 2422 |
| BseSI | GKGCMC | 1 cut(s) | 516 |
| BseXI | GCAGC | 3 cut(s) | 740, 965, 3264 |
| BsgI | GTGCAG | 2 cut(s) | 139, 1644 |
| Bsh1236I | CGCG | 1 cut(s) | 266 |
| BshFI | GGCC | 6 cut(s) | 202, 790, 948, 1632, 2284, 3355 |
| BsiHKAI | GWGCWC | 4 cut(s) | 323, 2552, 3035, 3249 |
| BsiHKCI | CYCGRG | 3 cut(s) | 612, 1550, 2264 |
| BsiSI | CCGG | 3 cut(s) | 2265, 2447, 2846 |
| BslFI | GGGAC | 4 cut(s) | 571, 2701, 2823, 3511 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 397, 595, 872, 2269, 2852, 3083 |
| BsmAI | GTCTC | 5 cut(s) | 27, 159, 1885, 1996, 3160 |
| BsmBI | CGTCTC | 2 cut(s) | 27, 159 |
| BsmFI | GGGAC | 4 cut(s) | 571, 2701, 2823, 3511 |
| BsmI | GAATGC | 5 cut(s) | 314, 401, 1024, 1434, 3072 |
| BsnI | GGCC | 6 cut(s) | 202, 790, 948, 1632, 2284, 3355 |
| BsoBI | CYCGRG | 3 cut(s) | 612, 1550, 2264 |
| Bsp119I | TTCGAA | 1 cut(s) | 3132 |
| Bsp1286I | GDGCHC | 5 cut(s) | 323, 516, 2552, 3035, 3249 |
| Bsp1407I | TGTACA | 2 cut(s) | 1753, 2498 |
| Bsp19I | CCATGG | 1 cut(s) | 2730 |
| BspACI | CCGC | 1 cut(s) | 3375 |
| BspANI | GGCC | 6 cut(s) | 202, 790, 948, 1632, 2284, 3355 |
| BspCNI | CTCAG | 9 cut(s) | 93, 1232, 1311, 1590, 1743, 1956, 2538, 3170, 3208 |
| BspFNI | CGCG | 1 cut(s) | 266 |
| BspLI | GGNNCC | 6 cut(s) | 389, 2314, 2736, 2865, 3282, 3382 |
| BspMI | ACCTGC | 2 cut(s) | 2260, 3277 |
| BspPI | GGATC | 9 cut(s) | 12, 655, 945, 1541, 2935, 3056, 3275, 3288, 3435 |
| BspQI | GCTCTTC | 3 cut(s) | 311, 1200, 2472 |
| BspT104I | TTCGAA | 1 cut(s) | 3132 |
| BsrDI | GCAATG | 1 cut(s) | 2996 |
| BsrGI | TGTACA | 2 cut(s) | 1753, 2498 |
| BsrI | ACTGG | 6 cut(s) | 42, 273, 1615, 1975, 2660, 3182 |
| BssECI | CCNNGG | 7 cut(s) | 1551, 2263, 2264, 2285, 2730, 2806, 2944 |
| BssNI | GRCGYC | 1 cut(s) | 354 |
| BssSI | CACGAG | 2 cut(s) | 515, 2529 |
| BssT1I | CCWWGG | 2 cut(s) | 2285, 2730 |
| Bst2BI | CACGAG | 2 cut(s) | 515, 2529 |
| Bst2UI | CCWGG | 5 cut(s) | 596, 1997, 2807, 2868, 3357 |
| Bst4CI | ACNGT | 7 cut(s) | 1280, 1429, 2627, 2683, 2874, 3154, 3320 |
| Bst6I | CTCTTC | 5 cut(s) | 131, 311, 1103, 1200, 2472 |
| BstACI | GRCGYC | 1 cut(s) | 354 |
| BstAUI | TGTACA | 2 cut(s) | 1753, 2498 |
| BstBI | TTCGAA | 1 cut(s) | 3132 |
| BstC8I | GCNNGC | 5 cut(s) | 148, 294, 1110, 2603, 3570 |
| BstDSI | CCRYGG | 1 cut(s) | 2730 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 395 |
| BstF5I | GGATG | 7 cut(s) | 219, 649, 934, 2802, 3231, 3237, 3499 |
| BstFNI | CGCG | 1 cut(s) | 266 |
| BstH2I | RGCGCY | 1 cut(s) | 219 |
| BstHHI | GCGC | 1 cut(s) | 218 |
| BstMAI | GTCTC | 5 cut(s) | 27, 159, 1885, 1996, 3160 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 318, 2460, 3441 |
| BstNI | CCWGG | 5 cut(s) | 596, 1997, 2807, 2868, 3357 |
| BstNSI | RCATGY | 7 cut(s) | 371, 1112, 1362, 1413, 1648, 1667, 2605 |
| BstSCI | CCNGG | 8 cut(s) | 594, 1995, 2263, 2264, 2805, 2845, 2866, 3355 |
| BstSFI | CTRYAG | 3 cut(s) | 1230, 1879, 2060 |
| BstSLI | GKGCMC | 1 cut(s) | 516 |
| BstUI | CGCG | 1 cut(s) | 266 |
| BstV1I | GCAGC | 3 cut(s) | 740, 965, 3264 |
| BstV2I | GAAGAC | 3 cut(s) | 67, 458, 1910 |
| BstX2I | RGATCY | 7 cut(s) | 4, 1546, 1932, 2539, 2940, 3048, 3280 |
| BstYI | RGATCY | 7 cut(s) | 4, 1546, 1932, 2539, 2940, 3048, 3280 |
| BsuI | GTATCC | 3 cut(s) | 1378, 1693, 2626 |
| BsuRI | GGCC | 6 cut(s) | 202, 790, 948, 1632, 2284, 3355 |
| BtgI | CCRYGG | 1 cut(s) | 2730 |
| BtsCI | GGATG | 7 cut(s) | 219, 649, 934, 2802, 3231, 3237, 3499 |
| BtsI | GCAGTG | 1 cut(s) | 129 |
| BtsIMutI | CAGTG | 5 cut(s) | 129, 1285, 2653, 3150, 3325 |
| BveI | ACCTGC | 2 cut(s) | 2260, 3277 |
| Cac8I | GCNNGC | 5 cut(s) | 148, 294, 1110, 2603, 3570 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1996, 2812 |
| CfoI | GCGC | 1 cut(s) | 218 |
| Cfr13I | GGNCC | 2 cut(s) | 946, 3380 |
| Cfr9I | CCCGGG | 1 cut(s) | 2264 |
| CseI | GACGC | 3 cut(s) | 255, 965, 1025 |
| CsiI | ACCWGGT | 1 cut(s) | 594 |
| Csp6I | GTAC | 6 cut(s) | 1595, 1614, 1654, 1754, 2499, 2659 |
| CviQI | GTAC | 6 cut(s) | 1595, 1614, 1654, 1754, 2499, 2659 |
| DraI | TTTAAA | 1 cut(s) | 2169 |
| DriI | GACNNNNNGTC | 1 cut(s) | 265 |
| EaeI | YGGCCR | 2 cut(s) | 788, 2282 |
| Eam1104I | CTCTTC | 5 cut(s) | 131, 311, 1103, 1200, 2472 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 265 |
| EarI | CTCTTC | 5 cut(s) | 131, 311, 1103, 1200, 2472 |
| Ecl136II | GAGCTC | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 2 cut(s) | 2285, 2730 |
| Eco147I | AGGCCT | 1 cut(s) | 1632 |
| Eco24I | GRGCYC | 1 cut(s) | 323 |
| Eco32I | GATATC | 2 cut(s) | 1048, 1457 |
| Eco47I | GGWCC | 1 cut(s) | 3380 |
| Eco53kI | GAGCTC | 1 cut(s) | 321 |
| Eco57I | CTGAAG | 6 cut(s) | 486, 1084, 2815, 3062, 3167, 3546 |
| Eco88I | CYCGRG | 3 cut(s) | 612, 1550, 2264 |
| EcoICRI | GAGCTC | 1 cut(s) | 321 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 395 |
| EcoO109I | RGGNCCY | 1 cut(s) | 946 |
| EcoRII | CCWGG | 5 cut(s) | 594, 1995, 2805, 2866, 3355 |
| EcoRV | GATATC | 2 cut(s) | 1048, 1457 |
| EcoT14I | CCWWGG | 2 cut(s) | 2285, 2730 |
| EcoT22I | ATGCAT | 4 cut(s) | 634, 1411, 1497, 1711 |
| EcoT38I | GRGCYC | 1 cut(s) | 323 |
| ErhI | CCWWGG | 2 cut(s) | 2285, 2730 |
| Esp3I | CGTCTC | 2 cut(s) | 27, 159 |
| FaqI | GGGAC | 4 cut(s) | 571, 2701, 2823, 3511 |
| FauNDI | CATATG | 3 cut(s) | 2127, 2230, 2983 |
| FbaI | TGATCA | 2 cut(s) | 325, 1333 |
| FblI | GTMKAC | 1 cut(s) | 2524 |
| Fnu4HI | GCNGC | 3 cut(s) | 754, 979, 3253 |
| FokI | GGATG | 7 cut(s) | 206, 656, 941, 2789, 3238, 3244, 3506 |
| FriOI | GRGCYC | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 3 cut(s) | 754, 979, 3253 |
| FspBI | CTAG | 8 cut(s) | 209, 867, 950, 1535, 2322, 2379, 2639, 3503 |
| GlaI | GCGC | 1 cut(s) | 217 |
| GluI | GCNGC | 3 cut(s) | 754, 979, 3253 |
| GsuI | CTGGAG | 2 cut(s) | 25, 2018 |
| HaeII | RGCGCY | 1 cut(s) | 219 |
| HaeIII | GGCC | 6 cut(s) | 202, 790, 948, 1632, 2284, 3355 |
| HapII | CCGG | 3 cut(s) | 2265, 2447, 2846 |
| HgaI | GACGC | 3 cut(s) | 255, 965, 1025 |
| HhaI | GCGC | 1 cut(s) | 218 |
| Hin1I | GRCGYC | 1 cut(s) | 354 |
| Hin6I | GCGC | 1 cut(s) | 216 |
| HinP1I | GCGC | 1 cut(s) | 216 |
| HincII | GTYRAC | 4 cut(s) | 358, 955, 3022, 3544 |
| HindII | GTYRAC | 4 cut(s) | 358, 955, 3022, 3544 |
| HindIII | AAGCTT | 3 cut(s) | 30, 2026, 2108 |
| HpaII | CCGG | 3 cut(s) | 2265, 2447, 2846 |
| HphI | GGTGA | 7 cut(s) | 106, 1498, 1985, 2583, 2639, 3152, 3319 |
| Hpy99I | CGWCG | 4 cut(s) | 173, 271, 301, 356 |
| HpyAV | CCTTC | 8 cut(s) | 1172, 1375, 1622, 1680, 2604, 3128, 3215, 3394 |
| HpyCH4III | ACNGT | 7 cut(s) | 1280, 1429, 2627, 2683, 2874, 3154, 3320 |
| HpyCH4IV | ACGT | 2 cut(s) | 354, 1558 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 318, 2460, 3441 |
| HpySE526I | ACGT | 2 cut(s) | 354, 1558 |
| Hsp92I | GRCGYC | 1 cut(s) | 354 |
| HspAI | GCGC | 1 cut(s) | 216 |
| Ksp22I | TGATCA | 2 cut(s) | 325, 1333 |
| LguI | GCTCTTC | 3 cut(s) | 311, 1200, 2472 |
| LmnI | GCTCC | 4 cut(s) | 188, 387, 1907, 2409 |
| Lsp1109I | GCAGC | 3 cut(s) | 740, 965, 3264 |
| MabI | ACCWGGT | 1 cut(s) | 594 |
| MaeI | CTAG | 8 cut(s) | 209, 867, 950, 1535, 2322, 2379, 2639, 3503 |
| MaeII | ACGT | 2 cut(s) | 354, 1558 |
| MfeI | CAATTG | 1 cut(s) | 1623 |
| MflI | RGATCY | 7 cut(s) | 4, 1546, 1932, 2539, 2940, 3048, 3280 |
| MhlI | GDGCHC | 5 cut(s) | 323, 516, 2552, 3035, 3249 |
| MluI | ACGCGT | 1 cut(s) | 264 |
| MlyI | GAGTC | 4 cut(s) | 1577, 1924, 2624, 3546 |
| MmeI | TCCRAC | 5 cut(s) | 247, 580, 2210, 2550, 3101 |
| Mph1103I | ATGCAT | 4 cut(s) | 634, 1411, 1497, 1711 |
| MroXI | GAANNNNTTC | 6 cut(s) | 607, 1182, 1527, 1779, 2464, 3128 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1649, 2040, 2126, 2596, 2744, 2820 |
| MspA1I | CMGCKG | 1 cut(s) | 3524 |
| MspI | CCGG | 3 cut(s) | 2265, 2447, 2846 |
| MspR9I | CCNGG | 8 cut(s) | 596, 1997, 2265, 2266, 2807, 2847, 2868, 3357 |
| MunI | CAATTG | 1 cut(s) | 1623 |
| Mva1269I | GAATGC | 5 cut(s) | 314, 401, 1024, 1434, 3072 |
| MvaI | CCWGG | 5 cut(s) | 596, 1997, 2807, 2868, 3357 |
| MvnI | CGCG | 1 cut(s) | 266 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 318, 2460, 3441 |
| NciI | CCSGG | 3 cut(s) | 2265, 2266, 2847 |
| NcoI | CCATGG | 1 cut(s) | 2730 |
| NdeI | CATATG | 3 cut(s) | 2127, 2230, 2983 |
| NlaIV | GGNNCC | 6 cut(s) | 389, 2314, 2736, 2865, 3282, 3382 |
| NmuCI | GTSAC | 6 cut(s) | 56, 363, 1973, 2589, 2627, 3148 |
| NsiI | ATGCAT | 4 cut(s) | 634, 1411, 1497, 1711 |
| NspI | RCATGY | 7 cut(s) | 371, 1112, 1362, 1413, 1648, 1667, 2605 |
| NspV | TTCGAA | 1 cut(s) | 3132 |
| OliI | CACNNNNGTG | 1 cut(s) | 2596 |
| PaeI | GCATGC | 2 cut(s) | 1112, 2605 |
| PceI | AGGCCT | 1 cut(s) | 1632 |
| PciI | ACATGT | 2 cut(s) | 367, 1663 |
| PciSI | GCTCTTC | 3 cut(s) | 311, 1200, 2472 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 488 |
| PctI | GAATGC | 5 cut(s) | 314, 401, 1024, 1434, 3072 |
| PdmI | GAANNNNTTC | 6 cut(s) | 607, 1182, 1527, 1779, 2464, 3128 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3083 |
| PfoI | TCCNGGA | 2 cut(s) | 2845, 2866 |
| PkrI | GCNGC | 3 cut(s) | 755, 980, 3254 |
| PleI | GAGTC | 4 cut(s) | 1577, 1923, 2624, 3545 |
| PpsI | GAGTC | 4 cut(s) | 1577, 1923, 2624, 3545 |
| PscI | ACATGT | 2 cut(s) | 367, 1663 |
| PsiI | TTATAA | 3 cut(s) | 723, 1004, 3411 |
| Psp124BI | GAGCTC | 1 cut(s) | 323 |
| Psp6I | CCWGG | 5 cut(s) | 594, 1995, 2805, 2866, 3355 |
| PspGI | CCWGG | 5 cut(s) | 594, 1995, 2805, 2866, 3355 |
| PspN4I | GGNNCC | 6 cut(s) | 389, 2314, 2736, 2865, 3282, 3382 |
| PspPI | GGNCC | 2 cut(s) | 946, 3380 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2881, 2913 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1996, 2812 |
| PsuI | RGATCY | 7 cut(s) | 4, 1546, 1932, 2539, 2940, 3048, 3280 |
| PvuII | CAGCTG | 1 cut(s) | 3524 |
| RsaI | GTAC | 6 cut(s) | 1596, 1615, 1655, 1755, 2500, 2660 |
| RsaNI | GTAC | 6 cut(s) | 1595, 1614, 1654, 1754, 2499, 2659 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1649, 2040, 2126, 2596, 2744, 2820 |
| SacI | GAGCTC | 1 cut(s) | 323 |
| SapI | GCTCTTC | 3 cut(s) | 311, 1200, 2472 |
| SatI | GCNGC | 3 cut(s) | 754, 979, 3253 |
| Sau96I | GGNCC | 2 cut(s) | 946, 3380 |
| SchI | GAGTC | 4 cut(s) | 1577, 1924, 2624, 3546 |
| ScrFI | CCNGG | 8 cut(s) | 596, 1997, 2265, 2266, 2807, 2847, 2868, 3357 |
| SduI | GDGCHC | 5 cut(s) | 323, 516, 2552, 3035, 3249 |
| SexAI | ACCWGGT | 1 cut(s) | 594 |
| SfcI | CTRYAG | 3 cut(s) | 1230, 1879, 2060 |
| SfuI | TTCGAA | 1 cut(s) | 3132 |
| SinI | GGWCC | 1 cut(s) | 3380 |
| SmaI | CCCGGG | 1 cut(s) | 2266 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1649, 2040, 2126, 2596, 2744, 2820 |
| SmlI | CTYRAG | 4 cut(s) | 61, 898, 965, 1031 |
| SmoI | CTYRAG | 4 cut(s) | 61, 898, 965, 1031 |
| SpeI | ACTAGT | 1 cut(s) | 2638 |
| SphI | GCATGC | 2 cut(s) | 1112, 2605 |
| SseBI | AGGCCT | 1 cut(s) | 1632 |
| SsiI | CCGC | 1 cut(s) | 3375 |
| SspMI | CTAG | 8 cut(s) | 209, 867, 950, 1535, 2322, 2379, 2639, 3503 |
| SstI | GAGCTC | 1 cut(s) | 323 |
| StuI | AGGCCT | 1 cut(s) | 1632 |
| StyD4I | CCNGG | 8 cut(s) | 594, 1995, 2263, 2264, 2805, 2845, 2866, 3355 |
| StyI | CCWWGG | 2 cut(s) | 2285, 2730 |
| TaaI | ACNGT | 7 cut(s) | 1280, 1429, 2627, 2683, 2874, 3154, 3320 |
| TaiI | ACGT | 2 cut(s) | 357, 1561 |
| TatI | WGTACW | 3 cut(s) | 1594, 1753, 2498 |
| TscAI | CASTG | 5 cut(s) | 136, 1285, 2660, 3157, 3325 |
| TseFI | GTSAC | 6 cut(s) | 56, 363, 1973, 2589, 2627, 3148 |
| TseI | GCWGC | 3 cut(s) | 753, 978, 3252 |
| Tsp45I | GTSAC | 6 cut(s) | 56, 363, 1973, 2589, 2627, 3148 |
| TspGWI | ACGGA | 1 cut(s) | 1030 |
| TspMI | CCCGGG | 1 cut(s) | 2264 |
| TspRI | CASTG | 5 cut(s) | 136, 1285, 2660, 3157, 3325 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3083 |
| VpaK11BI | GGWCC | 1 cut(s) | 3380 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 395 |
| XapI | RAATTY | 7 cut(s) | 524, 672, 1678, 2080, 2275, 3115, 3548 |
| XbaI | TCTAGA | 1 cut(s) | 1534 |
| XceI | RCATGY | 7 cut(s) | 371, 1112, 1362, 1413, 1648, 1667, 2605 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 280 |
| XmaI | CCCGGG | 1 cut(s) | 2264 |
| XmiI | GTMKAC | 1 cut(s) | 2524 |
| XmnI | GAANNNNTTC | 6 cut(s) | 607, 1182, 1527, 1779, 2464, 3128 |
| XspI | CTAG | 8 cut(s) | 209, 867, 950, 1535, 2322, 2379, 2639, 3503 |
| ZraI | GACGTC | 1 cut(s) | 355 |
| Zsp2I | ATGCAT | 4 cut(s) | 634, 1411, 1497, 1711 |