RchiOBHm_Chr1g0348321

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000036
Physical Location & Seq
Forward (+)
41137431 .. 41140606
3176 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57437

Sequence Viewer

Length: 2256 bp
ATGGCACTTGTTACGTCATCAGCTCAAGAAGCTTCTTCTTCCAACGATTCTTCTTCTCGATTCAGTTATCACGTTTTCTTGAGTTTCAGAGGCGAGGAGACTCGCAAGACTTTCACTGACCATCTCTACACAGCCTTGACCAATGCAGGGTTCCGCACTTTCCGAGACGATGATGGGCTTCCCAGAGGAGAAGACATCAAACCAGAACTAGAGAGAGCCATCCAACAGTCAAAAAGTTCTGTCATTGTGTTTTCGAAAGACTACGCTTCTTCCGGATGGTGCCTTGACCAGCTTGTCATGATCCTTCAACGCAAGAAGACCTCATCCAACCATGTTGTCTTACCAGTCTTCTACGATATCGATCCATCTCACGTGAGGAAGCAAACAGGGAGTGTTGGAAAAGCATTTGCTAAACATCAGAAAAAGCAATCACCGGAGAAGTTGAATAGATGGAGGGAAGCACTTGCACAAGTTGCAGATCTAGCAGGAATGGTGCTCCAAAATCAAGCAGATGGGCATGAGGCAAAGTTTATCAAGGAAATTGTTAAAGTGATTGAAGACAAACTATGTCGCGTGCCCTTAAGTGTTACACCTTACCTAGTCGGAATTCAATATCAGGTTGAAAACATTAACTTATGGGTACAAGATGGTTCATCTGATGTTGGCATATGGGGAATTTGTGGTATTGGTGGAATAGGAAAGACAACCATTGCACGAGTTGTTTACAATTCTAATTTTGCAAGATTCGAAGGGAGCAGTTTCATTGAAAATGTGAGAGAAATTTCAGAACAACCCAATGGCTTAGTTCAGATACAGAAACAACTCCTTGCGGATATTTTGAGTGGCAGAAAAGTGAAAATACAGAGTGTTAGTGAGGGGATATTGAAGATTAAGGATGTCATAGGATCTAAAAAAGTACTTGTTGTTCTAGACGATATTGATCGTATGGGCCAATTAGATGCAGTACAAAGTATGAGAGATTGTTTCTGTCCAGGAAGTAAAATTATCATAACAACTAGGCATGCAGGGTTGTTAGAGGCTTGTCGAGTTGATAAGGTGCAAATGGTTGAATTTCTAAACGATGTTCATTCACTGGAGCTCTTTAGTTGGCTTTGTTTTCGACAGGACCATCCCATGGAAGGTTACATGGAACTTTCAGAAAGGGTAGTTAACCACTGTGGAGGACTTCCCTTAGCTCTTCAGACTCTGGCTTCTTCTCTATTAGGGAAAAGTTTAGATGTATGGGAAAGTGCACTAAAGAAATTAAAGGCTATTTCATACAGTGAAGTTTTGAGTAAACTAAGAATAAGCTATGATTCTTTACAAGATGACCATGACCAAAATTTGTTCCTCCATATTGCATGTTTCTTTATTGGGAAGGACAAGGATGTCATTGTCAAAATACTAGATGGATGTGATTTCTACACCATTGTTGGCATTCAAAACCTCATTGACAGATGTTTGGTGTTTTGTGATGGTTATAACAAGATGAGGATGCATCAAATGATTAGAGACATGGGAAGAGAAATTGTTCGCCTACAATCAAAGTCTCCTGAGAAACGTAGTAGATTATGGCATCATAGAGATTCTTTCAATGTACTGAGAGAAAAAAATGGTTCAAAAAGAATTGAAGGCCTTGTCCTGAACATGCATTTGTACCTCGAAGACAATCCTTCAAGAAATTCAGATGAGGTAGTGTTGGAAACAAATGCATTTACAAGTATGCGCAAACTAAGATTACTAGAATTTTGTGATGTACAACTGAATGGGAGTTATGAAGAGTTTCCTAAAGGATTAAGATGGTTGTGCTGGGCTGAATTCCCTTTAGATTCTCTTCCGAGTGATTTTCTTTTGGAGTACCTTGTTGTACTTGAAATGCCCAGTAGTAACTTGAGACAGGTGTGGAAGGGAATGAAGAACCAGCTTCCATCATTGAAGATCCTTGATCTCAGCCGTTCCATTTACCTGACTGAAGTTAGTGAGTTTTCGTTAGTCCCCAATCTAGAGAAATTGATTCTTGAACATTGTCCAAGCTTGGTTGAAATCCATGAATCCATTGGAAACCTAGAGAGTCTTGTTTATTTGACTTTGAAAGATTGCAAAACTATTAGCAAGCTTCCAGAGAGTTTTTCTAAGCTTAAATCACTGGAGACGGTTGTTATATCTGGTTGCTCAAATCTGAAAGAGTTTCCAGTGCAGATGAGTAAGATGGAATCTCTGAAAGTGCTTGAAATAGATGAAATTCCCATAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

751

Amino Acids

85.21

Weight (kDa)

6.45

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 192 3.4e-51 TIR domain
TIR_2 PF13676 25 - 122 9.5e-16 TIR domain
NB-ARC PF00931 205 - 375 8.1e-18 NB-ARC domain
WHD_ROQ1 PF23282 444 - 515 1.1e-19 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 668 - 746 4.7e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1482
AasI GACNNNNNNGTC 2 cut(s) 293, 1388
Acc16I TGCGCA 1 cut(s) 1727
AccB1I GGYRCC 1 cut(s) 279
AccB7I CCANNNNNTGG 1 cut(s) 1135
AccII CGCG 1 cut(s) 573
AccIII TCCGGA 1 cut(s) 272
AciI CCGC 2 cut(s) 154, 830
AclWI GGATC 4 cut(s) 295, 356, 913, 1933
AcsI RAATTY 9 cut(s) 606, 675, 780, 1070, 1342, 1681, 1745, 1817, 2241
AcuI CTGAAG 2 cut(s) 1184, 1992
AcvI CACGTG 1 cut(s) 373
AfaI GTAC 8 cut(s) 642, 918, 966, 1599, 1658, 1758, 1859, 1869
AfiI CCNNNNNNNGG 3 cut(s) 147, 1135, 1139
AflII CTTAAG 1 cut(s) 580
AjnI CCWGG 1 cut(s) 991
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
Alw21I GWGCWC 3 cut(s) 498, 1101, 1255
Alw26I GTCTC 6 cut(s) 92, 159, 1506, 1554, 1888, 2144
Alw44I GTGCAC 1 cut(s) 1251
AlwI GGATC 4 cut(s) 295, 356, 913, 1933
AlwNI CAGNNNCTG 1 cut(s) 1207
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 2 cut(s) 949, 1633
ApaLI GTGCAC 1 cut(s) 1251
ApoI RAATTY 9 cut(s) 606, 675, 780, 1070, 1342, 1681, 1745, 1817, 2241
Asp700I GAANNNNTTC 2 cut(s) 1530, 1782
AspLEI GCGC 1 cut(s) 1728
AspS9I GGNCC 2 cut(s) 949, 1126
AsuHPI GGTGA 1 cut(s) 423
AsuII TTCGAA 2 cut(s) 254, 747
AvaII GGWCC 1 cut(s) 1126
BaeGI GKGCMC 2 cut(s) 579, 1255
BanI GGYRCC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 1101
BauI CACGAG 1 cut(s) 714
BbrPI CACGTG 1 cut(s) 373
BbsI GAAGAC 5 cut(s) 198, 323, 340, 564, 1671
Bbv12I GWGCWC 3 cut(s) 498, 1101, 1255
BceAI ACGGC 1 cut(s) 1938
BciT130I CCWGG 1 cut(s) 993
BcoDI GTCTC 6 cut(s) 92, 159, 1506, 1554, 1888, 2144
BfaI CTAG 9 cut(s) 209, 482, 599, 929, 1017, 1406, 1742, 2003, 2066
BfrI CTTAAG 1 cut(s) 580
BglII AGATCT 1 cut(s) 478
BmcAI AGTACT 1 cut(s) 918
Bme1390I CCNGG 1 cut(s) 993
Bme18I GGWCC 1 cut(s) 1126
BmgT120I GGNCC 2 cut(s) 949, 1126
BmiI GGNNCC 2 cut(s) 152, 281
BmrFI CCNGG 1 cut(s) 993
BmrI ACTGGG 1 cut(s) 1875
BmsI GCATC 4 cut(s) 949, 1485, 1507, 1585
BmuI ACTGGG 1 cut(s) 1875
BpiI GAAGAC 5 cut(s) 198, 323, 340, 564, 1671
BpmI CTGGAG 2 cut(s) 1115, 2168
Bpu10I CCTNAGC 1 cut(s) 1192
Bpu14I TTCGAA 2 cut(s) 254, 747
BpuEI CTTGAG 3 cut(s) 9, 100, 1912
Bsa29I ATCGAT 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 373
BsaBI GATNNNNATC 2 cut(s) 360, 939
BsaJI CCNNGG 1 cut(s) 1134
BsaWI WCCGGW 2 cut(s) 272, 433
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 1135, 1139
Bse1I ACTGG 5 cut(s) 344, 1098, 1881, 2151, 2192
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 2 cut(s) 360, 939
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 993
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 1134
BseGI GGATG 8 cut(s) 219, 281, 323, 901, 1129, 1393, 1418, 1500
BseJI GATNNNNATC 2 cut(s) 360, 939
BseLI CCNNNNNNNGG 3 cut(s) 147, 1135, 1139
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 3 cut(s) 1545, 1592, 1963
BseNI ACTGG 5 cut(s) 344, 1098, 1881, 2151, 2192
BseRI GAGGAG 2 cut(s) 110, 201
BseSI GKGCMC 2 cut(s) 579, 1255
BseYI CCCAGC 1 cut(s) 1809
BsgI GTGCAG 1 cut(s) 2216
Bsh1236I CGCG 1 cut(s) 573
BshFI GGCC 2 cut(s) 951, 1635
BshNI GGYRCC 1 cut(s) 279
BshVI ATCGAT 1 cut(s) 360
BsiHKAI GWGCWC 3 cut(s) 498, 1101, 1255
BsiSI CCGG 2 cut(s) 273, 434
BslFI GGGAC 1 cut(s) 1979
BslI CCNNNNNNNGG 3 cut(s) 147, 1135, 1139
BsmAI GTCTC 6 cut(s) 92, 159, 1506, 1554, 1888, 2144
BsmBI CGTCTC 2 cut(s) 159, 2144
BsmFI GGGAC 1 cut(s) 1979
BsmI GAATGC 1 cut(s) 1437
BsnI GGCC 2 cut(s) 951, 1635
Bsp119I TTCGAA 2 cut(s) 254, 747
Bsp1286I GDGCHC 4 cut(s) 498, 579, 1101, 1255
Bsp13I TCCGGA 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 1756
Bsp143I GATC 7 cut(s) 300, 361, 478, 905, 940, 1938, 1945
Bsp19I CCATGG 1 cut(s) 1134
BspACI CCGC 2 cut(s) 154, 830
BspANI GGCC 2 cut(s) 951, 1635
BspCNI CTCAG 3 cut(s) 1546, 1593, 1962
BspDI ATCGAT 1 cut(s) 360
BspEI TCCGGA 1 cut(s) 272
BspFNI CGCG 1 cut(s) 573
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 152, 281
BspPI GGATC 4 cut(s) 295, 356, 913, 1933
BspQI GCTCTTC 1 cut(s) 1203
BspT104I TTCGAA 2 cut(s) 254, 747
BspT107I GGYRCC 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 1756
BsrI ACTGG 5 cut(s) 344, 1098, 1881, 2151, 2192
BssECI CCNNGG 1 cut(s) 1134
BssMI GATC 7 cut(s) 300, 361, 478, 905, 940, 1938, 1945
BssSI CACGAG 1 cut(s) 714
BssT1I CCWWGG 1 cut(s) 1134
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 993
Bst4CI ACNGT 4 cut(s) 228, 1178, 1283, 2155
Bst6I CTCTTC 4 cut(s) 1203, 1516, 1773, 1839
BstAFI CTTAAG 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 1756
BstBAI YACGTR 1 cut(s) 373
BstBI TTCGAA 2 cut(s) 254, 747
BstC8I GCNNGC 3 cut(s) 575, 1023, 2114
BstDEI CTNAG 8 cut(s) 802, 1192, 1301, 1554, 1601, 1733, 1949, 2133
BstDSI CCRYGG 1 cut(s) 1134
BstF5I GGATG 8 cut(s) 219, 281, 323, 901, 1129, 1393, 1418, 1500
BstFNI CGCG 1 cut(s) 573
BstHHI GCGC 1 cut(s) 1728
BstKTI GATC 7 cut(s) 303, 364, 481, 908, 943, 1941, 1948
BstMAI GTCTC 6 cut(s) 92, 159, 1506, 1554, 1888, 2144
BstMBI GATC 7 cut(s) 300, 361, 478, 905, 940, 1938, 1945
BstMWI GCNNNNNNNGC 3 cut(s) 29, 473, 482
BstNI CCWGG 1 cut(s) 993
BstNSI RCATGY 3 cut(s) 1025, 1365, 1651
BstSCI CCNGG 1 cut(s) 991
BstSLI GKGCMC 2 cut(s) 579, 1255
BstUI CGCG 1 cut(s) 573
BstV2I GAAGAC 5 cut(s) 198, 323, 340, 564, 1671
BstX2I RGATCY 3 cut(s) 478, 905, 1938
BstYI RGATCY 3 cut(s) 478, 905, 1938
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 2 cut(s) 951, 1635
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 1134
BtsCI GGATG 8 cut(s) 219, 281, 323, 901, 1129, 1393, 1418, 1500
BtsIMutI CAGTG 6 cut(s) 114, 1091, 1174, 1288, 2144, 2199
Cac8I GCNNGC 3 cut(s) 575, 1023, 2114
CaiI CAGNNNCTG 1 cut(s) 1207
CciI TCATGA 1 cut(s) 297
CfoI GCGC 1 cut(s) 1728
Cfr13I GGNCC 2 cut(s) 949, 1126
ClaI ATCGAT 1 cut(s) 360
Csp6I GTAC 8 cut(s) 641, 917, 965, 1598, 1657, 1757, 1858, 1868
CviQI GTAC 8 cut(s) 641, 917, 965, 1598, 1657, 1757, 1858, 1868
DdeI CTNAG 8 cut(s) 802, 1192, 1301, 1554, 1601, 1733, 1949, 2133
DpnI GATC 7 cut(s) 302, 363, 480, 907, 942, 1940, 1947
DpnII GATC 7 cut(s) 300, 361, 478, 905, 940, 1938, 1945
DrdI GACNNNNNNGTC 2 cut(s) 293, 1388
DseDI GACNNNNNNGTC 2 cut(s) 293, 1388
Eam1104I CTCTTC 4 cut(s) 1203, 1516, 1773, 1839
EarI CTCTTC 4 cut(s) 1203, 1516, 1773, 1839
Ecl136II GAGCTC 1 cut(s) 1099
Eco130I CCWWGG 1 cut(s) 1134
Eco147I AGGCCT 1 cut(s) 1635
Eco24I GRGCYC 1 cut(s) 1101
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 1126
Eco53kI GAGCTC 1 cut(s) 1099
Eco57I CTGAAG 2 cut(s) 1184, 1992
Eco72I CACGTG 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 1099
EcoRI GAATTC 2 cut(s) 606, 1817
EcoRII CCWGG 1 cut(s) 991
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 1134
EcoT22I ATGCAT 3 cut(s) 1500, 1653, 1714
EcoT38I GRGCYC 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 1134
Esp3I CGTCTC 2 cut(s) 159, 2144
FaqI GGGAC 1 cut(s) 1979
FauNDI CATATG 1 cut(s) 668
FokI GGATG 8 cut(s) 206, 288, 310, 908, 1116, 1400, 1425, 1507
FriOI GRGCYC 1 cut(s) 1101
FspBI CTAG 9 cut(s) 209, 482, 599, 929, 1017, 1406, 1742, 2003, 2066
FspI TGCGCA 1 cut(s) 1727
GlaI GCGC 1 cut(s) 1727
GsaI CCCAGC 1 cut(s) 1813
GsuI CTGGAG 2 cut(s) 1115, 2168
HaeIII GGCC 2 cut(s) 951, 1635
HapII CCGG 2 cut(s) 273, 434
HhaI GCGC 1 cut(s) 1728
Hin6I GCGC 1 cut(s) 1726
HinP1I GCGC 1 cut(s) 1726
HincII GTYRAC 1 cut(s) 1171
HindII GTYRAC 1 cut(s) 1171
HindIII AAGCTT 4 cut(s) 30, 2032, 2114, 2135
HpaI GTTAAC 1 cut(s) 1171
HpaII CCGG 2 cut(s) 273, 434
HphI GGTGA 1 cut(s) 423
Hpy166II GTNNAC 4 cut(s) 724, 1171, 1253, 1298
Hpy8I GTNNAC 4 cut(s) 724, 1171, 1253, 1298
HpyAV CCTTC 7 cut(s) 314, 743, 1133, 1372, 1625, 1683, 1900
HpyCH4III ACNGT 4 cut(s) 228, 1178, 1283, 2155
HpyCH4IV ACGT 4 cut(s) 14, 72, 372, 1561
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 473, 482
HpyF3I CTNAG 8 cut(s) 802, 1192, 1301, 1554, 1601, 1733, 1949, 2133
HpySE526I ACGT 4 cut(s) 14, 72, 372, 1561
HspAI GCGC 1 cut(s) 1726
Kpn2I TCCGGA 1 cut(s) 272
KspAI GTTAAC 1 cut(s) 1171
Kzo9I GATC 7 cut(s) 300, 361, 478, 905, 940, 1938, 1945
LguI GCTCTTC 1 cut(s) 1203
LmnI GCTCC 3 cut(s) 501, 753, 1096
LweI GCATC 4 cut(s) 949, 1485, 1507, 1585
MaeI CTAG 9 cut(s) 209, 482, 599, 929, 1017, 1406, 1742, 2003, 2066
MaeII ACGT 4 cut(s) 14, 72, 372, 1561
MaeIII GTNAC 4 cut(s) 10, 586, 1142, 1886
MalI GATC 7 cut(s) 302, 363, 480, 907, 942, 1940, 1947
MboI GATC 7 cut(s) 300, 361, 478, 905, 940, 1938, 1945
MflI RGATCY 3 cut(s) 478, 905, 1938
MhlI GDGCHC 4 cut(s) 498, 579, 1101, 1255
MlyI GAGTC 3 cut(s) 94, 1198, 2080
MmeI TCCRAC 6 cut(s) 66, 247, 351, 376, 583, 1680
Mph1103I ATGCAT 3 cut(s) 1500, 1653, 1714
MroI TCCGGA 1 cut(s) 272
MroXI GAANNNNTTC 2 cut(s) 1530, 1782
MseI TTAA 8 cut(s) 546, 581, 630, 891, 1170, 1265, 1796, 2139
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 2 cut(s) 273, 434
MspR9I CCNGG 1 cut(s) 993
Mva1269I GAATGC 1 cut(s) 1437
MvaI CCWGG 1 cut(s) 993
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 3 cut(s) 29, 473, 482
NcoI CCATGG 1 cut(s) 1134
NdeI CATATG 1 cut(s) 668
NdeII GATC 7 cut(s) 300, 361, 478, 905, 940, 1938, 1945
NlaIV GGNNCC 2 cut(s) 152, 281
NsbI TGCGCA 1 cut(s) 1727
NsiI ATGCAT 3 cut(s) 1500, 1653, 1714
NspI RCATGY 3 cut(s) 1025, 1365, 1651
NspV TTCGAA 2 cut(s) 254, 747
PaeI GCATGC 1 cut(s) 1025
PagI TCATGA 1 cut(s) 297
PceI AGGCCT 1 cut(s) 1635
PciSI GCTCTTC 1 cut(s) 1203
PctI GAATGC 1 cut(s) 1437
PdmI GAANNNNTTC 2 cut(s) 1530, 1782
PfeI GAWTC 9 cut(s) 47, 60, 744, 1316, 1586, 1829, 2014, 2051, 2213
PflMI CCANNNNNTGG 1 cut(s) 1135
PfoI TCCNGGA 1 cut(s) 991
PleI GAGTC 3 cut(s) 94, 1198, 2079
PmaCI CACGTG 1 cut(s) 373
PmlI CACGTG 1 cut(s) 373
PpsI GAGTC 3 cut(s) 94, 1198, 2079
Ppu21I YACGTR 1 cut(s) 373
PsiI TTATAA 1 cut(s) 1482
Psp124BI GAGCTC 1 cut(s) 1101
Psp6I CCWGG 1 cut(s) 991
PspCI CACGTG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 1809
PspGI CCWGG 1 cut(s) 991
PspN4I GGNNCC 2 cut(s) 152, 281
PspPI GGNCC 2 cut(s) 949, 1126
PsrI GAACNNNNNNTAC 2 cut(s) 909, 941
PstNI CAGNNNCTG 1 cut(s) 1207
PsuI RGATCY 3 cut(s) 478, 905, 1938
RsaI GTAC 8 cut(s) 642, 918, 966, 1599, 1658, 1758, 1859, 1869
RsaNI GTAC 8 cut(s) 641, 917, 965, 1598, 1657, 1757, 1858, 1868
SacI GAGCTC 1 cut(s) 1101
SapI GCTCTTC 1 cut(s) 1203
SaqAI TTAA 8 cut(s) 546, 581, 630, 891, 1170, 1265, 1796, 2139
Sau3AI GATC 7 cut(s) 300, 361, 478, 905, 940, 1938, 1945
Sau96I GGNCC 2 cut(s) 949, 1126
ScaI AGTACT 1 cut(s) 918
SchI GAGTC 3 cut(s) 94, 1198, 2080
ScrFI CCNGG 1 cut(s) 993
SduI GDGCHC 4 cut(s) 498, 579, 1101, 1255
SfaNI GCATC 4 cut(s) 949, 1485, 1507, 1585
SfuI TTCGAA 2 cut(s) 254, 747
SinI GGWCC 1 cut(s) 1126
SmlI CTYRAG 4 cut(s) 24, 79, 580, 1891
SmoI CTYRAG 4 cut(s) 24, 79, 580, 1891
SphI GCATGC 1 cut(s) 1025
SseBI AGGCCT 1 cut(s) 1635
SsiI CCGC 2 cut(s) 154, 830
SspMI CTAG 9 cut(s) 209, 482, 599, 929, 1017, 1406, 1742, 2003, 2066
SstI GAGCTC 1 cut(s) 1101
StuI AGGCCT 1 cut(s) 1635
StyD4I CCNGG 1 cut(s) 991
StyI CCWWGG 1 cut(s) 1134
TaaI ACNGT 4 cut(s) 228, 1178, 1283, 2155
TaiI ACGT 4 cut(s) 17, 75, 375, 1564
TaqI TCGA 7 cut(s) 58, 254, 360, 747, 1045, 1120, 1662
TatI WGTACW 5 cut(s) 916, 964, 1597, 1756, 1867
TfiI GAWTC 9 cut(s) 47, 60, 744, 1316, 1586, 1829, 2014, 2051, 2213
Tru1I TTAA 8 cut(s) 546, 581, 630, 891, 1170, 1265, 1796, 2139
Tru9I TTAA 8 cut(s) 546, 581, 630, 891, 1170, 1265, 1796, 2139
TscAI CASTG 6 cut(s) 121, 1098, 1181, 1288, 2151, 2199
TspDTI ATGAA 8 cut(s) 642, 751, 1076, 1266, 1791, 1928, 2064, 2253
TspRI CASTG 6 cut(s) 121, 1098, 1181, 1288, 2151, 2199
Van91I CCANNNNNTGG 1 cut(s) 1135
Vha464I CTTAAG 1 cut(s) 580
VneI GTGCAC 1 cut(s) 1251
VpaK11BI GGWCC 1 cut(s) 1126
XapI RAATTY 9 cut(s) 606, 675, 780, 1070, 1342, 1681, 1745, 1817, 2241
XbaI TCTAGA 2 cut(s) 928, 2002
XceI RCATGY 3 cut(s) 1025, 1365, 1651
XcmI CCANNNNNNNNNTGG 1 cut(s) 2054
XmnI GAANNNNTTC 2 cut(s) 1530, 1782
XspI CTAG 9 cut(s) 209, 482, 599, 929, 1017, 1406, 1742, 2003, 2066
ZrmI AGTACT 1 cut(s) 918
Zsp2I ATGCAT 3 cut(s) 1500, 1653, 1714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.