Prupe.6G132100_v2.0.a1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000036
Physical Location & Seq
Reverse (-)
10407420 .. 10411124
3705 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G132100.1

Sequence Viewer

Length: 2763 bp
ATGGTCTTACAAAATCAAGCTGATGGACACGAGTCAAAGTTTATCAACAAGATTGTTCAAGTGATAAGAGAAAAACTAAGGTGTAGACCCCTAAATGTTCCCCACATCATGATCGGAATGCATTCTCGAGTCAACGAACTGAATTTATGGTTACAAGATGGATCAGATGATGTTGGCATATTTGTAATTTATGGAATGAGTGGAATAGGGAAGACAACAATTGCAAAGTTTGTTTATAATACAAACTTCAGAAGATTTGAAGGAAGCAGCTTCATTGAAAACATTAGAGAAATTTCACAACAACCTAATGGCCTAGTTCAAATACAAATACAACTTCTTTCTGATATTTTCATTGGGAGAAAAGTAAAAATACACAGTGTTAGTGAGGGAATGACTGAGATTGAAGATGCAATAAGCTCTAAAAGGGTTTTTCTTGTTCTCGACAATGTGGATCATATTAGCCAATTAGATGCAGTGATTGGGATGAAAGATAAGCGTGCAGGATTGTTAAAGGCTCATCAAGTTACTAAGGTGCATGCAGTTCAATTTTTGGATAACAAAGAATCATTGGAGCTCTTAAGTTGGCATGCTTTTGGCCAAGACCATCCCATTGAAGATTACATAGAATGTTCAGAGAAGCTAGTCGATCATTGCGGAGGACTTCCATTAGCTCTTCAAGTTTTAGGTTCTTCGTTGCTGGGGGAAAGTATAGGTGTATGGAAAAGTGCGTTGGAGAAATTAAAAGCAATTCCAAATGGTGAAATAGTAAATAAGCTGAGAGTAAGTTACGATTCTTTGCAAGATGACCATGACCAAAAATTATTCCTCCACATTGCTTACGGATGTGATTTCTATCCAATTGTTGGCATTCAAAATCTCATCGATATATGTTTGGTGATTATTGATGAATGGGACAAGGTGCAAATGCATGACCTGATTCGTGGAATGGGAAGAGAAATTGTTCGCCTAGAATCAAATGAGCCTTGGAAGCGTAGTAGAGTATGGCATCATAAGGACTCCTTCAAAATCTTGATGGAAAAGAAGGGTACAGGAAAAATTGAAGGTCTTGTCCTCGACATGCACATGTGCCCTACTATAAACTCAAATCAGAAAGTCTTGGAAACCAGTGCATTTTCAAGGATGTGGGAACTAAAACTACTCCATCTTAGTCATGTACAACTTAACGGATCTTATGTAGAATTTTGTACAGGGCTACGATGGTTGTGTTGGACTAAGTTTCCTTTGGATTCTATACCCATTGATTTTCCTTTGGAAAGCGTTATTATTCTTGAAATGCAATACAGCGGTCTGAGACAAGTATTCAAGGGAGCAAAATATCTTCCGTCCTTGAAGATCCTTGATCTCAACCGTTCTCATTCCCTTACAGAAACCATTGACTTCTCATATTGCCCAAATCTAGAGAAATTGGTTCTAGTAGACTGCACAAGCCTGATTTATGTCCATGGATCCATTGGAGACCTAGAGAGACTTATTTACTTGAATATGAAAGATTGCAAAAAGATTAGGATGCTTCCCAAGAACATTTGTATGCTAAAATCACTTGAAACATTTATTATATCTGGTTGCTCAAATCTGAAAGAGTTCTCAATTGAGATGTTGAGGAACATGGACTCGTTAAAAGTGCTTGAGACAGATGGAATTCCGATAAGTGAATTATGGCTAGAAAGAAGTTCGAGTATCTTGGGTTCTTTACCATGCTCTTTAGTAGAATTAAGTCTTTGGGAGTGCAATCTTTCGGATGATGCCTTTCCTATGGATTTTAGTAATTTGTTCTCATTGAAGAGACTAAATCTAGGGAATAATCCAATTGGTAGCCTACCAAATTGTGTCAAAGGATTAGCAAGGCTCGATGCACTCTCTTTTAGTAAGTGTACAAGTCTCAAATCGCTTCTCGGGTTACCAAAACTAGGGTTCTTGGATATCATAGATTGCATATCATTGGAGAAAATAACATATCAATTCTTTCAGTTAGAGTCGTCAAGCTTTCAAGTTCGCAACTACAACCTAGTTGAGTGGCAGTACAGGTATAAGTTACAACCCATTGGTGGAGTTGATGTAGAAATGATCAACCTCTTGGGATTGTGCAACTTGTTGGAATCAATGGCAACCATTCGGATGCACAAACCATCTTATATTTCAGAAAAGGATGATTGGAGTCCCGTCCAGGGACTGTACGAAGATGGTAAATTCAGCACATTTTTTGGTGGGAATGAGGTTCCAGGCCAATTCAGCCATAAAAGTAGAGGGTCCTCAATATCTTTTACCATGCCTTTGCTTGATAATCACAGAATTAAAGGCTTGATCGTCTGTGCTGTCTATGTGAGTTATGGCTCTGATTTTCCTTACAATCATATGACTGGTTTTCAACGTTATCGTGGGCTTATGGATACGATTATTAGAGTCAGAAATAAGAGCAAGGGTCTGAAGTGGTACTATATGCCATCATTCTTCGGCATTCCAGGTGAAGGAGAAGACATGATATGGTTAAGCCACTGGCAGTTTAAGGATGAGCACTTGGAAGGTTGCGATCAAGTGGTTGTTTCGGTACGTATGGAACATTGCTTTCAGGTAAAGGAGTTGGGGATCCAGTTTGTGCAGGTTGAACAACAGAGTACCACCATTTATCCTGTTTATCCATGGGTCTTGAATCACCCAGGAGAATACTTGTTCAATGATGAAGATACAAGAGGTGTGTTGTTTATTGACGCATTTGATGATTTTATCCAACTATTTCCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

921

Amino Acids

105.23

Weight (kDa)

5.99

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 2608
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 2 cut(s) 85, 1437
AciI CCGC 2 cut(s) 654, 1305
AclI AACGTT 1 cut(s) 2389
AclWI GGATC 8 cut(s) 169, 459, 1195, 1348, 1461, 1474, 2599, 2612
AcoI YGGCCR 1 cut(s) 595
AcsI RAATTY 5 cut(s) 142, 291, 1199, 1659, 2207
AcuI CTGAAG 2 cut(s) 232, 2465
AfaI GTAC 9 cut(s) 1048, 1176, 1207, 1894, 2042, 2195, 2453, 2568, 2635
AfiI CCNNNNNNNGG 5 cut(s) 863, 1928, 2066, 2186, 2486
AflII CTTAAG 1 cut(s) 577
AflIII ACRYGT 1 cut(s) 1083
AjnI CCWGG 4 cut(s) 2184, 2239, 2479, 2674
AjuI GAANNNNNNNTTGG 2 cut(s) 713, 745
AluBI AGCT 8 cut(s) 20, 270, 417, 574, 640, 671, 775, 2004
AluI AGCT 8 cut(s) 20, 270, 417, 574, 640, 671, 775, 2004
Alw21I GWGCWC 2 cut(s) 576, 2535
Alw26I GTCTC 6 cut(s) 1306, 1470, 1480, 1643, 1798, 1904
AlwI GGATC 8 cut(s) 169, 459, 1195, 1348, 1461, 1474, 2599, 2612
AlwNI CAGNNNCTG 1 cut(s) 2191
Ama87I CYCGRG 2 cut(s) 126, 1913
AoxI GGCC 3 cut(s) 310, 595, 2242
ApeKI GCWGC 1 cut(s) 267
ApoI RAATTY 5 cut(s) 142, 291, 1199, 1659, 2207
Asp700I GAANNNNTTC 3 cut(s) 121, 960, 1601
AspS9I GGNCC 1 cut(s) 2268
AsuHPI GGTGA 4 cut(s) 770, 907, 2495, 2663
AvaI CYCGRG 2 cut(s) 126, 1913
AvaII GGWCC 1 cut(s) 2268
BaeGI GKGCMC 1 cut(s) 1091
BalI TGGCCA 1 cut(s) 597
BamHI GGATCC 2 cut(s) 1466, 2604
BanII GRGCYC 1 cut(s) 576
BauI CACGAG 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 218, 2499
Bbv12I GWGCWC 2 cut(s) 576, 2535
BbvI GCAGC 1 cut(s) 279
BciT130I CCWGG 4 cut(s) 2186, 2241, 2481, 2676
BciVI GTATCC 1 cut(s) 2401
BclI TGATCA 1 cut(s) 2085
BcoDI GTCTC 6 cut(s) 1306, 1470, 1480, 1643, 1798, 1904
BfrI CTTAAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 2608
BfuI GTATCC 1 cut(s) 2401
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 4 cut(s) 2186, 2241, 2481, 2676
Bme18I GGWCC 1 cut(s) 2268
BmeT110I CYCGRG 2 cut(s) 126, 1913
BmgT120I GGNCC 1 cut(s) 2268
BmiI GGNNCC 4 cut(s) 1468, 2238, 2269, 2606
BmrFI CCNGG 4 cut(s) 2186, 2241, 2481, 2676
BmsI GCATC 7 cut(s) 397, 460, 1015, 1518, 1753, 1861, 2127
BoxI GACNNNNGTC 1 cut(s) 31
BpiI GAAGAC 2 cut(s) 218, 2499
BpuEI CTTGAG 1 cut(s) 1667
Bsa29I ATCGAT 1 cut(s) 882
BsaAI YACGTR 1 cut(s) 2570
BsaBI GATNNNNATC 1 cut(s) 852
BsaI GGTCTC 1 cut(s) 1470
BsaJI CCNNGG 5 cut(s) 983, 1462, 2185, 2657, 2674
BsaXI ACNNNNNCTCC 2 cut(s) 2061, 2091
Bsc4I CCNNNNNNNGG 5 cut(s) 863, 1928, 2066, 2186, 2486
Bse1I ACTGG 4 cut(s) 1125, 2383, 2519, 2608
Bse3DI GCAATG 3 cut(s) 649, 831, 2578
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 4 cut(s) 2186, 2241, 2481, 2676
BseCI ATCGAT 1 cut(s) 882
BseDI CCNNGG 5 cut(s) 983, 1462, 2185, 2657, 2674
BseGI GGATG 9 cut(s) 489, 604, 848, 1146, 1533, 1765, 2142, 2173, 2533
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 5 cut(s) 863, 1928, 2066, 2186, 2486
BseMI GCAATG 3 cut(s) 649, 831, 2578
BseMII CTCAG 3 cut(s) 387, 767, 1301
BseNI ACTGG 4 cut(s) 1125, 2383, 2519, 2608
BseSI GKGCMC 1 cut(s) 1091
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 697
BsgI GTGCAG 3 cut(s) 519, 1426, 2636
BshFI GGCC 3 cut(s) 312, 597, 2244
BshVI ATCGAT 1 cut(s) 882
BsiHKAI GWGCWC 2 cut(s) 576, 2535
BsiHKCI CYCGRG 2 cut(s) 126, 1913
BslFI GGGAC 3 cut(s) 926, 2163, 2202
BslI CCNNNNNNNGG 5 cut(s) 863, 1928, 2066, 2186, 2486
BsmAI GTCTC 6 cut(s) 1306, 1470, 1480, 1643, 1798, 1904
BsmFI GGGAC 3 cut(s) 926, 2163, 2202
BsmI GAATGC 4 cut(s) 121, 123, 867, 2475
BsnI GGCC 3 cut(s) 312, 597, 2244
Bso31I GGTCTC 1 cut(s) 1470
BsoBI CYCGRG 2 cut(s) 126, 1913
Bsp1286I GDGCHC 3 cut(s) 576, 1091, 2535
Bsp1407I TGTACA 3 cut(s) 1174, 1205, 1892
Bsp19I CCATGG 2 cut(s) 1462, 2657
BspACI CCGC 2 cut(s) 654, 1305
BspANI GGCC 3 cut(s) 312, 597, 2244
BspCNI CTCAG 3 cut(s) 388, 768, 1302
BspDI ATCGAT 1 cut(s) 882
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 4 cut(s) 1468, 2238, 2269, 2606
BspMI ACCTGC 1 cut(s) 2608
BspPI GGATC 8 cut(s) 169, 459, 1195, 1348, 1461, 1474, 2599, 2612
BspQI GCTCTTC 1 cut(s) 678
BspTI CTTAAG 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 1470
BsrDI GCAATG 3 cut(s) 649, 831, 2578
BsrGI TGTACA 3 cut(s) 1174, 1205, 1892
BsrI ACTGG 4 cut(s) 1125, 2383, 2519, 2608
BssECI CCNNGG 5 cut(s) 983, 1462, 2185, 2657, 2674
BssSI CACGAG 1 cut(s) 29
BssT1I CCWWGG 3 cut(s) 983, 1462, 2657
Bst2BI CACGAG 1 cut(s) 29
Bst2UI CCWGG 4 cut(s) 2186, 2241, 2481, 2676
Bst4CI ACNGT 3 cut(s) 377, 1370, 2193
Bst6I CTCTTC 3 cut(s) 678, 946, 1796
BstAFI CTTAAG 1 cut(s) 577
BstAUI TGTACA 3 cut(s) 1174, 1205, 1892
BstBAI YACGTR 1 cut(s) 2570
BstC8I GCNNGC 3 cut(s) 498, 537, 588
BstDEI CTNAG 7 cut(s) 77, 396, 528, 776, 1166, 1233, 1310
BstDSI CCRYGG 2 cut(s) 1462, 2657
BstEII GGTNACC 1 cut(s) 1917
BstF5I GGATG 9 cut(s) 489, 604, 848, 1146, 1533, 1765, 2142, 2173, 2533
BstMAI GTCTC 6 cut(s) 1306, 1470, 1480, 1643, 1798, 1904
BstMWI GCNNNNNNNGC 2 cut(s) 988, 2250
BstNI CCWGG 4 cut(s) 2186, 2241, 2481, 2676
BstNSI RCATGY 4 cut(s) 539, 590, 1081, 1087
BstPAI GACNNNNGTC 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 1917
BstSCI CCNGG 4 cut(s) 2184, 2239, 2479, 2674
BstSLI GKGCMC 1 cut(s) 1091
BstSNI TACGTA 1 cut(s) 2570
BstV1I GCAGC 1 cut(s) 279
BstV2I GAAGAC 2 cut(s) 218, 2499
BstX2I RGATCY 4 cut(s) 1187, 1353, 1466, 2604
BstYI RGATCY 4 cut(s) 1187, 1353, 1466, 2604
Bsu15I ATCGAT 1 cut(s) 882
BsuI GTATCC 1 cut(s) 2401
BsuRI GGCC 3 cut(s) 312, 597, 2244
BsuTUI ATCGAT 1 cut(s) 882
BtgI CCRYGG 2 cut(s) 1462, 2657
BtsCI GGATG 9 cut(s) 489, 604, 848, 1146, 1533, 1765, 2142, 2173, 2533
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 4 cut(s) 382, 480, 1132, 2512
BveI ACCTGC 1 cut(s) 2608
Cac8I GCNNGC 3 cut(s) 498, 537, 588
CaiI CAGNNNCTG 1 cut(s) 2191
CciI TCATGA 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 2268
ClaI ATCGAT 1 cut(s) 882
CseI GACGC 1 cut(s) 2735
Csp6I GTAC 9 cut(s) 1047, 1175, 1206, 1893, 2041, 2194, 2452, 2567, 2634
CviQI GTAC 9 cut(s) 1047, 1175, 1206, 1893, 2041, 2194, 2452, 2567, 2634
DdeI CTNAG 7 cut(s) 77, 396, 528, 776, 1166, 1233, 1310
EaeI YGGCCR 1 cut(s) 595
Eam1104I CTCTTC 3 cut(s) 678, 946, 1796
EarI CTCTTC 3 cut(s) 678, 946, 1796
Ecl136II GAGCTC 1 cut(s) 574
Eco105I TACGTA 1 cut(s) 2570
Eco130I CCWWGG 3 cut(s) 983, 1462, 2657
Eco24I GRGCYC 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 1470
Eco32I GATATC 1 cut(s) 1942
Eco47I GGWCC 1 cut(s) 2268
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 2 cut(s) 232, 2465
Eco88I CYCGRG 2 cut(s) 126, 1913
Eco91I GGTNACC 1 cut(s) 1917
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 2268
EcoO65I GGTNACC 1 cut(s) 1917
EcoRI GAATTC 1 cut(s) 1659
EcoRII CCWGG 4 cut(s) 2184, 2239, 2479, 2674
EcoRV GATATC 1 cut(s) 1942
EcoT14I CCWWGG 3 cut(s) 983, 1462, 2657
EcoT22I ATGCAT 2 cut(s) 123, 930
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 3 cut(s) 983, 1462, 2657
FalI AAGNNNNNCTT 2 cut(s) 1004, 1036
FaqI GGGAC 3 cut(s) 926, 2163, 2202
FauNDI CATATG 1 cut(s) 2373
FbaI TGATCA 1 cut(s) 2085
FblI GTMKAC 2 cut(s) 85, 1437
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 9 cut(s) 496, 591, 855, 1153, 1540, 1772, 2149, 2180, 2540
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 268
GsaI CCCAGC 1 cut(s) 701
HaeIII GGCC 3 cut(s) 312, 597, 2244
HgaI GACGC 1 cut(s) 2735
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 2002
HphI GGTGA 4 cut(s) 770, 907, 2495, 2663
Hpy166II GTNNAC 4 cut(s) 86, 133, 1438, 1893
Hpy188III TCNNGA 7 cut(s) 109, 126, 440, 1030, 1289, 1418, 2665
Hpy8I GTNNAC 4 cut(s) 86, 133, 1438, 1893
HpyAV CCTTC 6 cut(s) 254, 1030, 1036, 1055, 2480, 2534
HpyCH4III ACNGT 3 cut(s) 377, 1370, 2193
HpyCH4IV ACGT 2 cut(s) 2389, 2569
HpyF10VI GCNNNNNNNGC 2 cut(s) 988, 2250
HpyF3I CTNAG 7 cut(s) 77, 396, 528, 776, 1166, 1233, 1310
HpySE526I ACGT 2 cut(s) 2389, 2569
Ksp22I TGATCA 1 cut(s) 2085
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 2 cut(s) 571, 1328
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 7 cut(s) 397, 460, 1015, 1518, 1753, 1861, 2127
MaeII ACGT 2 cut(s) 2389, 2569
MaeIII GTNAC 5 cut(s) 150, 523, 785, 1917, 2052
MfeI CAATTG 4 cut(s) 219, 858, 1608, 1827
MflI RGATCY 4 cut(s) 1187, 1353, 1466, 2604
MhlI GDGCHC 3 cut(s) 576, 1091, 2535
MlsI TGGCCA 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 597
MlyI GAGTC 7 cut(s) 41, 138, 1010, 1625, 2003, 2185, 2430
MmeI TCCRAC 3 cut(s) 711, 1208, 2094
Mox20I TGGCCA 1 cut(s) 597
Mph1103I ATGCAT 2 cut(s) 123, 930
MroXI GAANNNNTTC 3 cut(s) 121, 960, 1601
MscI TGGCCA 1 cut(s) 597
MseI TTAA 9 cut(s) 509, 578, 740, 1182, 1637, 1733, 2313, 2507, 2523
MslI CAYNNNNRTG 3 cut(s) 1082, 1547, 2135
Msp20I TGGCCA 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 1305
MspCI CTTAAG 1 cut(s) 577
MspR9I CCNGG 4 cut(s) 2186, 2241, 2481, 2676
MunI CAATTG 4 cut(s) 219, 858, 1608, 1827
Mva1269I GAATGC 4 cut(s) 121, 123, 867, 2475
MvaI CCWGG 4 cut(s) 2186, 2241, 2481, 2676
MwoI GCNNNNNNNGC 2 cut(s) 988, 2250
NcoI CCATGG 2 cut(s) 1462, 2657
NdeI CATATG 1 cut(s) 2373
NlaIV GGNNCC 4 cut(s) 1468, 2238, 2269, 2606
NsiI ATGCAT 2 cut(s) 123, 930
NspI RCATGY 4 cut(s) 539, 590, 1081, 1087
PaeI GCATGC 2 cut(s) 539, 590
PaeR7I CTCGAG 1 cut(s) 126
PagI TCATGA 1 cut(s) 108
PciI ACATGT 1 cut(s) 1083
PciSI GCTCTTC 1 cut(s) 678
PctI GAATGC 4 cut(s) 121, 123, 867, 2475
PdmI GAANNNNTTC 3 cut(s) 121, 960, 1601
PfeI GAWTC 7 cut(s) 563, 791, 937, 971, 1247, 2117, 2668
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 1 cut(s) 269
PleI GAGTC 7 cut(s) 40, 137, 1010, 1625, 2002, 2184, 2429
PpsI GAGTC 7 cut(s) 40, 137, 1010, 1625, 2002, 2184, 2429
Ppu21I YACGTR 1 cut(s) 2570
PpuMI RGGWCCY 1 cut(s) 2268
PscI ACATGT 1 cut(s) 1083
PshAI GACNNNNGTC 1 cut(s) 31
PsiI TTATAA 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 576
Psp1406I AACGTT 1 cut(s) 2389
Psp5II RGGWCCY 1 cut(s) 2268
Psp6I CCWGG 4 cut(s) 2184, 2239, 2479, 2674
PspEI GGTNACC 1 cut(s) 1917
PspFI CCCAGC 1 cut(s) 697
PspGI CCWGG 4 cut(s) 2184, 2239, 2479, 2674
PspN4I GGNNCC 4 cut(s) 1468, 2238, 2269, 2606
PspPI GGNCC 1 cut(s) 2268
PspPPI RGGWCCY 1 cut(s) 2268
PsrI GAACNNNNNNTAC 4 cut(s) 1140, 1172, 1690, 1722
PstNI CAGNNNCTG 1 cut(s) 2191
PsuI RGATCY 4 cut(s) 1187, 1353, 1466, 2604
RsaI GTAC 9 cut(s) 1048, 1176, 1207, 1894, 2042, 2195, 2453, 2568, 2635
RsaNI GTAC 9 cut(s) 1047, 1175, 1206, 1893, 2041, 2194, 2452, 2567, 2634
RseI CAYNNNNRTG 3 cut(s) 1082, 1547, 2135
SacI GAGCTC 1 cut(s) 576
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 9 cut(s) 509, 578, 740, 1182, 1637, 1733, 2313, 2507, 2523
SatI GCNGC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 2268
SchI GAGTC 7 cut(s) 41, 138, 1010, 1625, 2003, 2185, 2430
ScrFI CCNGG 4 cut(s) 2186, 2241, 2481, 2676
SduI GDGCHC 3 cut(s) 576, 1091, 2535
SfaNI GCATC 7 cut(s) 397, 460, 1015, 1518, 1753, 1861, 2127
Sfr274I CTCGAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 2268
SlaI CTCGAG 1 cut(s) 126
SmiMI CAYNNNNRTG 3 cut(s) 1082, 1547, 2135
SmlI CTYRAG 3 cut(s) 126, 577, 1646
SmoI CTYRAG 3 cut(s) 126, 577, 1646
SnaBI TACGTA 1 cut(s) 2570
SphI GCATGC 2 cut(s) 539, 590
SsiI CCGC 2 cut(s) 654, 1305
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 4 cut(s) 2184, 2239, 2479, 2674
StyI CCWWGG 3 cut(s) 983, 1462, 2657
TaaI ACNGT 3 cut(s) 377, 1370, 2193
TaiI ACGT 2 cut(s) 2392, 2572
TaqI TCGA 7 cut(s) 127, 441, 645, 882, 1074, 1694, 1869
TatI WGTACW 4 cut(s) 1174, 1205, 1892, 2040
TfiI GAWTC 7 cut(s) 563, 791, 937, 971, 1247, 2117, 2668
Tru1I TTAA 9 cut(s) 509, 578, 740, 1182, 1637, 1733, 2313, 2507, 2523
Tru9I TTAA 9 cut(s) 509, 578, 740, 1182, 1637, 1733, 2313, 2507, 2523
TscAI CASTG 4 cut(s) 382, 480, 1132, 2519
TseI GCWGC 1 cut(s) 267
TspDTI ATGAA 6 cut(s) 262, 340, 500, 921, 1520, 2712
TspGWI ACGGA 3 cut(s) 855, 1200, 1332
TspRI CASTG 4 cut(s) 382, 480, 1132, 2519
Van91I CCANNNNNTGG 1 cut(s) 863
Vha464I CTTAAG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 2268
XapI RAATTY 5 cut(s) 142, 291, 1199, 1659, 2207
XbaI TCTAGA 1 cut(s) 1417
XceI RCATGY 4 cut(s) 539, 590, 1081, 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 1469
XhoI CTCGAG 1 cut(s) 126
XmiI GTMKAC 2 cut(s) 85, 1437
XmnI GAANNNNTTC 3 cut(s) 121, 960, 1601
Zsp2I ATGCAT 2 cut(s) 123, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.