Prupe.2G126900_v2.0.a1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000036
Physical Location & Seq
Forward (+)
18447713 .. 18452274
4562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G126900.1

Sequence Viewer

Length: 3531 bp
ATGGCACTTGTGAGAGCAGCTCAGCAAACCCCCTCTTCTAAAGCTTTTCGATGTTGTCGTTATCACGTGTTCCTGAGTTTCAGAGGCCAAGACACTCGCAAGACTTTCACTGACCACCTATACACGGCTCTTGTCAACGCCGGATTTCGCACTTTCCGAGATGACGATGAAGTCGAGAGAGGAGAAGGTATCAAGCCCGAACTGCAGAAAGCAATCAAACACTCTAGAACTTCTGTTATTGTGTTCTCGAAAAACTATGCGTCGTCCAGATGGTGCCTTGACGAGCTCGTCATGATCCTTGAACACAAGAGGATCTCAGCTGACCATGTCATTTTACCTGTCTTCTACGACGTGGATCCATCCGATGTGCGGAAGCAGACAGGAAGTCTTGCAAAGGCATTTGCTAGACACCAAAAAACCCAACCATCGAACAAAGAGAAGGAATGGAGGGAGGCACTTGCAGAGGTTGCAGATCTGGCAGGGATGGTCTTACAAAATCAAGGATACGAGTCAAAGTTTATCAACAAGATTGTTCAAGTGATAGGAGAAAAACTAAGGCGTAGACCCCTAAATGTTCCCCACATCATGATCGGAATGCATTCTCGAGTCCACGAACTGAATTTATGGTTACAAGATGGATCAGATGATGTCGGCATACTTGTAATTTATGGCATGAGTGGAATAGGGAAGACAACCATTGCAAAGTCTGTTTATAATACAAACTTTGAAAGATTTGGAGGAAGCAGCTTCATCGAAAACATTAGAGAAATTTCACAGCAACCTAATGGCCTAGTTCAAATACAAAAACAACTTCTTTATGATATTTTGATTGGGAGAAAAGTAAAAATACAGAGTGTTAGTGAGGGAATGACTGAGATACAAGATGCGATAAGCTCTAAAAGGGTTTTTCTTGTTCTCGACGATGTGGATCATATTAGCCAATTAGATGTGGTGCTTGGAATGAAAGATCAGTTTTATCCAGGAAGTAAAATCATCATAACAACTAGGCGTGCAGGATTGTTAAAGGCTCATCAAGTTACTAAGGTGCATGCAGTTCAAACTTTGGATAACAAAGAATCATTGGAGCTCTTCAGTTGGCACGCTTTTGGCCGAGACCATCCCATTGAAGATTACATAGAATATTCAAAGAAGCTAGTCGATCATTGCGGAGGACTTCCATTAGCCCTTCAAGTTTTAGGTTCTTCGTTGTTGGGGGAAAGTATAGGTGTATGGAAAAGTGCATTGGAGAAATTAAAAGCCATTCCAAATGGTGAAATAGTAAATAAGCTAAGAGTAAGTTACGATTCTTTGCAAGATGACCATGACCGAAAATTATTCCTTCACATTGCTTGTTTCTTTATCGGAAAGGACAAAGATTGCATTGTTAAAATACTAGATGGATGTGATTTCTATACAATTGTTGGCATTCAAAATCTCATCGATAGATGTTTGGTGACAATTGATGAATTTGACAAGGTGCATATGCATGATCTAATTTGTGGAATGGGAAGAGAAGTTGTTCACCAAGAATCGGAGGAGCCTTGGAAACGTAGTAGAATATGGCATCATAAGGATTCCTTCAAAATCCTGTTGGAAAATAATGGTACGAGAACAATTGAAGGTCTTGTCTTTGATATGCATATGCTTCCTACGAACATTCTCATTTACTCAAATGAGATAGTCTTGGAAACCAATGCATTTGCAAAGATGTGGGAACTAAAACTACTCCATCTTGGTCATGTACAATTTAACGGATCTTATGCAGAATTTTGCACAGGATTAAGATGGTTGTGTTGGACTAAGTTTCCTTTGGATTCTATACCCACCGAGTTTTCTTTGAGGAGCCTGGTTGTTCTTGAAATGCGATATAGCAGCTTGAGGCAAGTTTGCAAAGGAACAAAATGTCTTCCATCATTGAAGATTCTTGATCTCAGCCATTCTCATTCCCTTACAGAAACCACTGACTTCTCATTCTGCCCAAATCTAGAGAAACTTATTCTTGTAAACTGTGTGAGCCTGATTTATGGATCCATTGGAAACCTTGAGAGACTTGTTTACCTGAATATGAAGGATTGCAAAAATCTTAAGATGCTTCCAGAGGACATATGTATGCTAAAATTACTTGAAACACTTATTATATCTGGTTGCACAAGTCTTAATGAGTTATCACTTGAGATGTTGAGGAACATTGAATCTCTGAAAGTGCTTGAGACAGATGAAATTCCATTAGGTGAACTAAGGCCTGGAAGAAGTTCATGTATCTTGAGTTCTTTATCATGCTCTTTAGTAGATTTAAGTCTTCGGGGGTGCAATCTTTCGAATGATGCCTTTCCAAGGGAATTTAGTAATCTATCCTCATTGCGAAGACTAAATATAGGGGACAATCCAATTTGTAGCCTGCCCAATTGTATCAAAGGTTTAACTAGGCTCAAGAAACTCTCTTTTTCGCAATGTCAGAGTCTGAAATTGCTTGAGGAGTTACCAAAAGTGGGCACTTTGGAAGTAGTAGGTTGTGTATCATTGGAAAAAATAACATATCAAAGCTTTTGGTCCCGCAGACATACCGTATTGTGGAACAATCCCAACCTAGTTGAGAGAGAGTATACGTACAAGCTAGAACCCATTGGAAGTGTTGATGCAGAAATGATCAACCTTTTGGGCTTGTCAAACTTGGAATCCATGGCACCCATTCGGATGCGCAAACGAATGTGGATGTCCGAAAAGGATGATTGGAATCCCGTCCAGGGGCTATATGAAAAAGGTATATTCAGCACATTTTTTGCTGGGAATGAGGTTCCAGGGCAGTTCAGCCATAAAAGTACAAAGTCCCCGATATCTTTTACCGTGCCATTACTTGACAATCACAGAATTCAAGGCTTGAAGGTCTTCATTGTCTATACAAAATTGTATGCTCATTCTTCTGGTAGAGCTTTACCCGGGCCAATAATTACTAGAGTAAAAAATAAGAGCAAGGGTCTGAAGTGGATCTATTGCCCACGATGCTACGGTATTCCAGGTGAAGGAGAAGACATGATATGGTTAAGCCTCTGGAAGTTGGAGCAGGAGGTTCACTTAGATGGTAGCGATGAAGTGGTTGTTTCAGTAATTATGCAACCTTGGCTTCAGGTCAAGGAGTTTGGCATCCAGCTTGTGCAGCACCTGCAAGAAGGGAATACTAATATGATGACTGTTTCCACAGATTCTTCTTATTATCCATCTGTCAAGAGTGGAGATTCTTCTTATCAGCCAGGAGTATACTTGCTTTTCCGCAGAAGTAAACCAATACAAGATCCCATTTGGTTTAACAAGATCCTTGAGGACTCTGATGATGAAGATACGACGGTCAAAGAAGAAGAGCAACATTATGATCAGACAATTGCAGTCACGACAGGGAGCAATGAATCCGGCGGCCTCCGTGGCTGGAAGGGGAAGGTGCTCATCTCCGCAGCTTGCTTCTTTCTCACGCTTTCTCTCATCGCCCGGTCTTCTCTCCCACACAAAAAAAAGCGACAGTCAACAAGCCGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1177

Amino Acids

133.61

Weight (kDa)

7.98

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
AarI CACCTGC 1 cut(s) 3168
AasI GACNNNNNNGTC 2 cut(s) 170, 287
Acc16I TGCGCA 1 cut(s) 2699
Acc36I ACCTGC 1 cut(s) 3168
AccB1I GGYRCC 2 cut(s) 273, 2683
AccI GTMKAC 3 cut(s) 562, 2603, 3255
AciI CCGC 6 cut(s) 370, 1167, 2554, 3268, 3408, 3444
AcoI YGGCCR 1 cut(s) 1108
AcsI RAATTY 7 cut(s) 619, 768, 1466, 1766, 2220, 2339, 2868
AcuI CTGAAG 3 cut(s) 1075, 2999, 3107
AcvI CACGTG 1 cut(s) 67
AfaI GTAC 4 cut(s) 1606, 1743, 2609, 2821
AfiI CCNNNNNNNGG 9 cut(s) 124, 369, 1531, 2334, 2489, 2571, 2744, 2745, 3020
AflII CTTAAG 1 cut(s) 2084
AflIII ACRYGT 1 cut(s) 66
AhdI GACNNNNNGTC 1 cut(s) 384
AjiI CACGTC 1 cut(s) 352
AjnI CCWGG 7 cut(s) 979, 1845, 2242, 2742, 2797, 3013, 3247
AjuI GAANNNNNNNTTGG 2 cut(s) 1226, 1258
Alw21I GWGCWC 3 cut(s) 288, 1089, 3438
Alw26I GTCTC 3 cut(s) 1107, 2041, 2204
AlwNI CAGNNNCTG 2 cut(s) 2461, 3160
Ama87I CYCGRG 2 cut(s) 603, 2936
AoxI GGCC 6 cut(s) 85, 787, 1108, 2240, 2939, 3409
ApeKI GCWGC 5 cut(s) 17, 744, 1872, 3154, 3446
ApoI RAATTY 7 cut(s) 619, 768, 1466, 1766, 2220, 2339, 2868
Asp700I GAANNNNTTC 4 cut(s) 598, 1518, 2251, 2885
AspLEI GCGC 1 cut(s) 2700
AspS9I GGNCC 2 cut(s) 2550, 2939
AsuC2I CCSGG 3 cut(s) 2937, 2938, 3481
AsuHPI GGTGA 5 cut(s) 1283, 1465, 1514, 2243, 3029
AsuII TTCGAA 1 cut(s) 2318
AvaI CYCGRG 2 cut(s) 603, 2936
AvaII GGWCC 1 cut(s) 2550
BaeGI GKGCMC 1 cut(s) 2495
BaeI ACNNNNGTAYC 2 cut(s) 3327, 3360
BamHI GGATCC 2 cut(s) 355, 2027
BanI GGYRCC 2 cut(s) 273, 2683
BanII GRGCYC 2 cut(s) 288, 1089
BbrPI CACGTG 1 cut(s) 67
BbsI GAAGAC 8 cut(s) 334, 695, 1898, 2291, 2371, 2878, 3033, 3477
Bbv12I GWGCWC 3 cut(s) 288, 1089, 3438
BbvI GCAGC 5 cut(s) 29, 756, 1884, 3166, 3458
BceAI ACGGC 2 cut(s) 141, 3507
BcgI CGANNNNNNTGC 2 cut(s) 733, 767
BciT130I CCWGG 7 cut(s) 981, 1847, 2244, 2744, 2799, 3015, 3249
BciVI GTATCC 1 cut(s) 497
BclI TGATCA 2 cut(s) 2646, 3367
BcnI CCSGG 3 cut(s) 2937, 2938, 3481
BcoDI GTCTC 3 cut(s) 1107, 2041, 2204
BfmI CTRYAG 1 cut(s) 203
BfrI CTTAAG 1 cut(s) 2084
BfuAI ACCTGC 1 cut(s) 3168
BfuI GTATCC 1 cut(s) 497
BglI GCCNNNNNGGC 1 cut(s) 3417
BglII AGATCT 1 cut(s) 472
BisI GCNGC 6 cut(s) 18, 745, 1873, 3155, 3409, 3447
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 6 cut(s) 19, 746, 1874, 3156, 3410, 3448
Bme18I GGWCC 1 cut(s) 2550
BmeRI GACNNNNNGTC 1 cut(s) 384
BmeT110I CYCGRG 2 cut(s) 603, 2936
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 2550, 2939
BmiI GGNNCC 8 cut(s) 275, 357, 1539, 1844, 2029, 2552, 2685, 2796
BmsI GCATC 8 cut(s) 874, 1573, 2079, 2314, 2626, 2685, 2990, 3150
BpiI GAAGAC 8 cut(s) 334, 695, 1898, 2291, 2371, 2878, 3033, 3477
BplI GAGNNNNNCTC 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 2318
BpuEI CTTGAG 8 cut(s) 1897, 2063, 2192, 2228, 2284, 2414, 2492, 3335
BpuMI CCSGG 3 cut(s) 2937, 2938, 3481
Bsa29I ATCGAT 1 cut(s) 1440
BsaAI YACGTR 2 cut(s) 67, 2607
BsaBI GATNNNNATC 2 cut(s) 927, 2733
BsaI GGTCTC 1 cut(s) 1107
BsaJI CCNNGG 9 cut(s) 1541, 2333, 2679, 2743, 2798, 2936, 3116, 3415, 3523
Bsc4I CCNNNNNNNGG 9 cut(s) 124, 369, 1531, 2334, 2489, 2571, 2744, 2745, 3020
Bse3DI GCAATG 6 cut(s) 696, 1162, 1344, 2357, 2456, 3403
Bse8I GATNNNNATC 2 cut(s) 927, 2733
BseBI CCWGG 7 cut(s) 981, 1847, 2244, 2744, 2799, 3015, 3249
BseCI ATCGAT 1 cut(s) 1440
BseDI CCNNGG 9 cut(s) 1541, 2333, 2679, 2743, 2798, 2936, 3116, 3415, 3523
BseGI GGATG 8 cut(s) 359, 489, 1117, 1406, 2700, 2718, 2731, 3141
BseJI GATNNNNATC 2 cut(s) 927, 2733
BseLI CCNNNNNNNGG 9 cut(s) 124, 369, 1531, 2334, 2489, 2571, 2744, 2745, 3020
BseMI GCAATG 6 cut(s) 696, 1162, 1344, 2357, 2456, 3403
BseMII CTCAG 5 cut(s) 35, 65, 330, 864, 1945
BseRI GAGGAG 4 cut(s) 195, 1550, 1855, 2489
BseSI GKGCMC 1 cut(s) 2495
BseXI GCAGC 5 cut(s) 29, 756, 1884, 3166, 3458
BseYI CCCAGC 1 cut(s) 2783
BsgI GTGCAG 2 cut(s) 1032, 3173
BshFI GGCC 6 cut(s) 87, 789, 1110, 2242, 2941, 3411
BshNI GGYRCC 2 cut(s) 273, 2683
BshVI ATCGAT 1 cut(s) 1440
BsiHKAI GWGCWC 3 cut(s) 288, 1089, 3438
BsiHKCI CYCGRG 2 cut(s) 603, 2936
BsiSI CCGG 4 cut(s) 141, 2937, 3405, 3481
BslFI GGGAC 3 cut(s) 2393, 2536, 2812
BslI CCNNNNNNNGG 9 cut(s) 124, 369, 1531, 2334, 2489, 2571, 2744, 2745, 3020
BsmAI GTCTC 3 cut(s) 1107, 2041, 2204
BsmFI GGGAC 3 cut(s) 2393, 2536, 2812
BsmI GAATGC 3 cut(s) 598, 600, 1425
BsnI GGCC 6 cut(s) 87, 789, 1110, 2242, 2941, 3411
Bso31I GGTCTC 1 cut(s) 1107
BsoBI CYCGRG 2 cut(s) 603, 2936
Bsp119I TTCGAA 1 cut(s) 2318
Bsp1286I GDGCHC 4 cut(s) 288, 1089, 2495, 3438
Bsp1407I TGTACA 1 cut(s) 1741
Bsp1720I GCTNAGC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 2679
BspACI CCGC 6 cut(s) 370, 1167, 2554, 3268, 3408, 3444
BspANI GGCC 6 cut(s) 87, 789, 1110, 2242, 2941, 3411
BspCNI CTCAG 5 cut(s) 34, 66, 329, 865, 1944
BspDI ATCGAT 1 cut(s) 1440
BspHI TCATGA 2 cut(s) 291, 585
BspLI GGNNCC 8 cut(s) 275, 357, 1539, 1844, 2029, 2552, 2685, 2796
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 3168
BspQI GCTCTTC 2 cut(s) 1094, 3348
BspT104I TTCGAA 1 cut(s) 2318
BspT107I GGYRCC 2 cut(s) 273, 2683
BspTI CTTAAG 1 cut(s) 2084
BspTNI GGTCTC 1 cut(s) 1107
BsrDI GCAATG 6 cut(s) 696, 1162, 1344, 2357, 2456, 3403
BsrGI TGTACA 1 cut(s) 1741
BssECI CCNNGG 9 cut(s) 1541, 2333, 2679, 2743, 2798, 2936, 3116, 3415, 3523
BssNAI GTATAC 2 cut(s) 2604, 3256
BssT1I CCWWGG 4 cut(s) 1541, 2333, 2679, 3116
Bst1107I GTATAC 2 cut(s) 2604, 3256
Bst2UI CCWGG 7 cut(s) 981, 1847, 2244, 2744, 2799, 3015, 3249
Bst4CI ACNGT 7 cut(s) 2009, 2566, 2845, 3008, 3190, 3343, 3513
Bst6I CTCTTC 4 cut(s) 40, 1094, 1504, 3348
BstAFI CTTAAG 1 cut(s) 2084
BstAPI GCANNNNNTGC 2 cut(s) 467, 3160
BstAUI TGTACA 1 cut(s) 1741
BstBAI YACGTR 2 cut(s) 67, 2607
BstBI TTCGAA 1 cut(s) 2318
BstC8I GCNNGC 5 cut(s) 1011, 1050, 1101, 2399, 3451
BstDSI CCRYGG 3 cut(s) 2679, 3415, 3523
BstENI CCTNNNNNAGG 1 cut(s) 2332
BstF5I GGATG 8 cut(s) 359, 489, 1117, 1406, 2700, 2718, 2731, 3141
BstHHI GCGC 1 cut(s) 2700
BstMAI GTCTC 3 cut(s) 1107, 2041, 2204
BstMWI GCNNNNNNNGC 8 cut(s) 202, 467, 476, 3000, 3118, 3154, 3160, 3417
BstNI CCWGG 7 cut(s) 981, 1847, 2244, 2744, 2799, 3015, 3249
BstNSI RCATGY 1 cut(s) 1052
BstSFI CTRYAG 1 cut(s) 203
BstSLI GKGCMC 1 cut(s) 2495
BstSNI TACGTA 1 cut(s) 2607
BstV1I GCAGC 5 cut(s) 29, 756, 1884, 3166, 3458
BstV2I GAAGAC 8 cut(s) 334, 695, 1898, 2291, 2371, 2878, 3033, 3477
BstX2I RGATCY 8 cut(s) 312, 355, 472, 1754, 2027, 2985, 3289, 3309
BstYI RGATCY 8 cut(s) 312, 355, 472, 1754, 2027, 2985, 3289, 3309
BstZ17I GTATAC 2 cut(s) 2604, 3256
Bsu15I ATCGAT 1 cut(s) 1440
BsuI GTATCC 1 cut(s) 497
BsuRI GGCC 6 cut(s) 87, 789, 1110, 2242, 2941, 3411
BsuTUI ATCGAT 1 cut(s) 1440
BtgI CCRYGG 3 cut(s) 2679, 3415, 3523
BtgZI GCGATG 2 cut(s) 3099, 3460
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 8 cut(s) 359, 489, 1117, 1406, 2700, 2718, 2731, 3141
BtsIMutI CAGTG 2 cut(s) 108, 1959
BveI ACCTGC 1 cut(s) 3168
Cac8I GCNNGC 5 cut(s) 1011, 1050, 1101, 2399, 3451
CaiI CAGNNNCTG 2 cut(s) 2461, 3160
CciI TCATGA 2 cut(s) 291, 585
CfoI GCGC 1 cut(s) 2700
Cfr13I GGNCC 2 cut(s) 2550, 2939
Cfr9I CCCGGG 1 cut(s) 2936
ClaI ATCGAT 1 cut(s) 1440
CseI GACGC 1 cut(s) 249
Csp6I GTAC 4 cut(s) 1605, 1742, 2608, 2820
CviQI GTAC 4 cut(s) 1605, 1742, 2608, 2820
DrdI GACNNNNNNGTC 2 cut(s) 170, 287
DriI GACNNNNNGTC 1 cut(s) 384
DseDI GACNNNNNNGTC 2 cut(s) 170, 287
EaeI YGGCCR 1 cut(s) 1108
Eam1104I CTCTTC 4 cut(s) 40, 1094, 1504, 3348
Eam1105I GACNNNNNGTC 1 cut(s) 384
EarI CTCTTC 4 cut(s) 40, 1094, 1504, 3348
Ecl136II GAGCTC 2 cut(s) 286, 1087
Eco105I TACGTA 1 cut(s) 2607
Eco130I CCWWGG 4 cut(s) 1541, 2333, 2679, 3116
Eco147I AGGCCT 1 cut(s) 2242
Eco24I GRGCYC 2 cut(s) 288, 1089
Eco31I GGTCTC 1 cut(s) 1107
Eco32I GATATC 1 cut(s) 2835
Eco47I GGWCC 1 cut(s) 2550
Eco53kI GAGCTC 2 cut(s) 286, 1087
Eco57I CTGAAG 3 cut(s) 1075, 2999, 3107
Eco72I CACGTG 1 cut(s) 67
Eco88I CYCGRG 2 cut(s) 603, 2936
EcoICRI GAGCTC 2 cut(s) 286, 1087
EcoNI CCTNNNNNAGG 1 cut(s) 2332
EcoRI GAATTC 1 cut(s) 2868
EcoRII CCWGG 7 cut(s) 979, 1845, 2242, 2742, 2797, 3013, 3247
EcoRV GATATC 1 cut(s) 2835
EcoT14I CCWWGG 4 cut(s) 1541, 2333, 2679, 3116
EcoT22I ATGCAT 4 cut(s) 600, 1488, 1641, 1699
EcoT38I GRGCYC 2 cut(s) 288, 1089
ErhI CCWWGG 4 cut(s) 1541, 2333, 2679, 3116
FalI AAGNNNNNCTT 2 cut(s) 1562, 1594
FaqI GGGAC 3 cut(s) 2393, 2536, 2812
FauI CCCGC 1 cut(s) 2561
FauNDI CATATG 3 cut(s) 1482, 1641, 2105
FbaI TGATCA 2 cut(s) 2646, 3367
FblI GTMKAC 3 cut(s) 562, 2603, 3255
Fnu4HI GCNGC 6 cut(s) 18, 745, 1873, 3155, 3409, 3447
FokI GGATG 8 cut(s) 346, 496, 1104, 1413, 2707, 2725, 2738, 3128
FriOI GRGCYC 2 cut(s) 288, 1089
Fsp4HI GCNGC 6 cut(s) 18, 745, 1873, 3155, 3409, 3447
FspI TGCGCA 1 cut(s) 2699
GlaI GCGC 1 cut(s) 2699
GluI GCNGC 6 cut(s) 18, 745, 1873, 3155, 3409, 3447
GsaI CCCAGC 1 cut(s) 2787
HaeIII GGCC 6 cut(s) 87, 789, 1110, 2242, 2941, 3411
HapII CCGG 4 cut(s) 141, 2937, 3405, 3481
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 2700
Hin6I GCGC 1 cut(s) 2698
HinP1I GCGC 1 cut(s) 2698
HincII GTYRAC 2 cut(s) 136, 3516
HindII GTYRAC 2 cut(s) 136, 3516
HindIII AAGCTT 2 cut(s) 42, 2542
HpaII CCGG 4 cut(s) 141, 2937, 3405, 3481
HphI GGTGA 5 cut(s) 1283, 1465, 1514, 2243, 3029
Hpy99I CGWCG 4 cut(s) 265, 353, 923, 3343
HpyCH4III ACNGT 7 cut(s) 2009, 2566, 2845, 3008, 3190, 3343, 3513
HpyCH4IV ACGT 4 cut(s) 66, 351, 1549, 2606
HpyF10VI GCNNNNNNNGC 8 cut(s) 202, 467, 476, 3000, 3118, 3154, 3160, 3417
HpySE526I ACGT 4 cut(s) 66, 351, 1549, 2606
HspAI GCGC 1 cut(s) 2698
Ksp22I TGATCA 2 cut(s) 2646, 3367
LguI GCTCTTC 2 cut(s) 1094, 3348
LmnI GCTCC 5 cut(s) 1084, 1537, 1842, 3058, 3393
Lsp1109I GCAGC 5 cut(s) 29, 756, 1884, 3166, 3458
LweI GCATC 8 cut(s) 874, 1573, 2079, 2314, 2626, 2685, 2990, 3150
MaeII ACGT 4 cut(s) 66, 351, 1549, 2606
MaeIII GTNAC 6 cut(s) 627, 1036, 1298, 1453, 2478, 3382
MfeI CAATTG 5 cut(s) 1416, 1458, 1614, 2404, 3375
MflI RGATCY 8 cut(s) 312, 355, 472, 1754, 2027, 2985, 3289, 3309
MhlI GDGCHC 4 cut(s) 288, 1089, 2495, 3438
MlyI GAGTC 4 cut(s) 518, 615, 2467, 3314
MmeI TCCRAC 3 cut(s) 1572, 1775, 3036
Mph1103I ATGCAT 4 cut(s) 600, 1488, 1641, 1699
MroXI GAANNNNTTC 4 cut(s) 598, 1518, 2251, 2885
MslI CAYNNNNRTG 4 cut(s) 1485, 2108, 2693, 3075
MspA1I CMGCKG 1 cut(s) 320
MspCI CTTAAG 1 cut(s) 2084
MspI CCGG 4 cut(s) 141, 2937, 3405, 3481
MunI CAATTG 5 cut(s) 1416, 1458, 1614, 2404, 3375
Mva1269I GAATGC 3 cut(s) 598, 600, 1425
MvaI CCWGG 7 cut(s) 981, 1847, 2244, 2744, 2799, 3015, 3249
MwoI GCNNNNNNNGC 8 cut(s) 202, 467, 476, 3000, 3118, 3154, 3160, 3417
NciI CCSGG 3 cut(s) 2937, 2938, 3481
NcoI CCATGG 1 cut(s) 2679
NdeI CATATG 3 cut(s) 1482, 1641, 2105
NlaIV GGNNCC 8 cut(s) 275, 357, 1539, 1844, 2029, 2552, 2685, 2796
NmeAIII GCCGAG 1 cut(s) 1136
NmuCI GTSAC 2 cut(s) 1453, 3382
NsbI TGCGCA 1 cut(s) 2699
NsiI ATGCAT 4 cut(s) 600, 1488, 1641, 1699
NspI RCATGY 1 cut(s) 1052
NspV TTCGAA 1 cut(s) 2318
PaeI GCATGC 1 cut(s) 1052
PaeR7I CTCGAG 1 cut(s) 603
PagI TCATGA 2 cut(s) 291, 585
PaqCI CACCTGC 1 cut(s) 3168
PceI AGGCCT 1 cut(s) 2242
PciSI GCTCTTC 2 cut(s) 1094, 3348
PcsI WCGNNNNNNNCGW 3 cut(s) 55, 154, 171
PctI GAATGC 3 cut(s) 598, 600, 1425
PdmI GAANNNNTTC 4 cut(s) 598, 1518, 2251, 2885
PflFI GACNNNGTC 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 979
PkrI GCNGC 6 cut(s) 19, 746, 1874, 3156, 3410, 3448
PleI GAGTC 4 cut(s) 517, 614, 2466, 3314
PmaCI CACGTG 1 cut(s) 67
PmlI CACGTG 1 cut(s) 67
PpsI GAGTC 4 cut(s) 517, 614, 2466, 3314
Ppu21I YACGTR 2 cut(s) 67, 2607
PsiI TTATAA 1 cut(s) 714
Psp124BI GAGCTC 2 cut(s) 288, 1089
Psp6I CCWGG 7 cut(s) 979, 1845, 2242, 2742, 2797, 3013, 3247
PspCI CACGTG 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 2783
PspGI CCWGG 7 cut(s) 979, 1845, 2242, 2742, 2797, 3013, 3247
PspN4I GGNNCC 8 cut(s) 275, 357, 1539, 1844, 2029, 2552, 2685, 2796
PspPI GGNCC 2 cut(s) 2550, 2939
PsrI GAACNNNNNNTAC 4 cut(s) 1707, 1739, 2251, 2283
PstI CTGCAG 1 cut(s) 207
PstNI CAGNNNCTG 2 cut(s) 2461, 3160
PsuI RGATCY 8 cut(s) 312, 355, 472, 1754, 2027, 2985, 3289, 3309
PsyI GACNNNGTC 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 4 cut(s) 1606, 1743, 2609, 2821
RsaNI GTAC 4 cut(s) 1605, 1742, 2608, 2820
RseI CAYNNNNRTG 4 cut(s) 1485, 2108, 2693, 3075
SacI GAGCTC 2 cut(s) 288, 1089
SapI GCTCTTC 2 cut(s) 1094, 3348
SatI GCNGC 6 cut(s) 18, 745, 1873, 3155, 3409, 3447
Sau96I GGNCC 2 cut(s) 2550, 2939
SchI GAGTC 4 cut(s) 518, 615, 2467, 3314
SduI GDGCHC 4 cut(s) 288, 1089, 2495, 3438
SfaNI GCATC 8 cut(s) 874, 1573, 2079, 2314, 2626, 2685, 2990, 3150
SfcI CTRYAG 1 cut(s) 203
Sfr274I CTCGAG 1 cut(s) 603
SfuI TTCGAA 1 cut(s) 2318
SinI GGWCC 1 cut(s) 2550
SlaI CTCGAG 1 cut(s) 603
SmaI CCCGGG 1 cut(s) 2938
SmiMI CAYNNNNRTG 4 cut(s) 1485, 2108, 2693, 3075
SnaBI TACGTA 1 cut(s) 2607
SphI GCATGC 1 cut(s) 1052
SseBI AGGCCT 1 cut(s) 2242
SsiI CCGC 6 cut(s) 370, 1167, 2554, 3268, 3408, 3444
SspI AATATT 1 cut(s) 1142
SstI GAGCTC 2 cut(s) 288, 1089
StuI AGGCCT 1 cut(s) 2242
StyI CCWWGG 4 cut(s) 1541, 2333, 2679, 3116
TaaI ACNGT 7 cut(s) 2009, 2566, 2845, 3008, 3190, 3343, 3513
TaiI ACGT 4 cut(s) 69, 354, 1552, 2609
TaqII GACCGA 1 cut(s) 1341
TatI WGTACW 2 cut(s) 1741, 2819
TauI GCSGC 1 cut(s) 3411
TscAI CASTG 2 cut(s) 115, 1966
TseFI GTSAC 2 cut(s) 1453, 3382
TseI GCWGC 5 cut(s) 17, 744, 1872, 3154, 3446
Tsp45I GTSAC 2 cut(s) 1453, 3382
TspGWI ACGGA 2 cut(s) 1767, 3404
TspMI CCCGGG 1 cut(s) 2936
TspRI CASTG 2 cut(s) 115, 1966
Tth111I GACNNNGTC 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 2084
VpaK11BI GGWCC 1 cut(s) 2550
XagI CCTNNNNNAGG 1 cut(s) 2332
XapI RAATTY 7 cut(s) 619, 768, 1466, 1766, 2220, 2339, 2868
XbaI TCTAGA 2 cut(s) 224, 1984
XceI RCATGY 1 cut(s) 1052
XhoI CTCGAG 1 cut(s) 603
XmaI CCCGGG 1 cut(s) 2936
XmiI GTMKAC 3 cut(s) 562, 2603, 3255
XmnI GAANNNNTTC 4 cut(s) 598, 1518, 2251, 2885
Zsp2I ATGCAT 4 cut(s) 600, 1488, 1641, 1699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.