Prupe.2G121000_v2.0.a1

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000036
Physical Location & Seq
Forward (+)
17832432 .. 17837030
4599 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G121000.2

Sequence Viewer

Length: 3450 bp
ATGGCTCTTGTGAGAGCAGCCGATCCACAAACCTCCTCTGTTTCCAGTACTTTTGGATATTGTCGTTATCACGTGTTCCTGAGTTTCAGAGGCCAAGACACTCGCAAGACTTTCACTGACCACCTCTACACGGCCCTTGTCAACGCCGGATTTCGCACTTTCCGAGACTACGATGAAGTCGAGAGAGGAGAAGGTATCAAGCCCGAACTGCAGAAAGCAATCAAACACTCACGAACTTCTGTCATTGTGTTCTCGAAAGACTACGCGTCATCCAGATGGTGCCTTGACGAGCTGGTGATGATCCTTGAACGCAAGAGAAAGACCTCAGATGATCATGTCGTTTTGCCTGTCTTCTACGATGTGTATCCATCCCATGTAAAGAAGCAGACAGGAAGTCTTGCAAAGGCATTTGCTGGACACCAAAAAACTCAACCGCTGCCGAAGGTGAAGGCATGGAGAGAGGCACTTGCAGAGGTTGCAGATCTGGCAGGGATGGTCTTGCAAAATCAAGCTCATGGGTACGAGTCAAAGTTTATCCAGAAAATAGTTAAAGTGATTGGAGACAAACTAAGTCGTACACCATTGAGTGTTGCTCCCAACTTGGTTGGAATGCATTCTCAAGTCGAAAGAATTAATTTCTGGTTACAACGCAGGTCAACTGATGTTGGCATACTTGTAATCTATGGGATGAGTGGAATAGGGAAAACAACCATCGCAAAGACTGTTTACAATTCAAACTTTAGAATATTTGAAGGAAGCAGCTTCCTTGAAAATATCAAAGAAGTTTCACAGCAACCCAATGGCTTAGTTCAAATACAAACACTTCTTCTTTCTGACATTTTGAATGGGAGAAAAATGAAAATAAGCAATGTTAGTGAGGGATTAATTAAGATTGCAGATGCAATAATCTCTACAAGGGTTCTTCTTGTTCTCGATGATGTGGATCATACGGACCAATTAGATGCAGTATTTCAAATGAAAGATCAATTTTATCCAGGAAGTAAAATCATCATAACAACTAGGCGTGCAAGACTGTTAAAGGCTCATCAAGTTACTGAGGTGTATGCAGTTGAAACTTTGACTAAAGAAGAATCATTGGAGCTCTTCAGTTGGCACGCTTTTGGCCAAGACCATCCTATTGAAGATTACATAGAATATTCAGAGAAGCTAGTCAATCATTGCGGAGGACTTCCATTAGCTCTCAAAGTTTTAGGTTCTTCTTTGTTGGGGGAAAGTGTATGTCTATGGAAAAGTGCATTGGCGAAGTTAGAAGTTATTCCAAATGGTGAAATAATAAATAAACTAAGAGTAAGCTATGACTCTTTGCAAGATGACCATGACCAAAAATTATTCCTCCACATTGCTTGTTTCTTTATCGGAATGGACAAAGATTACATTGCTAAAATACTAGATGGATGTGATTTCTATACAATTGTTGGCATTCAAAATCTCATCGATAGATGTTTGGTGATTATTGATGGATGGGACAAGGTGCGGATGCACGACCTGATTCGTGGAATGGGAAGAGAAATTGTTCGCCTAGAATCAAAGGAGCCTTGGAAGCGTAGTAGAGTATGGCATCATAAGGACTCTTTCAAAATCTTGACGGAAAAGAATGATACGGAAACAATTGAAGGTCTTGTCCTGGACATGCACATGTGCCCTACTATAAACTCAAATGAGAAAGTCTTGGAAACCAATGCATTTTCACGGATGCAGGAACTAAAACTACTCCATCTTAGTCATGTAAAACTCCGCGGATGTTATGCAAAATTTTGTAGTGGACTAAGATGGTTGTGTTGGCTTGAATTTCCTTTAGATTCTATACCCGTTGATTTTCCTTTGGGAAGCATTATTGTTCTTGAAATGCAATACAGCGGTCTGAGACAAGTATTCAAAGGAACAAAATATCTTCCTTCCTTGAAGATCCTTGATCTCAGCCATTCTCATTCCCTTACAGAAACCATTGAATTCTCATATTGCCCAAATCTAGAGAAATTGGTTCTAGTAGACTGCACGAGCCTGATTTATGTCCATGGATCCATTGGAAACCTAGAGAGACTTATTTACTTGAATATGAAAGATTGCAAAAAGATTAGGTTGCTTCCCAAGAACATTTGTATGCTAAAATCACTTGAAACATTTATTATATCTGGTTGCTCAAATCTAAAGGAGTTATCAATTGAGATGTTGAGGAACATGGTCTCGTTAAAAGTGCTTGAGACAGATGGAATTCTGATAAGTGAATTATGGCTAGAAAGAAGTTTGAGTATCTTGTGTTCTTTACCATGCTCTTTAGTAGAATTAAGTCTTTGGGGGTGCAATCTTTCGAATGATGCCTTTCCTATGGATTTTAGTAATATGTCGTCATTGCAAAGATTAAATCTAGGGAATAATCCAATTTGTAGCCTACCAAATTGTATCAAAGGATTAGCGAGGCTCGATAAACTCTCTTTTTCCATGTGTACAAGTCTCAAATCGCTTCTGGGGTTACCAAAAGTAAAGAACTTGGATATTGTAGATTGCATTTCATTGGAGAAAATAACATTTCAATCCCGTCACGTAGAGACAGCCACATCATTTAATCGCAACAGCCTAGTTGAGTGGCAGTACAAGTTCAAGTTACTTGATAGTGTAGATGTAGAAAGGATCGACATCTTTGGATTGTGCAACTTCTTGGAATCAATGGCACCCATTCTACAAAAGGATGATCCAATTCCCGTCCAGGGACTATACGAATGTCGTATATTCAGCACATTTTTTGGTGGGAATGAGGTTCCTGGCCAATTCAGCCATAAAAGCAGAGGGTCCTCAATATCTTTTACTGTGCCATTACTTGATAATCACAGAACTCGAGGCTTGATTTTCTTTGTTGTCTATTCGAATGCTGGCTATGATTCTCCTATTATCCAACACAATTGTTTGCCACATATAAGAGTCAAAAATAAGAGCAAGGGTCTGAGGGGGGCGTATGAACCATCACACTACGGTATTCCAGGTGAAGGAGAAGACATGATATGGTTAAGCCACTGGAGTTTGGAGGATGATCAGTTACAAGGGGGCGATGAAGTGGTTGTTTCTGTAATTATGAAATCTGGGCTTCTGGTTAAGGAGTTGGGCATCCGACTTGTGCAGGTGCAACAAGAAGAGAATCATAATATGATGAGTATTTCTACAGATTCTTCTTATGATCCAATATCGTTCAGTATGATCCTTGGGGACTCTGATGAAGAAGAGGAGGTTTTCTCTCGTTTTGTATGTTTACCAGACGAAGAAGAAGAGCAACAGGATGATATCACAGTTACAACCACCACAGGCAGCAATAACTCCGGCGTCCTCCATGGCTGGAAGGTGCTCGTCACCGCAGCTTGCTTCTTTCTCACCCTTTCTCTAATCACTCGGTCTTCTCTCTCAGGCAGAAAGAAGGGACCGTCCACAAGCCCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1150

Amino Acids

129.8

Weight (kDa)

6.39

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3124
Acc36I ACCTGC 2 cut(s) 642, 3124
AccB1I GGYRCC 2 cut(s) 279, 2689
AccI GTMKAC 1 cut(s) 2010
AccII CGCG 2 cut(s) 266, 1758
AciI CCGC 7 cut(s) 434, 1182, 1495, 1756, 1758, 1878, 3363
AcoI YGGCCR 2 cut(s) 1123, 2782
AcsI RAATTY 4 cut(s) 1772, 1808, 1970, 2232
AcuI CTGAAG 1 cut(s) 1090
AcvI CACGTG 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 3333
AfaI GTAC 5 cut(s) 49, 521, 577, 2467, 2612
AfiI CCNNNNNNNGG 3 cut(s) 130, 2726, 3002
AflIII ACRYGT 3 cut(s) 72, 264, 1656
AhdI GACNNNNNGTC 2 cut(s) 265, 393
AjnI CCWGG 6 cut(s) 994, 1644, 2724, 2779, 2995, 3442
AjuI GAANNNNNNNTTGG 2 cut(s) 1241, 1273
AluBI AGCT 8 cut(s) 292, 512, 762, 1102, 1168, 1199, 1314, 3368
AluI AGCT 8 cut(s) 292, 512, 762, 1102, 1168, 1199, 1314, 3368
Alw21I GWGCWC 2 cut(s) 1104, 3357
Alw26I GTCTC 8 cut(s) 159, 555, 1879, 2053, 2209, 2216, 2477, 2561
Ama87I CYCGRG 1 cut(s) 2853
AoxI GGCC 4 cut(s) 91, 132, 1123, 2782
ApeKI GCWGC 5 cut(s) 17, 436, 759, 3318, 3365
ApoI RAATTY 4 cut(s) 1772, 1808, 1970, 2232
AseI ATTAAT 2 cut(s) 633, 884
Asp700I GAANNNNTTC 3 cut(s) 613, 1275, 1533
AspS9I GGNCC 4 cut(s) 133, 952, 2808, 3428
AsuHPI GGTGA 7 cut(s) 307, 457, 1298, 1480, 3011, 3352, 3373
AsuII TTCGAA 2 cut(s) 2330, 2882
AvaI CYCGRG 1 cut(s) 2853
AvaII GGWCC 3 cut(s) 952, 2808, 3428
BaeGI GKGCMC 1 cut(s) 1664
BalI TGGCCA 2 cut(s) 1125, 2784
BamHI GGATCC 1 cut(s) 2039
BanI GGYRCC 2 cut(s) 279, 2689
BanII GRGCYC 1 cut(s) 1104
BauI CACGAG 1 cut(s) 2017
BbrPI CACGTG 1 cut(s) 73
BbsI GAAGAC 3 cut(s) 343, 3015, 3396
Bbv12I GWGCWC 2 cut(s) 1104, 3357
BbvI GCAGC 5 cut(s) 29, 423, 771, 3330, 3377
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
BciVI GTATCC 1 cut(s) 375
BclI TGATCA 2 cut(s) 331, 3046
BcoDI GTCTC 8 cut(s) 159, 555, 1879, 2053, 2209, 2216, 2477, 2561
BfmI CTRYAG 2 cut(s) 209, 3174
BfuAI ACCTGC 2 cut(s) 642, 3124
BfuI GTATCC 1 cut(s) 375
BglII AGATCT 1 cut(s) 481
BisI GCNGC 5 cut(s) 18, 437, 760, 3319, 3366
BlsI GCNGC 5 cut(s) 19, 438, 761, 3320, 3367
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
Bme18I GGWCC 3 cut(s) 952, 2808, 3428
BmeRI GACNNNNNGTC 2 cut(s) 265, 393
BmeT110I CYCGRG 1 cut(s) 2853
BmgT120I GGNCC 4 cut(s) 133, 952, 2808, 3428
BmiI GGNNCC 7 cut(s) 281, 1554, 2041, 2691, 2778, 2809, 3429
BmrFI CCNGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
BmsI GCATC 7 cut(s) 889, 952, 1488, 1588, 1704, 2326, 3129
BpiI GAAGAC 3 cut(s) 343, 3015, 3396
BplI GAGNNNNNCTC 4 cut(s) 577, 609, 3230, 3262
BpmI CTGGAG 1 cut(s) 3052
Bpu14I TTCGAA 2 cut(s) 2330, 2882
BpuEI CTTGAG 2 cut(s) 603, 2240
Bsa29I ATCGAT 1 cut(s) 1455
BsaAI YACGTR 2 cut(s) 73, 2563
BsaBI GATNNNNATC 3 cut(s) 363, 942, 2654
BsaHI GRCGYC 1 cut(s) 3333
BsaI GGTCTC 1 cut(s) 2209
BsaJI CCNNGG 7 cut(s) 1556, 1756, 2035, 2725, 3214, 3340, 3442
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 2726, 3002
Bse1I ACTGG 2 cut(s) 45, 3035
Bse3DI GCAATG 5 cut(s) 874, 1177, 1359, 1395, 2369
Bse8I GATNNNNATC 3 cut(s) 363, 942, 2654
BseBI CCWGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
BseCI ATCGAT 1 cut(s) 1455
BseDI CCNNGG 7 cut(s) 1556, 1756, 2035, 2725, 3214, 3340, 3442
BseJI GATNNNNATC 3 cut(s) 363, 942, 2654
BseLI CCNNNNNNNGG 3 cut(s) 130, 2726, 3002
BseMI GCAATG 5 cut(s) 874, 1177, 1359, 1395, 2369
BseMII CTCAG 7 cut(s) 71, 339, 1047, 1874, 1951, 2951, 3426
BseNI ACTGG 2 cut(s) 45, 3035
BseRI GAGGAG 3 cut(s) 25, 201, 3251
BseSI GKGCMC 1 cut(s) 1664
BseXI GCAGC 5 cut(s) 29, 423, 771, 3330, 3377
BsgI GTGCAG 2 cut(s) 1999, 3152
Bsh1236I CGCG 2 cut(s) 266, 1758
BshFI GGCC 4 cut(s) 93, 134, 1125, 2784
BshNI GGYRCC 2 cut(s) 279, 2689
BshVI ATCGAT 1 cut(s) 1455
BsiHKAI GWGCWC 2 cut(s) 1104, 3357
BsiHKCI CYCGRG 1 cut(s) 2853
BsiSI CCGG 2 cut(s) 147, 3330
BslFI GGGAC 4 cut(s) 1499, 2742, 3233, 3441
BslI CCNNNNNNNGG 3 cut(s) 130, 2726, 3002
BsmAI GTCTC 8 cut(s) 159, 555, 1879, 2053, 2209, 2216, 2477, 2561
BsmFI GGGAC 4 cut(s) 1499, 2742, 3233, 3441
BsmI GAATGC 4 cut(s) 613, 615, 1440, 2890
BsnI GGCC 4 cut(s) 93, 134, 1125, 2784
Bso31I GGTCTC 1 cut(s) 2209
BsoBI CYCGRG 1 cut(s) 2853
Bsp119I TTCGAA 2 cut(s) 2330, 2882
Bsp1286I GDGCHC 3 cut(s) 1104, 1664, 3357
Bsp1407I TGTACA 1 cut(s) 2465
Bsp19I CCATGG 2 cut(s) 2035, 3340
BspACI CCGC 7 cut(s) 434, 1182, 1495, 1756, 1758, 1878, 3363
BspANI GGCC 4 cut(s) 93, 134, 1125, 2784
BspCNI CTCAG 7 cut(s) 72, 338, 1048, 1875, 1950, 2952, 3425
BspDI ATCGAT 1 cut(s) 1455
BspFNI CGCG 2 cut(s) 266, 1758
BspLI GGNNCC 7 cut(s) 281, 1554, 2041, 2691, 2778, 2809, 3429
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 2 cut(s) 642, 3124
BspQI GCTCTTC 2 cut(s) 1109, 3273
BspT104I TTCGAA 2 cut(s) 2330, 2882
BspT107I GGYRCC 2 cut(s) 279, 2689
BspTNI GGTCTC 1 cut(s) 2209
BsrDI GCAATG 5 cut(s) 874, 1177, 1359, 1395, 2369
BsrGI TGTACA 1 cut(s) 2465
BsrI ACTGG 2 cut(s) 45, 3035
BssECI CCNNGG 7 cut(s) 1556, 1756, 2035, 2725, 3214, 3340, 3442
BssNI GRCGYC 1 cut(s) 3333
BssSI CACGAG 1 cut(s) 2017
BssT1I CCWWGG 4 cut(s) 1556, 2035, 3214, 3340
Bst2BI CACGAG 1 cut(s) 2017
Bst2UI CCWGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
Bst4CI ACNGT 6 cut(s) 724, 1035, 2827, 2990, 3301, 3432
Bst6I CTCTTC 5 cut(s) 1109, 1519, 3141, 3228, 3273
BstACI GRCGYC 1 cut(s) 3333
BstAPI GCANNNNNTGC 1 cut(s) 476
BstAUI TGTACA 1 cut(s) 2465
BstBAI YACGTR 2 cut(s) 73, 2563
BstBI TTCGAA 2 cut(s) 2330, 2882
BstC8I GCNNGC 4 cut(s) 1026, 1116, 2890, 3370
BstDSI CCRYGG 3 cut(s) 1756, 2035, 3340
BstEII GGTNACC 1 cut(s) 2490
BstFNI CGCG 2 cut(s) 266, 1758
BstMAI GTCTC 8 cut(s) 159, 555, 1879, 2053, 2209, 2216, 2477, 2561
BstMWI GCNNNNNNNGC 6 cut(s) 208, 476, 485, 1561, 2790, 2799
BstNI CCWGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
BstNSI RCATGY 2 cut(s) 1654, 1660
BstPI GGTNACC 1 cut(s) 2490
BstSCI CCNGG 6 cut(s) 994, 1644, 2724, 2779, 2995, 3442
BstSFI CTRYAG 2 cut(s) 209, 3174
BstSLI GKGCMC 1 cut(s) 1664
BstUI CGCG 2 cut(s) 266, 1758
BstV1I GCAGC 5 cut(s) 29, 423, 771, 3330, 3377
BstV2I GAAGAC 3 cut(s) 343, 3015, 3396
BstX2I RGATCY 3 cut(s) 481, 1926, 2039
BstYI RGATCY 3 cut(s) 481, 1926, 2039
Bsu15I ATCGAT 1 cut(s) 1455
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 4 cut(s) 93, 134, 1125, 2784
BsuTUI ATCGAT 1 cut(s) 1455
BtgI CCRYGG 3 cut(s) 1756, 2035, 3340
BtgZI GCGATG 2 cut(s) 697, 3078
BtsIMutI CAGTG 2 cut(s) 114, 3028
BveI ACCTGC 2 cut(s) 642, 3124
Cac8I GCNNGC 4 cut(s) 1026, 1116, 2890, 3370
Cfr13I GGNCC 4 cut(s) 133, 952, 2808, 3428
Cfr42I CCGCGG 1 cut(s) 1759
ClaI ATCGAT 1 cut(s) 1455
CseI GACGC 2 cut(s) 255, 3322
Csp6I GTAC 5 cut(s) 48, 520, 576, 2466, 2611
CspCI CAANNNNNGTGG 2 cut(s) 1346, 1381
CviQI GTAC 5 cut(s) 48, 520, 576, 2466, 2611
DriI GACNNNNNGTC 2 cut(s) 265, 393
EaeI YGGCCR 2 cut(s) 1123, 2782
Eam1104I CTCTTC 5 cut(s) 1109, 1519, 3141, 3228, 3273
Eam1105I GACNNNNNGTC 2 cut(s) 265, 393
EarI CTCTTC 5 cut(s) 1109, 1519, 3141, 3228, 3273
Ecl136II GAGCTC 1 cut(s) 1102
Eco130I CCWWGG 4 cut(s) 1556, 2035, 3214, 3340
Eco24I GRGCYC 1 cut(s) 1104
Eco31I GGTCTC 1 cut(s) 2209
Eco32I GATATC 1 cut(s) 3295
Eco47I GGWCC 3 cut(s) 952, 2808, 3428
Eco53kI GAGCTC 1 cut(s) 1102
Eco57I CTGAAG 1 cut(s) 1090
Eco72I CACGTG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 2853
Eco91I GGTNACC 1 cut(s) 2490
EcoICRI GAGCTC 1 cut(s) 1102
EcoO109I RGGNCCY 1 cut(s) 2808
EcoO65I GGTNACC 1 cut(s) 2490
EcoRI GAATTC 2 cut(s) 1970, 2232
EcoRII CCWGG 6 cut(s) 994, 1644, 2724, 2779, 2995, 3442
EcoRV GATATC 1 cut(s) 3295
EcoT14I CCWWGG 4 cut(s) 1556, 2035, 3214, 3340
EcoT22I ATGCAT 2 cut(s) 615, 1705
EcoT38I GRGCYC 1 cut(s) 1104
ErhI CCWWGG 4 cut(s) 1556, 2035, 3214, 3340
FaqI GGGAC 4 cut(s) 1499, 2742, 3233, 3441
FbaI TGATCA 2 cut(s) 331, 3046
FblI GTMKAC 1 cut(s) 2010
Fnu4HI GCNGC 5 cut(s) 18, 437, 760, 3319, 3366
FriOI GRGCYC 1 cut(s) 1104
Fsp4HI GCNGC 5 cut(s) 18, 437, 760, 3319, 3366
GluI GCNGC 5 cut(s) 18, 437, 760, 3319, 3366
GsuI CTGGAG 1 cut(s) 3052
HaeIII GGCC 4 cut(s) 93, 134, 1125, 2784
HapII CCGG 2 cut(s) 147, 3330
HgaI GACGC 2 cut(s) 255, 3322
Hin1I GRCGYC 1 cut(s) 3333
HincII GTYRAC 2 cut(s) 142, 657
HindII GTYRAC 2 cut(s) 142, 657
HpaII CCGG 2 cut(s) 147, 3330
HphI GGTGA 7 cut(s) 307, 457, 1298, 1480, 3011, 3352, 3373
Hpy166II GTNNAC 9 cut(s) 142, 578, 657, 727, 1784, 2011, 2466, 3263, 3435
Hpy8I GTNNAC 9 cut(s) 142, 578, 657, 727, 1784, 2011, 2466, 3263, 3435
HpyAV CCTTC 9 cut(s) 185, 436, 442, 746, 1628, 1926, 2996, 3343, 3418
HpyCH4III ACNGT 6 cut(s) 724, 1035, 2827, 2990, 3301, 3432
HpyCH4IV ACGT 2 cut(s) 72, 2562
HpyF10VI GCNNNNNNNGC 6 cut(s) 208, 476, 485, 1561, 2790, 2799
HpySE526I ACGT 2 cut(s) 72, 2562
Hsp92I GRCGYC 1 cut(s) 3333
Ksp22I TGATCA 2 cut(s) 331, 3046
KspI CCGCGG 1 cut(s) 1759
LguI GCTCTTC 2 cut(s) 1109, 3273
LmnI GCTCC 3 cut(s) 598, 1099, 1552
Lsp1109I GCAGC 5 cut(s) 29, 423, 771, 3330, 3377
LweI GCATC 7 cut(s) 889, 952, 1488, 1588, 1704, 2326, 3129
MaeII ACGT 2 cut(s) 72, 2562
MaeIII GTNAC 8 cut(s) 642, 1051, 2490, 2558, 2622, 3051, 3301, 3358
MfeI CAATTG 4 cut(s) 1431, 1629, 2181, 2917
MflI RGATCY 3 cut(s) 481, 1926, 2039
MhlI GDGCHC 3 cut(s) 1104, 1664, 3357
MlsI TGGCCA 2 cut(s) 1125, 2784
MluI ACGCGT 1 cut(s) 264
MluNI TGGCCA 2 cut(s) 1125, 2784
MlyI GAGTC 5 cut(s) 533, 1313, 1583, 2946, 3215
MmeI TCCRAC 3 cut(s) 586, 2935, 3148
Mox20I TGGCCA 2 cut(s) 1125, 2784
Mph1103I ATGCAT 2 cut(s) 615, 1705
MroXI GAANNNNTTC 3 cut(s) 613, 1275, 1533
MscI TGGCCA 2 cut(s) 1125, 2784
MslI CAYNNNNRTG 3 cut(s) 274, 1655, 2120
Msp20I TGGCCA 2 cut(s) 1125, 2784
MspA1I CMGCKG 3 cut(s) 436, 1758, 1878
MspI CCGG 2 cut(s) 147, 3330
MspR9I CCNGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
MunI CAATTG 4 cut(s) 1431, 1629, 2181, 2917
Mva1269I GAATGC 4 cut(s) 613, 615, 1440, 2890
MvaI CCWGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
MvnI CGCG 2 cut(s) 266, 1758
MwoI GCNNNNNNNGC 6 cut(s) 208, 476, 485, 1561, 2790, 2799
NcoI CCATGG 2 cut(s) 2035, 3340
NlaIV GGNNCC 7 cut(s) 281, 1554, 2041, 2691, 2778, 2809, 3429
NmuCI GTSAC 2 cut(s) 2558, 3358
NsiI ATGCAT 2 cut(s) 615, 1705
NspI RCATGY 2 cut(s) 1654, 1660
NspV TTCGAA 2 cut(s) 2330, 2882
PacI TTAATTAA 1 cut(s) 888
PaeR7I CTCGAG 1 cut(s) 2853
PaqCI CACCTGC 1 cut(s) 3124
PciI ACATGT 1 cut(s) 1656
PciSI GCTCTTC 2 cut(s) 1109, 3273
PcsI WCGNNNNNNNCGW 2 cut(s) 160, 177
PctI GAATGC 4 cut(s) 613, 615, 1440, 2890
PdmI GAANNNNTTC 3 cut(s) 613, 1275, 1533
PfeI GAWTC 8 cut(s) 1091, 1510, 1544, 1820, 2681, 2897, 3151, 3179
PfoI TCCNGGA 2 cut(s) 994, 1644
PkrI GCNGC 5 cut(s) 19, 438, 761, 3320, 3367
PleI GAGTC 5 cut(s) 532, 1313, 1583, 2945, 3215
PmaCI CACGTG 1 cut(s) 73
PmlI CACGTG 1 cut(s) 73
PpsI GAGTC 5 cut(s) 532, 1313, 1583, 2945, 3215
Ppu21I YACGTR 2 cut(s) 73, 2563
PpuMI RGGWCCY 1 cut(s) 2808
PscI ACATGT 1 cut(s) 1656
PshBI ATTAAT 2 cut(s) 633, 884
Psp124BI GAGCTC 1 cut(s) 1104
Psp5II RGGWCCY 1 cut(s) 2808
Psp6I CCWGG 6 cut(s) 994, 1644, 2724, 2779, 2995, 3442
PspCI CACGTG 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 2490
PspGI CCWGG 6 cut(s) 994, 1644, 2724, 2779, 2995, 3442
PspN4I GGNNCC 7 cut(s) 281, 1554, 2041, 2691, 2778, 2809, 3429
PspPI GGNCC 4 cut(s) 133, 952, 2808, 3428
PspPPI RGGWCCY 1 cut(s) 2808
PspXI VCTCGAGB 1 cut(s) 2853
PsrI GAACNNNNNNTAC 4 cut(s) 1713, 1745, 2263, 2295
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 3 cut(s) 481, 1926, 2039
RsaI GTAC 5 cut(s) 49, 521, 577, 2467, 2612
RsaNI GTAC 5 cut(s) 48, 520, 576, 2466, 2611
RseI CAYNNNNRTG 3 cut(s) 274, 1655, 2120
SacI GAGCTC 1 cut(s) 1104
SacII CCGCGG 1 cut(s) 1759
SapI GCTCTTC 2 cut(s) 1109, 3273
SatI GCNGC 5 cut(s) 18, 437, 760, 3319, 3366
Sau96I GGNCC 4 cut(s) 133, 952, 2808, 3428
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 5 cut(s) 533, 1313, 1583, 2946, 3215
ScrFI CCNGG 6 cut(s) 996, 1646, 2726, 2781, 2997, 3444
SduI GDGCHC 3 cut(s) 1104, 1664, 3357
SfaNI GCATC 7 cut(s) 889, 952, 1488, 1588, 1704, 2326, 3129
SfcI CTRYAG 2 cut(s) 209, 3174
Sfr274I CTCGAG 1 cut(s) 2853
Sfr303I CCGCGG 1 cut(s) 1759
SfuI TTCGAA 2 cut(s) 2330, 2882
SgrBI CCGCGG 1 cut(s) 1759
SinI GGWCC 3 cut(s) 952, 2808, 3428
SlaI CTCGAG 1 cut(s) 2853
SmiMI CAYNNNNRTG 3 cut(s) 274, 1655, 2120
SmlI CTYRAG 3 cut(s) 618, 2219, 2853
SmoI CTYRAG 3 cut(s) 618, 2219, 2853
SsiI CCGC 7 cut(s) 434, 1182, 1495, 1756, 1758, 1878, 3363
SspI AATATT 2 cut(s) 747, 1157
SstI GAGCTC 1 cut(s) 1104
StyD4I CCNGG 6 cut(s) 994, 1644, 2724, 2779, 2995, 3442
StyI CCWWGG 4 cut(s) 1556, 2035, 3214, 3340
TaaI ACNGT 6 cut(s) 724, 1035, 2827, 2990, 3301, 3432
TaiI ACGT 2 cut(s) 75, 2565
TaqII GACCGA 1 cut(s) 3390
TatI WGTACW 3 cut(s) 47, 2465, 2610
TfiI GAWTC 8 cut(s) 1091, 1510, 1544, 1820, 2681, 2897, 3151, 3179
TscAI CASTG 2 cut(s) 121, 3035
TseFI GTSAC 2 cut(s) 2558, 3358
TseI GCWGC 5 cut(s) 17, 436, 759, 3318, 3365
Tsp45I GTSAC 2 cut(s) 2558, 3358
TspDTI ATGAA 9 cut(s) 189, 872, 992, 2093, 2520, 2988, 3081, 3104, 3243
TspGWI ACGGA 4 cut(s) 965, 1622, 1637, 1726
TspRI CASTG 2 cut(s) 121, 3035
VpaK11BI GGWCC 3 cut(s) 952, 2808, 3428
VspI ATTAAT 2 cut(s) 633, 884
XapI RAATTY 4 cut(s) 1772, 1808, 1970, 2232
XbaI TCTAGA 1 cut(s) 1990
XceI RCATGY 2 cut(s) 1654, 1660
XcmI CCANNNNNNNNNTGG 1 cut(s) 2042
XhoI CTCGAG 1 cut(s) 2853
XmiI GTMKAC 1 cut(s) 2010
XmnI GAANNNNTTC 3 cut(s) 613, 1275, 1533
ZrmI AGTACT 1 cut(s) 49
Zsp2I ATGCAT 2 cut(s) 615, 1705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.