RLG00000028770

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
27707095 .. 27737658
30564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028770

Sequence Viewer

Length: 2823 bp
ATGCCTGGTGAAGCCTCCTCTTCCAATTCTCCTCCTTGTCCATTTAGCTACGACGTGTTCCTCAGTTTCAGAGGCGAAGACACCCGCAAGACTTTCACCGACCACCTCTACACGGCCCTGGTCAACGCCGGAATCCGCACTTTCCGAGACGACGACGAAATCGAGAGAGGACGCGACATCAAGCCGGAGCTGAACAAAGCCATCCACCGATCACGCAGCTCCGTCGTCGTCTTTTCCAAAGACTACGCCTCTTCCCGATGGTGCCTCGACGAGCTTGTCGTCGTTCTCCAACGCCACGCCGACGACGCTCGCGGTCATGTCGTTTTCCCGGTGTTCTACGACATCGATCCGTCTCATGTGAGGAAGCAGACCGGAAGTTTTGCCGCAGCTTTTGCTAGACACCGGAAAACTCAATCGCCGGACAAGGTGAAGGAATGGAGGGAAGCACTTGCACAAGTTGCAGATCTGGCTGGGATGGTCTTGCAGAACCAAGCTGATGGGTACGAATCAAAGTTTATCCAAAAGATTGTTAAAGTGATTGGAGGAAAACTAAGTCACACTCCCTTGACTGTTGCCCCAAACCTGATTGGCATCCATTCTCGAGCTCAGCAAGTTACTAAGGTGCATAATGTTGAAACTTTGGATTATGAGGAATCATTGGAACTCTTCAGTTGGCATGCTTTCGGGCAGGACCTTCCCATCGAAGGTTACGTGAAACTTTCAGAGAAAGTAGTACACCAGAGCGGAGGACTTCCATATAACATTGTGAGGTTACTAGATGAGTGCAATTTGTATACTACTGTTGGCATTCAGAATCTTGTTGATAGAGGTTTAGTAACCATTGACGGATATGATAAGGTGCAGATGCATGATGTTATCTGTGACACGGGAAGAGGAATTGTTCGCCAAGAATCAGAGGATCCTGAAAAACGCAGTAGGTTATGGCATTATAAGGATTCTATCAACGTACTCACAGAAAAGAATGGTACAAAAAAAATTCAAGGTCTTGAATTAAACATGCAAAGGCAACTTGGAGTCACTACTCCTTCAATATATTTGAATGAGATCGTCTTGGAAACCAATGCATTTGCAAGGATGCACAAACTAAGACTACTCCGGCTTAGTCATGTAAAACTCACCGGCTGCTACGAAGAAATTCCTACAGGATTGAGAATGTTATGTTGGATTGCATTTCCTCTGGACGCTATACCAATTGATTTTCATTTGGAGAACCTAGTTGTTCTGGAAATGCAGTATAGCAGCTTGAGACAAATCTTGGATGGAACAAAGTGTTTTCCATCCTTGAAGATCCTTGATCTCAGCCATTCTCATGACCTTATTGCAACTGTTGACTTCTCTCTTTGTCCCAATCTAGAGAAACTGATTCTTATCGATTGTGAAGGCTTGATTGACGTCCATGAATCCATTGGAAACCTAGACAGACTTATTTATTTGAATATGAAAGACTGCAAAAGTCTTAGGAGGCTGCCAAAGACCATTGGTATGCTAAAGCTACTTGACACACTTATTATATCCGGTTGTTCAAATCTTGATAACTCTTCAATAGAGGTAATTAAGAGCATTGAGTCTCTGAAAGTGCTTGAATTGGATAGAATTCCAATGAGTCAGTTATTCGCTCCCCACGGGGAGGTCAAATCAGGGACTTATTTACCATGCTCTTTATTATCTTTGAGTCTTAGTGGGTGCAATCTTTCAGATGATGCTTTTCCTGTGGATTTTTCTAGCCTATCCTTATTGAGAAGTTTAAATCTAAGTGAGAATCCAATTTCTGGCCTACCATATTGCATCAAGGGTATGACAAGCCTAGAAGAGCTCTCTTTTTACAATTGTTTGAGGCTTGAATCCCTTCTAGAGCTACCAAAAGTACGCAACGAGTTGAATGTGTCAGGTTGCGAAGCATTGGTAAAAATAACATATCAGTCAAATTCGTATGCCCAATTTCCACGCCGAAGTGGTAAGAATCACAGCCTATGTGAGTGGGAATACGAATACAAGTTAGAACCTATTGGGAGAGTTGATGTAGAAATGCTCAACCTTTTGGGCTTGAGCAAATTGGACTTCGAATTTATGCCAAATGTTCGGATGTGCAAACCATATCAAGGTTACGACATACTCCATCAGGGTGGTATCCAGGGACTGCATGAGTATGATTGTACATACTCATATATTCGAGGAAATGCAAGAAAGATAAATATGTTCAGCACATTTCTTCCTGGAAATGCTGTTCCAGGCCAATTCAGCCATAGAACCAAAGGCTCCTCCTCAATATCATTAACCTTGCCTTTGCCTTCACTTCCCCATATCAGAATCCGAGGCTTTAACATCTTCATTATCTATGCAATTTCTGATAACGACGATGAAAGATATTCTTCTAGTAGTGACCAGGATAAAAAAGAAGATGATGAAGAAGAGGCAGTGGGTGATCCTATTCCTGCATCCGCAATTGGGGATGGCAGCAACAACAGGGATCGGGGTCTCAGAAAGTGGAAGGTGCTAATCATTGCCGCTATCATCCTTGCCGCTGCCATCAGTGTTGCTCATCGTTTTGAGGCCTCTGATCTAGACACAAATCTAGCTGAAACAGTCACTAATGCAGACAACAAAGAAGAACAACGAGATGAAGATGACAAGCTTGCCGCAGCGACCAATACTGATGGCAGTAACAATCGTGCGCGGGATCCCAAAAAATGGAAGGTGCTCATCATTGCTGCTGTCATGTTAATTCTCTGTTTATCTTTTCTCTGGTTCTTCTTTTTCTCCGCCAGAGACAGATACATGGAGTCCATTTTGGTTCCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

941

Amino Acids

105.93

Weight (kDa)

5.81

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 17 - 188 7.3e-52 TIR domain
TIR_2 PF13676 19 - 118 4.6e-17 TIR domain
WHD_ROQ1 PF23282 255 - 305 2.3e-15 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 951
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 1416
AccB1I GGYRCC 1 cut(s) 261
AccB7I CCANNNNNTGG 2 cut(s) 1790, 2709
AccBSI CCGCTC 1 cut(s) 744
AccI GTMKAC 1 cut(s) 794
AccII CGCG 3 cut(s) 174, 312, 2695
AclWI GGATC 8 cut(s) 341, 914, 927, 1303, 2438, 2496, 2693, 2706
AcsI RAATTY 5 cut(s) 996, 1155, 1614, 1945, 2084
AcuI CTGAAG 1 cut(s) 652
AcyI GRCGYC 1 cut(s) 1413
AfaI GTAC 6 cut(s) 503, 735, 969, 988, 1887, 2176
AfiI CCNNNNNNNGG 7 cut(s) 112, 704, 1648, 1790, 2120, 2466, 2709
AflIII ACRYGT 1 cut(s) 54
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 6 cut(s) 4, 117, 2151, 2233, 2248, 2403
AjuI GAANNNNNNNTTGG 2 cut(s) 1165, 1197
AloI GAACNNNNNNTCC 2 cut(s) 2229, 2261
Alw21I GWGCWC 3 cut(s) 607, 1836, 2721
Alw26I GTCTC 6 cut(s) 141, 357, 1261, 1593, 2501, 2781
AlwI GGATC 8 cut(s) 341, 914, 927, 1303, 2438, 2496, 2693, 2706
AlwNI CAGNNNCTG 1 cut(s) 2158
Ama87I CYCGRG 1 cut(s) 600
AoxI GGCC 4 cut(s) 114, 1792, 2251, 2571
ApeKI GCWGC 9 cut(s) 216, 386, 1143, 1260, 1486, 2475, 2543, 2660, 2729
ApoI RAATTY 5 cut(s) 996, 1155, 1614, 1945, 2084
Asp700I GAANNNNTTC 2 cut(s) 1155, 1866
AspLEI GCGC 1 cut(s) 2695
AspS9I GGNCC 2 cut(s) 115, 691
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 5 cut(s) 20, 88, 439, 1129, 2453
AsuII TTCGAA 1 cut(s) 2082
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 1 cut(s) 691
BamHI GGATCC 2 cut(s) 919, 2698
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 2 cut(s) 607, 1836
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 3 cut(s) 607, 1836, 2721
BbvI GCAGC 9 cut(s) 228, 398, 1130, 1272, 1473, 2487, 2530, 2672, 2716
BceAI ACGGC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 6 cut(s) 6, 119, 2153, 2235, 2250, 2405
BciVI GTATCC 1 cut(s) 2159
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 6 cut(s) 141, 357, 1261, 1593, 2501, 2781
BfmI CTRYAG 1 cut(s) 1161
BfuI GTATCC 1 cut(s) 2159
BglII AGATCT 1 cut(s) 463
BlpI GCTNAGC 1 cut(s) 606
Bme1390I CCNGG 7 cut(s) 6, 119, 329, 2153, 2235, 2250, 2405
Bme18I GGWCC 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 600
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 115, 691
BmiI GGNNCC 5 cut(s) 263, 921, 2278, 2700, 2814
BmrFI CCNGG 7 cut(s) 6, 119, 329, 2153, 2235, 2250, 2405
BmsI GCATC 6 cut(s) 600, 855, 1086, 1711, 1815, 2465
BpiI GAAGAC 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 2082
BpuEI CTTGAG 2 cut(s) 1285, 2086
BpuMI CCSGG 1 cut(s) 329
Bsa29I ATCGAT 2 cut(s) 345, 1392
BsaAI YACGTR 1 cut(s) 712
BsaBI GATNNNNATC 2 cut(s) 590, 1388
BsaHI GRCGYC 1 cut(s) 1413
BsaI GGTCTC 1 cut(s) 2501
BsaJI CCNNGG 4 cut(s) 117, 1642, 2152, 2332
BsaWI WCCGGW 3 cut(s) 371, 402, 1535
Bsc4I CCNNNNNNNGG 7 cut(s) 112, 704, 1648, 1790, 2120, 2466, 2709
Bse118I RCCGGY 1 cut(s) 1139
Bse3DI GCAATG 2 cut(s) 2520, 2724
Bse8I GATNNNNATC 2 cut(s) 590, 1388
BseBI CCWGG 6 cut(s) 6, 119, 2153, 2235, 2250, 2405
BseCI ATCGAT 2 cut(s) 345, 1392
BseDI CCNNGG 4 cut(s) 117, 1642, 2152, 2332
BseJI GATNNNNATC 2 cut(s) 590, 1388
BseLI CCNNNNNNNGG 7 cut(s) 112, 704, 1648, 1790, 2120, 2466, 2709
BseMI GCAATG 2 cut(s) 2520, 2724
BseMII CTCAG 4 cut(s) 76, 620, 1333, 2512
BseRI GAGGAG 4 cut(s) 7, 21, 2269, 2272
BseXI GCAGC 9 cut(s) 228, 398, 1130, 1272, 1473, 2487, 2530, 2672, 2716
BseYI CCCAGC 1 cut(s) 470
BsgI GTGCAG 1 cut(s) 881
Bsh1236I CGCG 3 cut(s) 174, 312, 2695
BshFI GGCC 4 cut(s) 116, 1794, 2253, 2573
BshNI GGYRCC 1 cut(s) 261
BshVI ATCGAT 2 cut(s) 345, 1392
BsiHKAI GWGCWC 3 cut(s) 607, 1836, 2721
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 9 cut(s) 129, 185, 329, 372, 403, 419, 1117, 1140, 1536
BslFI GGGAC 3 cut(s) 1350, 1675, 2169
BslI CCNNNNNNNGG 7 cut(s) 112, 704, 1648, 1790, 2120, 2466, 2709
BsmAI GTCTC 6 cut(s) 141, 357, 1261, 1593, 2501, 2781
BsmBI CGTCTC 2 cut(s) 141, 357
BsmFI GGGAC 3 cut(s) 1350, 1675, 2169
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 4 cut(s) 116, 1794, 2253, 2573
Bso31I GGTCTC 1 cut(s) 2501
BsoBI CYCGRG 1 cut(s) 600
Bsp119I TTCGAA 1 cut(s) 2082
Bsp1286I GDGCHC 3 cut(s) 607, 1836, 2721
Bsp1407I TGTACA 1 cut(s) 2174
Bsp1720I GCTNAGC 1 cut(s) 606
BspANI GGCC 4 cut(s) 116, 1794, 2253, 2573
BspCNI CTCAG 4 cut(s) 75, 619, 1332, 2511
BspDI ATCGAT 2 cut(s) 345, 1392
BspFNI CGCG 3 cut(s) 174, 312, 2695
BspHI TCATGA 1 cut(s) 1330
BspLI GGNNCC 5 cut(s) 263, 921, 2278, 2700, 2814
BspPI GGATC 8 cut(s) 341, 914, 927, 1303, 2438, 2496, 2693, 2706
BspQI GCTCTTC 1 cut(s) 1824
BspT104I TTCGAA 1 cut(s) 2082
BspT107I GGYRCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 2501
BsrBI CCGCTC 1 cut(s) 744
BsrDI GCAATG 2 cut(s) 2520, 2724
BsrFI RCCGGY 1 cut(s) 1139
BsrGI TGTACA 1 cut(s) 2174
BssAI RCCGGY 1 cut(s) 1139
BssECI CCNNGG 4 cut(s) 117, 1642, 2152, 2332
BssNAI GTATAC 1 cut(s) 795
BssNI GRCGYC 1 cut(s) 1413
Bst1107I GTATAC 1 cut(s) 795
Bst2UI CCWGG 6 cut(s) 6, 119, 2153, 2235, 2250, 2405
Bst4CI ACNGT 4 cut(s) 571, 802, 1348, 2605
Bst6I CTCTTC 7 cut(s) 25, 256, 671, 886, 1564, 1824, 2424
BstACI GRCGYC 1 cut(s) 1413
BstAPI GCANNNNNTGC 2 cut(s) 392, 458
BstAUI TGTACA 1 cut(s) 2174
BstBAI YACGTR 1 cut(s) 712
BstBI TTCGAA 1 cut(s) 2082
BstC8I GCNNGC 3 cut(s) 310, 678, 2655
BstDSI CCRYGG 1 cut(s) 1642
BstFNI CGCG 3 cut(s) 174, 312, 2695
BstHHI GCGC 1 cut(s) 2695
BstMAI GTCTC 6 cut(s) 141, 357, 1261, 1593, 2501, 2781
BstMWI GCNNNNNNNGC 5 cut(s) 305, 392, 458, 467, 2259
BstNI CCWGG 6 cut(s) 6, 119, 2153, 2235, 2250, 2405
BstNSI RCATGY 2 cut(s) 680, 1021
BstSCI CCNGG 7 cut(s) 4, 117, 327, 2151, 2233, 2248, 2403
BstSFI CTRYAG 1 cut(s) 1161
BstUI CGCG 3 cut(s) 174, 312, 2695
BstV1I GCAGC 9 cut(s) 228, 398, 1130, 1272, 1473, 2487, 2530, 2672, 2716
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 4 cut(s) 463, 919, 1308, 2698
BstXI CCANNNNNNTGG 2 cut(s) 497, 2144
BstYI RGATCY 4 cut(s) 463, 919, 1308, 2698
BstZ17I GTATAC 1 cut(s) 795
Bsu15I ATCGAT 2 cut(s) 345, 1392
BsuI GTATCC 1 cut(s) 2159
BsuRI GGCC 4 cut(s) 116, 1794, 2253, 2573
BsuTUI ATCGAT 2 cut(s) 345, 1392
BtgI CCRYGG 1 cut(s) 1642
BtrI CACGTC 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 2442
BtsIMutI CAGTG 2 cut(s) 2442, 2557
Cac8I GCNNGC 3 cut(s) 310, 678, 2655
CaiI CAGNNNCTG 1 cut(s) 2158
CciI TCATGA 1 cut(s) 1330
CfoI GCGC 1 cut(s) 2695
Cfr10I RCCGGY 1 cut(s) 1139
Cfr13I GGNCC 2 cut(s) 115, 691
ClaI ATCGAT 2 cut(s) 345, 1392
CseI GACGC 3 cut(s) 180, 314, 1211
Csp6I GTAC 6 cut(s) 502, 734, 968, 987, 1886, 2175
CviQI GTAC 6 cut(s) 502, 734, 968, 987, 1886, 2175
DraI TTTAAA 1 cut(s) 1767
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 7 cut(s) 25, 256, 671, 886, 1564, 1824, 2424
EarI CTCTTC 7 cut(s) 25, 256, 671, 886, 1564, 1824, 2424
EciI GGCGGA 1 cut(s) 2770
Ecl136II GAGCTC 2 cut(s) 605, 1834
Eco147I AGGCCT 1 cut(s) 2573
Eco24I GRGCYC 2 cut(s) 607, 1836
Eco31I GGTCTC 1 cut(s) 2501
Eco47I GGWCC 1 cut(s) 691
Eco53kI GAGCTC 2 cut(s) 605, 1834
Eco57I CTGAAG 1 cut(s) 652
Eco88I CYCGRG 1 cut(s) 600
EcoICRI GAGCTC 2 cut(s) 605, 1834
EcoO109I RGGNCCY 1 cut(s) 691
EcoRI GAATTC 1 cut(s) 1614
EcoRII CCWGG 6 cut(s) 4, 117, 2151, 2233, 2248, 2403
EcoT22I ATGCAT 2 cut(s) 870, 1087
EcoT38I GRGCYC 2 cut(s) 607, 1836
Esp3I CGTCTC 2 cut(s) 141, 357
FalI AAGNNNNNCTT 2 cut(s) 2374, 2406
FaqI GGGAC 3 cut(s) 1350, 1675, 2169
FauI CCCGC 2 cut(s) 92, 2688
FblI GTMKAC 1 cut(s) 794
FriOI GRGCYC 2 cut(s) 607, 1836
GlaI GCGC 1 cut(s) 2694
GsaI CCCAGC 1 cut(s) 474
HaeIII GGCC 4 cut(s) 116, 1794, 2253, 2573
HapII CCGG 9 cut(s) 129, 185, 329, 372, 403, 419, 1117, 1140, 1536
HgaI GACGC 3 cut(s) 180, 314, 1211
HhaI GCGC 1 cut(s) 2695
Hin1I GRCGYC 1 cut(s) 1413
Hin6I GCGC 1 cut(s) 2693
HinP1I GCGC 1 cut(s) 2693
HincII GTYRAC 2 cut(s) 124, 1351
HindII GTYRAC 2 cut(s) 124, 1351
HindIII AAGCTT 1 cut(s) 2651
HpaII CCGG 9 cut(s) 129, 185, 329, 372, 403, 419, 1117, 1140, 1536
HphI GGTGA 5 cut(s) 20, 88, 439, 1129, 2453
Hpy166II GTNNAC 4 cut(s) 124, 736, 795, 1351
Hpy8I GTNNAC 4 cut(s) 124, 736, 795, 1351
HpyAV CCTTC 9 cut(s) 424, 698, 704, 1056, 1394, 1877, 2319, 2503, 2707
HpyCH4III ACNGT 4 cut(s) 571, 802, 1348, 2605
HpyCH4IV ACGT 4 cut(s) 54, 711, 966, 1413
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 392, 458, 467, 2259
HpySE526I ACGT 4 cut(s) 54, 711, 966, 1413
Hsp92I GRCGYC 1 cut(s) 1413
HspAI GCGC 1 cut(s) 2693
LguI GCTCTTC 1 cut(s) 1824
LmnI GCTCC 4 cut(s) 187, 224, 1642, 2282
Lsp1109I GCAGC 9 cut(s) 228, 398, 1130, 1272, 1473, 2487, 2530, 2672, 2716
LweI GCATC 6 cut(s) 600, 855, 1086, 1711, 1815, 2465
MaeII ACGT 4 cut(s) 54, 711, 966, 1413
MbiI CCGCTC 1 cut(s) 744
MfeI CAATTG 3 cut(s) 1212, 1846, 2463
MflI RGATCY 4 cut(s) 463, 919, 1308, 2698
MhlI GDGCHC 3 cut(s) 607, 1836, 2721
MlyI GAGTC 5 cut(s) 1044, 1595, 1633, 1702, 2810
MmeI TCCRAC 2 cut(s) 313, 1163
Mph1103I ATGCAT 2 cut(s) 870, 1087
MroXI GAANNNNTTC 2 cut(s) 1155, 1866
MseI TTAA 7 cut(s) 531, 1013, 1575, 1766, 2294, 2340, 2741
MslI CAYNNNNRTG 4 cut(s) 1329, 1502, 2142, 2166
MspA1I CMGCKG 1 cut(s) 2543
MspI CCGG 9 cut(s) 129, 185, 329, 372, 403, 419, 1117, 1140, 1536
MspR9I CCNGG 7 cut(s) 6, 119, 329, 2153, 2235, 2250, 2405
MunI CAATTG 3 cut(s) 1212, 1846, 2463
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 6 cut(s) 6, 119, 2153, 2235, 2250, 2405
MvnI CGCG 3 cut(s) 174, 312, 2695
MwoI GCNNNNNNNGC 5 cut(s) 305, 392, 458, 467, 2259
NciI CCSGG 1 cut(s) 329
NlaIV GGNNCC 5 cut(s) 263, 921, 2278, 2700, 2814
NmuCI GTSAC 5 cut(s) 554, 881, 1036, 2399, 2605
NsiI ATGCAT 2 cut(s) 870, 1087
NspI RCATGY 2 cut(s) 680, 1021
NspV TTCGAA 1 cut(s) 2082
PaeI GCATGC 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 600
PagI TCATGA 1 cut(s) 1330
PceI AGGCCT 1 cut(s) 2573
PciSI GCTCTTC 1 cut(s) 1824
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 276, 708
PctI GAATGC 1 cut(s) 807
PdmI GAANNNNTTC 2 cut(s) 1155, 1866
PflMI CCANNNNNTGG 2 cut(s) 1790, 2709
PfoI TCCNGGA 1 cut(s) 2233
PleI GAGTC 5 cut(s) 1043, 1594, 1632, 1701, 2809
PpsI GAGTC 5 cut(s) 1043, 1594, 1632, 1701, 2809
Ppu21I YACGTR 1 cut(s) 712
PpuMI RGGWCCY 1 cut(s) 691
PsiI TTATAA 1 cut(s) 951
Psp124BI GAGCTC 2 cut(s) 607, 1836
Psp5II RGGWCCY 1 cut(s) 691
Psp6I CCWGG 6 cut(s) 4, 117, 2151, 2233, 2248, 2403
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 6 cut(s) 4, 117, 2151, 2233, 2248, 2403
PspN4I GGNNCC 5 cut(s) 263, 921, 2278, 2700, 2814
PspPI GGNCC 2 cut(s) 115, 691
PspPPI RGGWCCY 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 2158
PsuI RGATCY 4 cut(s) 463, 919, 1308, 2698
RsaI GTAC 6 cut(s) 503, 735, 969, 988, 1887, 2176
RsaNI GTAC 6 cut(s) 502, 734, 968, 987, 1886, 2175
RseI CAYNNNNRTG 4 cut(s) 1329, 1502, 2142, 2166
SacI GAGCTC 2 cut(s) 607, 1836
SapI GCTCTTC 1 cut(s) 1824
SaqAI TTAA 7 cut(s) 531, 1013, 1575, 1766, 2294, 2340, 2741
Sau96I GGNCC 2 cut(s) 115, 691
SchI GAGTC 5 cut(s) 1044, 1595, 1633, 1702, 2810
ScrFI CCNGG 7 cut(s) 6, 119, 329, 2153, 2235, 2250, 2405
SduI GDGCHC 3 cut(s) 607, 1836, 2721
SfaNI GCATC 6 cut(s) 600, 855, 1086, 1711, 1815, 2465
SfcI CTRYAG 1 cut(s) 1161
Sfr274I CTCGAG 1 cut(s) 600
SfuI TTCGAA 1 cut(s) 2082
SinI GGWCC 1 cut(s) 691
SlaI CTCGAG 1 cut(s) 600
SmiMI CAYNNNNRTG 4 cut(s) 1329, 1502, 2142, 2166
SmlI CTYRAG 3 cut(s) 600, 1264, 2065
SmoI CTYRAG 3 cut(s) 600, 1264, 2065
SphI GCATGC 1 cut(s) 680
SseBI AGGCCT 1 cut(s) 2573
SstI GAGCTC 2 cut(s) 607, 1836
StuI AGGCCT 1 cut(s) 2573
StyD4I CCNGG 7 cut(s) 4, 117, 327, 2151, 2233, 2248, 2403
TaaI ACNGT 4 cut(s) 571, 802, 1348, 2605
TaiI ACGT 4 cut(s) 57, 714, 969, 1416
TaqI TCGA 8 cut(s) 162, 267, 345, 601, 702, 1392, 2082, 2191
TatI WGTACW 2 cut(s) 733, 2174
TauI GCSGC 4 cut(s) 386, 2528, 2543, 2660
Tru1I TTAA 7 cut(s) 531, 1013, 1575, 1766, 2294, 2340, 2741
Tru9I TTAA 7 cut(s) 531, 1013, 1575, 1766, 2294, 2340, 2741
TscAI CASTG 2 cut(s) 2442, 2557
TseFI GTSAC 5 cut(s) 554, 881, 1036, 2399, 2605
TseI GCWGC 9 cut(s) 216, 386, 1143, 1260, 1486, 2475, 2543, 2660, 2729
Tsp45I GTSAC 5 cut(s) 554, 881, 1036, 2399, 2605
TspDTI ATGAA 7 cut(s) 1211, 1434, 1475, 2338, 2394, 2439, 2655
TspGWI ACGGA 3 cut(s) 211, 339, 861
TspRI CASTG 2 cut(s) 2442, 2557
Van91I CCANNNNNTGG 2 cut(s) 1790, 2709
VpaK11BI GGWCC 1 cut(s) 691
XapI RAATTY 5 cut(s) 996, 1155, 1614, 1945, 2084
XbaI TCTAGA 3 cut(s) 1372, 1870, 2581
XceI RCATGY 2 cut(s) 680, 1021
XcmI CCANNNNNNNNNTGG 1 cut(s) 1424
XhoI CTCGAG 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 794
XmnI GAANNNNTTC 2 cut(s) 1155, 1866
ZraI GACGTC 1 cut(s) 1414
Zsp2I ATGCAT 2 cut(s) 870, 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.