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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1007 |
| AccB1I | GGYRCC | 1 cut(s) | 276 |
| AciI | CCGC | 2 cut(s) | 1176, 1179 |
| AclWI | GGATC | 3 cut(s) | 211, 353, 655 |
| AcoI | YGGCCR | 1 cut(s) | 1117 |
| AcuI | CTGAAG | 2 cut(s) | 67, 1052 |
| AcvI | CACGTG | 1 cut(s) | 370 |
| AfaI | GTAC | 2 cut(s) | 1076, 1167 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 372, 1136 |
| AflIII | ACRYGT | 2 cut(s) | 69, 715 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AjnI | CCWGG | 3 cut(s) | 199, 988, 1119 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1235, 1267 |
| AluBI | AGCT | 9 cut(s) | 81, 223, 289, 506, 741, 903, 1096, 1193, 1261 |
| AluI | AGCT | 9 cut(s) | 81, 223, 289, 506, 741, 903, 1096, 1193, 1261 |
| Alw26I | GTCTC | 1 cut(s) | 549 |
| AlwI | GGATC | 3 cut(s) | 211, 353, 655 |
| AoxI | GGCC | 2 cut(s) | 1117, 1180 |
| AspS9I | GGNCC | 4 cut(s) | 315, 325, 937, 946 |
| AsuC2I | CCSGG | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 1 cut(s) | 451 |
| AsuII | TTCGAA | 1 cut(s) | 251 |
| AvaII | GGWCC | 4 cut(s) | 315, 325, 937, 946 |
| BalI | TGGCCA | 1 cut(s) | 1119 |
| BanI | GGYRCC | 1 cut(s) | 276 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 840, 872 |
| BbrPI | CACGTG | 1 cut(s) | 370 |
| BbsI | GAAGAC | 3 cut(s) | 99, 337, 704 |
| BccI | CCATC | 5 cut(s) | 267, 376, 441, 503, 638 |
| BciT130I | CCWGG | 3 cut(s) | 201, 990, 1121 |
| BcnI | CCSGG | 1 cut(s) | 161 |
| BcoDI | GTCTC | 1 cut(s) | 549 |
| BfaI | CTAG | 4 cut(s) | 408, 479, 906, 1014 |
| BfmI | CTRYAG | 1 cut(s) | 206 |
| BglII | AGATCT | 1 cut(s) | 475 |
| BisI | GCNGC | 2 cut(s) | 1177, 1180 |
| BlsI | GCNGC | 2 cut(s) | 1178, 1181 |
| Bme1390I | CCNGG | 4 cut(s) | 161, 201, 990, 1121 |
| Bme18I | GGWCC | 4 cut(s) | 315, 325, 937, 946 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 4 cut(s) | 315, 325, 937, 946 |
| BmiI | GGNNCC | 2 cut(s) | 28, 278 |
| BmrFI | CCNGG | 4 cut(s) | 161, 201, 990, 1121 |
| BmsI | GCATC | 2 cut(s) | 946, 1044 |
| BpiI | GAAGAC | 3 cut(s) | 99, 337, 704 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 36 |
| Bpu14I | TTCGAA | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 4 cut(s) | 6, 97, 197, 597 |
| BpuMI | CCSGG | 1 cut(s) | 161 |
| BsaAI | YACGTR | 1 cut(s) | 370 |
| BsaBI | GATNNNNATC | 2 cut(s) | 357, 602 |
| BsaJI | CCNNGG | 1 cut(s) | 321 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 372, 1136 |
| Bse1I | ACTGG | 1 cut(s) | 341 |
| Bse3DI | GCAATG | 1 cut(s) | 705 |
| Bse8I | GATNNNNATC | 2 cut(s) | 357, 602 |
| BseBI | CCWGG | 3 cut(s) | 201, 990, 1121 |
| BseDI | CCNNGG | 1 cut(s) | 321 |
| BseGI | GGATG | 2 cut(s) | 266, 452 |
| BseJI | GATNNNNATC | 2 cut(s) | 357, 602 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 372, 1136 |
| BseMI | GCAATG | 1 cut(s) | 705 |
| BseMII | CTCAG | 1 cut(s) | 437 |
| BseNI | ACTGG | 1 cut(s) | 341 |
| BseRI | GAGGAG | 1 cut(s) | 198 |
| BshFI | GGCC | 2 cut(s) | 1119, 1182 |
| BshNI | GGYRCC | 1 cut(s) | 276 |
| BsiSI | CCGG | 1 cut(s) | 160 |
| BslFI | GGGAC | 2 cut(s) | 176, 349 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 372, 1136 |
| BsmAI | GTCTC | 1 cut(s) | 549 |
| BsmFI | GGGAC | 2 cut(s) | 176, 349 |
| BsnI | GGCC | 2 cut(s) | 1119, 1182 |
| Bsp119I | TTCGAA | 1 cut(s) | 251 |
| Bsp1407I | TGTACA | 1 cut(s) | 1165 |
| Bsp143I | GATC | 6 cut(s) | 216, 358, 475, 647, 784, 976 |
| BspACI | CCGC | 2 cut(s) | 1176, 1179 |
| BspANI | GGCC | 2 cut(s) | 1119, 1182 |
| BspCNI | CTCAG | 1 cut(s) | 436 |
| BspLI | GGNNCC | 2 cut(s) | 28, 278 |
| BspMAI | CTGCAG | 1 cut(s) | 210 |
| BspPI | GGATC | 3 cut(s) | 211, 353, 655 |
| BspT104I | TTCGAA | 1 cut(s) | 251 |
| BspT107I | GGYRCC | 1 cut(s) | 276 |
| BsrDI | GCAATG | 1 cut(s) | 705 |
| BsrGI | TGTACA | 1 cut(s) | 1165 |
| BsrI | ACTGG | 1 cut(s) | 341 |
| BssECI | CCNNGG | 1 cut(s) | 321 |
| BssMI | GATC | 6 cut(s) | 216, 358, 475, 647, 784, 976 |
| Bst2UI | CCWGG | 3 cut(s) | 201, 990, 1121 |
| Bst4CI | ACNGT | 1 cut(s) | 47 |
| Bst6I | CTCTTC | 1 cut(s) | 904 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 470 |
| BstAUI | TGTACA | 1 cut(s) | 1165 |
| BstBAI | YACGTR | 1 cut(s) | 370 |
| BstBI | TTCGAA | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 2 cut(s) | 484, 1110 |
| BstDEI | CTNAG | 3 cut(s) | 423, 799, 1090 |
| BstF5I | GGATG | 2 cut(s) | 266, 452 |
| BstKTI | GATC | 6 cut(s) | 219, 361, 478, 650, 787, 979 |
| BstMAI | GTCTC | 1 cut(s) | 549 |
| BstMBI | GATC | 6 cut(s) | 216, 358, 475, 647, 784, 976 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 87, 205, 470, 479 |
| BstNI | CCWGG | 3 cut(s) | 201, 990, 1121 |
| BstNSI | RCATGY | 2 cut(s) | 719, 1112 |
| BstSCI | CCNGG | 4 cut(s) | 159, 199, 988, 1119 |
| BstSFI | CTRYAG | 1 cut(s) | 206 |
| BstV2I | GAAGAC | 3 cut(s) | 99, 337, 704 |
| BstX2I | RGATCY | 1 cut(s) | 475 |
| BstYI | RGATCY | 1 cut(s) | 475 |
| BsuRI | GGCC | 2 cut(s) | 1119, 1182 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsCI | GGATG | 2 cut(s) | 266, 452 |
| BtsI | GCAGTG | 1 cut(s) | 1171 |
| BtsIMutI | CAGTG | 1 cut(s) | 1171 |
| Cac8I | GCNNGC | 2 cut(s) | 484, 1110 |
| Cfr13I | GGNCC | 4 cut(s) | 315, 325, 937, 946 |
| CseI | GACGC | 1 cut(s) | 252 |
| Csp6I | GTAC | 2 cut(s) | 1075, 1166 |
| CviAII | CATG | 4 cut(s) | 487, 716, 1109, 1144 |
| CviQI | GTAC | 2 cut(s) | 1075, 1166 |
| DdeI | CTNAG | 3 cut(s) | 423, 799, 1090 |
| DpnI | GATC | 6 cut(s) | 218, 360, 477, 649, 786, 978 |
| DpnII | GATC | 6 cut(s) | 216, 358, 475, 647, 784, 976 |
| EaeI | YGGCCR | 1 cut(s) | 1117 |
| Eam1104I | CTCTTC | 1 cut(s) | 904 |
| EarI | CTCTTC | 1 cut(s) | 904 |
| Eco47I | GGWCC | 4 cut(s) | 315, 325, 937, 946 |
| Eco57I | CTGAAG | 2 cut(s) | 67, 1052 |
| Eco72I | CACGTG | 1 cut(s) | 370 |
| EcoRII | CCWGG | 3 cut(s) | 199, 988, 1119 |
| FaeI | CATG | 4 cut(s) | 490, 719, 1112, 1147 |
| FaqI | GGGAC | 2 cut(s) | 176, 349 |
| FatI | CATG | 4 cut(s) | 486, 715, 1108, 1143 |
| FauNDI | CATATG | 1 cut(s) | 942 |
| Fnu4HI | GCNGC | 2 cut(s) | 1177, 1180 |
| FokI | GGATG | 2 cut(s) | 253, 459 |
| Fsp4HI | GCNGC | 2 cut(s) | 1177, 1180 |
| FspBI | CTAG | 4 cut(s) | 408, 479, 906, 1014 |
| GluI | GCNGC | 2 cut(s) | 1177, 1180 |
| HaeIII | GGCC | 2 cut(s) | 1119, 1182 |
| HapII | CCGG | 1 cut(s) | 160 |
| HgaI | GACGC | 1 cut(s) | 252 |
| Hin1II | CATG | 4 cut(s) | 490, 719, 1112, 1147 |
| HindIII | AAGCTT | 1 cut(s) | 739 |
| HinfI | GANTC | 3 cut(s) | 38, 603, 1085 |
| HpaII | CCGG | 1 cut(s) | 160 |
| HphI | GGTGA | 1 cut(s) | 451 |
| Hpy166II | GTNNAC | 3 cut(s) | 721, 937, 1168 |
| Hpy188I | TCNGA | 4 cut(s) | 86, 325, 829, 1156 |
| Hpy188III | TCNNGA | 6 cut(s) | 76, 228, 270, 687, 906, 926 |
| Hpy8I | GTNNAC | 3 cut(s) | 721, 937, 1168 |
| Hpy99I | CGWCG | 2 cut(s) | 71, 170 |
| HpyAV | CCTTC | 5 cut(s) | 436, 740, 1027, 1130, 1193 |
| HpyCH4III | ACNGT | 1 cut(s) | 47 |
| HpyCH4IV | ACGT | 3 cut(s) | 69, 155, 369 |
| HpyCH4V | TGCA | 8 cut(s) | 208, 464, 473, 710, 817, 959, 1057, 1250 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 87, 205, 470, 479 |
| HpyF3I | CTNAG | 3 cut(s) | 423, 799, 1090 |
| HpySE526I | ACGT | 3 cut(s) | 69, 155, 369 |
| Hsp92II | CATG | 4 cut(s) | 490, 719, 1112, 1147 |
| Kzo9I | GATC | 6 cut(s) | 216, 358, 475, 647, 784, 976 |
| LweI | GCATC | 2 cut(s) | 946, 1044 |
| MaeI | CTAG | 4 cut(s) | 408, 479, 906, 1014 |
| MaeII | ACGT | 3 cut(s) | 69, 155, 369 |
| MaeIII | GTNAC | 2 cut(s) | 1045, 1139 |
| MalI | GATC | 6 cut(s) | 218, 360, 477, 649, 786, 978 |
| MboI | GATC | 6 cut(s) | 216, 358, 475, 647, 784, 976 |
| MboII | GAAGA | 6 cut(s) | 104, 200, 337, 709, 921, 1203 |
| MflI | RGATCY | 1 cut(s) | 475 |
| MlsI | TGGCCA | 1 cut(s) | 1119 |
| MluCI | AATT | 7 cut(s) | 537, 593, 628, 724, 879, 950, 1227 |
| MluNI | TGGCCA | 1 cut(s) | 1119 |
| MlyI | GAGTC | 1 cut(s) | 1094 |
| MmeI | TCCRAC | 1 cut(s) | 66 |
| Mox20I | TGGCCA | 1 cut(s) | 1119 |
| MscI | TGGCCA | 1 cut(s) | 1119 |
| MseI | TTAA | 3 cut(s) | 543, 563, 882 |
| MslI | CAYNNNNRTG | 1 cut(s) | 271 |
| Msp20I | TGGCCA | 1 cut(s) | 1119 |
| MspI | CCGG | 1 cut(s) | 160 |
| MspR9I | CCNGG | 4 cut(s) | 161, 201, 990, 1121 |
| MvaI | CCWGG | 3 cut(s) | 201, 990, 1121 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 87, 205, 470, 479 |
| NciI | CCSGG | 1 cut(s) | 161 |
| NdeI | CATATG | 1 cut(s) | 942 |
| NdeII | GATC | 6 cut(s) | 216, 358, 475, 647, 784, 976 |
| NlaIII | CATG | 4 cut(s) | 490, 719, 1112, 1147 |
| NlaIV | GGNNCC | 2 cut(s) | 28, 278 |
| NspI | RCATGY | 2 cut(s) | 719, 1112 |
| NspV | TTCGAA | 1 cut(s) | 251 |
| PaeI | GCATGC | 1 cut(s) | 1112 |
| PciI | ACATGT | 1 cut(s) | 715 |
| PfeI | GAWTC | 2 cut(s) | 38, 603 |
| PfoI | TCCNGGA | 2 cut(s) | 159, 988 |
| PkrI | GCNGC | 2 cut(s) | 1178, 1181 |
| PleI | GAGTC | 1 cut(s) | 1093 |
| PmaCI | CACGTG | 1 cut(s) | 370 |
| PmlI | CACGTG | 1 cut(s) | 370 |
| PpsI | GAGTC | 1 cut(s) | 1093 |
| Ppu21I | YACGTR | 1 cut(s) | 370 |
| PscI | ACATGT | 1 cut(s) | 715 |
| PsiI | TTATAA | 1 cut(s) | 1007 |
| Psp6I | CCWGG | 3 cut(s) | 199, 988, 1119 |
| PspCI | CACGTG | 1 cut(s) | 370 |
| PspGI | CCWGG | 3 cut(s) | 199, 988, 1119 |
| PspN4I | GGNNCC | 2 cut(s) | 28, 278 |
| PspPI | GGNCC | 4 cut(s) | 315, 325, 937, 946 |
| PstI | CTGCAG | 1 cut(s) | 210 |
| PsuI | RGATCY | 1 cut(s) | 475 |
| RsaI | GTAC | 2 cut(s) | 1076, 1167 |
| RsaNI | GTAC | 2 cut(s) | 1075, 1166 |
| RseI | CAYNNNNRTG | 1 cut(s) | 271 |
| SaqAI | TTAA | 3 cut(s) | 543, 563, 882 |
| SatI | GCNGC | 2 cut(s) | 1177, 1180 |
| Sau3AI | GATC | 6 cut(s) | 216, 358, 475, 647, 784, 976 |
| Sau96I | GGNCC | 4 cut(s) | 315, 325, 937, 946 |
| SchI | GAGTC | 1 cut(s) | 1094 |
| ScrFI | CCNGG | 4 cut(s) | 161, 201, 990, 1121 |
| SfaNI | GCATC | 2 cut(s) | 946, 1044 |
| SfcI | CTRYAG | 1 cut(s) | 206 |
| SfuI | TTCGAA | 1 cut(s) | 251 |
| SinI | GGWCC | 4 cut(s) | 315, 325, 937, 946 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 271 |
| SmlI | CTYRAG | 4 cut(s) | 21, 76, 176, 612 |
| SmoI | CTYRAG | 4 cut(s) | 21, 76, 176, 612 |
| SphI | GCATGC | 1 cut(s) | 1112 |
| Sse9I | AATT | 7 cut(s) | 537, 593, 628, 724, 879, 950, 1227 |
| SsiI | CCGC | 2 cut(s) | 1176, 1179 |
| SspI | AATATT | 1 cut(s) | 1151 |
| SspMI | CTAG | 4 cut(s) | 408, 479, 906, 1014 |
| StyD4I | CCNGG | 4 cut(s) | 159, 199, 988, 1119 |
| TaaI | ACNGT | 1 cut(s) | 47 |
| TaiI | ACGT | 3 cut(s) | 72, 158, 372 |
| TaqI | TCGA | 4 cut(s) | 251, 357, 618, 787 |
| TasI | AATT | 7 cut(s) | 537, 593, 628, 724, 879, 950, 1227 |
| TatI | WGTACW | 2 cut(s) | 1074, 1165 |
| TauI | GCSGC | 2 cut(s) | 1179, 1182 |
| TfiI | GAWTC | 2 cut(s) | 38, 603 |
| Tru1I | TTAA | 3 cut(s) | 543, 563, 882 |
| Tru9I | TTAA | 3 cut(s) | 543, 563, 882 |
| TscAI | CASTG | 1 cut(s) | 1178 |
| TspDTI | ATGAA | 3 cut(s) | 186, 748, 986 |
| TspGWI | ACGGA | 1 cut(s) | 351 |
| TspRI | CASTG | 1 cut(s) | 1178 |
| VpaK11BI | GGWCC | 4 cut(s) | 315, 325, 937, 946 |
| XbaI | TCTAGA | 1 cut(s) | 905 |
| XceI | RCATGY | 2 cut(s) | 719, 1112 |
| XspI | CTAG | 4 cut(s) | 408, 479, 906, 1014 |