POT family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 201 | 1.1e-51 | TIR domain |
| TIR_2 | PF13676 | 24 - 121 | 3.1e-17 | TIR domain |
| NB-ARC | PF00931 | 205 - 374 | 5.1e-20 | NB-ARC domain |
| AAA_22 | PF13401 | 219 - 319 | 2.9e-07 | AAA domain |
| WHD_ROQ1 | PF23282 | 443 - 513 | 3.7e-18 | Disease resistance protein Roq1-like, winged-helix domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 276 |
| AccI | GTMKAC | 2 cut(s) | 618, 664 |
| AccII | CGCG | 1 cut(s) | 263 |
| AciI | CCGC | 1 cut(s) | 1176 |
| AclWI | GGATC | 4 cut(s) | 353, 638, 1131, 1925 |
| AcoI | YGGCCR | 1 cut(s) | 1117 |
| AcsI | RAATTY | 2 cut(s) | 819, 1808 |
| AcuI | CTGAAG | 2 cut(s) | 227, 1176 |
| AfaI | GTAC | 6 cut(s) | 515, 963, 1167, 1249, 1612, 1749 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 313, 372, 692, 1136 |
| AflII | CTTAAG | 1 cut(s) | 1099 |
| AflIII | ACRYGT | 3 cut(s) | 69, 261, 1744 |
| AgeI | ACCGGT | 1 cut(s) | 340 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1483 |
| AjiI | CACGTC | 2 cut(s) | 70, 1498 |
| AjnI | CCWGG | 4 cut(s) | 685, 988, 1119, 1546 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1235, 1267 |
| Alw21I | GWGCWC | 1 cut(s) | 1098 |
| Alw26I | GTCTC | 2 cut(s) | 156, 1879 |
| AlwI | GGATC | 4 cut(s) | 353, 638, 1131, 1925 |
| Ama87I | CYCGRG | 1 cut(s) | 612 |
| AoxI | GGCC | 2 cut(s) | 315, 1117 |
| ApeKI | GCWGC | 2 cut(s) | 682, 753 |
| ApoI | RAATTY | 2 cut(s) | 819, 1808 |
| AsiGI | ACCGGT | 1 cut(s) | 340 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 607, 1269, 1343, 1524, 1699 |
| AspLEI | GCGC | 2 cut(s) | 143, 1572 |
| AspS9I | GGNCC | 5 cut(s) | 315, 325, 937, 946, 1067 |
| AsuHPI | GGTGA | 3 cut(s) | 101, 1292, 1474 |
| AsuII | TTCGAA | 2 cut(s) | 251, 1587 |
| AvaI | CYCGRG | 1 cut(s) | 612 |
| AvaII | GGWCC | 4 cut(s) | 325, 937, 946, 1067 |
| BalI | TGGCCA | 1 cut(s) | 1119 |
| BanI | GGYRCC | 1 cut(s) | 276 |
| BanII | GRGCYC | 1 cut(s) | 1098 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1149, 1181 |
| BbsI | GAAGAC | 4 cut(s) | 99, 337, 704, 1186 |
| Bbv12I | GWGCWC | 1 cut(s) | 1098 |
| BbvI | GCAGC | 2 cut(s) | 669, 765 |
| BccI | CCATC | 7 cut(s) | 267, 433, 441, 653, 1400, 1785, 1928 |
| BceAI | ACGGC | 1 cut(s) | 811 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 386, 420 |
| BciT130I | CCWGG | 4 cut(s) | 687, 990, 1121, 1548 |
| BcoDI | GTCTC | 2 cut(s) | 156, 1879 |
| BfaI | CTAG | 3 cut(s) | 479, 1014, 1403 |
| BfoI | RGCGCY | 1 cut(s) | 1573 |
| BfrI | CTTAAG | 1 cut(s) | 1099 |
| BglII | AGATCT | 1 cut(s) | 475 |
| BisI | GCNGC | 2 cut(s) | 683, 754 |
| BlsI | GCNGC | 2 cut(s) | 684, 755 |
| BmcAI | AGTACT | 1 cut(s) | 963 |
| Bme1390I | CCNGG | 4 cut(s) | 687, 990, 1121, 1548 |
| Bme18I | GGWCC | 4 cut(s) | 325, 937, 946, 1067 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1483 |
| BmeT110I | CYCGRG | 1 cut(s) | 612 |
| BmgBI | CACGTC | 2 cut(s) | 70, 1498 |
| BmgT120I | GGNCC | 5 cut(s) | 315, 325, 937, 946, 1067 |
| BmiI | GGNNCC | 3 cut(s) | 278, 1227, 1696 |
| BmrFI | CCNGG | 4 cut(s) | 687, 990, 1121, 1548 |
| BmsI | GCATC | 2 cut(s) | 946, 1704 |
| BpiI | GAAGAC | 4 cut(s) | 99, 337, 704, 1186 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 36 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1230 |
| Bpu14I | TTCGAA | 2 cut(s) | 251, 1587 |
| BpuEI | CTTGAG | 5 cut(s) | 6, 97, 161, 598, 1903 |
| BsaBI | GATNNNNATC | 1 cut(s) | 357 |
| BsaJI | CCNNGG | 2 cut(s) | 396, 1547 |
| BsaWI | WCCGGW | 2 cut(s) | 340, 414 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 313, 372, 692, 1136 |
| Bse118I | RCCGGY | 1 cut(s) | 340 |
| Bse1I | ACTGG | 2 cut(s) | 600, 1758 |
| Bse3DI | GCAATG | 2 cut(s) | 390, 705 |
| Bse8I | GATNNNNATC | 1 cut(s) | 357 |
| BseBI | CCWGG | 4 cut(s) | 687, 990, 1121, 1548 |
| BseDI | CCNNGG | 2 cut(s) | 396, 1547 |
| BseGI | GGATG | 8 cut(s) | 266, 787, 1126, 1330, 1384, 1415, 1719, 1766 |
| BseJI | GATNNNNATC | 1 cut(s) | 357 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 313, 372, 692, 1136 |
| BseMI | GCAATG | 2 cut(s) | 390, 705 |
| BseMII | CTCAG | 2 cut(s) | 956, 1459 |
| BseNI | ACTGG | 2 cut(s) | 600, 1758 |
| BseXI | GCAGC | 2 cut(s) | 669, 765 |
| BseYI | CCCAGC | 2 cut(s) | 482, 1636 |
| Bsh1236I | CGCG | 1 cut(s) | 263 |
| BshFI | GGCC | 2 cut(s) | 317, 1119 |
| BshNI | GGYRCC | 1 cut(s) | 276 |
| BshTI | ACCGGT | 1 cut(s) | 340 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1098 |
| BsiHKCI | CYCGRG | 1 cut(s) | 612 |
| BsiSI | CCGG | 2 cut(s) | 341, 415 |
| BslFI | GGGAC | 5 cut(s) | 211, 349, 1490, 1527, 1650 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 313, 372, 692, 1136 |
| BsmAI | GTCTC | 2 cut(s) | 156, 1879 |
| BsmBI | CGTCTC | 1 cut(s) | 156 |
| BsmFI | GGGAC | 5 cut(s) | 211, 349, 1490, 1527, 1650 |
| BsmI | GAATGC | 1 cut(s) | 1434 |
| BsnI | GGCC | 2 cut(s) | 317, 1119 |
| BsoBI | CYCGRG | 1 cut(s) | 612 |
| Bsp119I | TTCGAA | 2 cut(s) | 251, 1587 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1098 |
| Bsp143I | GATC | 7 cut(s) | 297, 358, 475, 643, 976, 1123, 1930 |
| BspACI | CCGC | 1 cut(s) | 1176 |
| BspANI | GGCC | 2 cut(s) | 317, 1119 |
| BspCNI | CTCAG | 2 cut(s) | 957, 1458 |
| BspFNI | CGCG | 1 cut(s) | 263 |
| BspLI | GGNNCC | 3 cut(s) | 278, 1227, 1696 |
| BspPI | GGATC | 4 cut(s) | 353, 638, 1131, 1925 |
| BspQI | GCTCTTC | 1 cut(s) | 886 |
| BspT104I | TTCGAA | 2 cut(s) | 251, 1587 |
| BspT107I | GGYRCC | 1 cut(s) | 276 |
| BspTI | CTTAAG | 1 cut(s) | 1099 |
| BsrDI | GCAATG | 2 cut(s) | 390, 705 |
| BsrFI | RCCGGY | 1 cut(s) | 340 |
| BsrI | ACTGG | 2 cut(s) | 600, 1758 |
| BssAI | RCCGGY | 1 cut(s) | 340 |
| BssECI | CCNNGG | 2 cut(s) | 396, 1547 |
| BssMI | GATC | 7 cut(s) | 297, 358, 475, 643, 976, 1123, 1930 |
| BssNAI | GTATAC | 1 cut(s) | 665 |
| Bst1107I | GTATAC | 1 cut(s) | 665 |
| Bst2UI | CCWGG | 4 cut(s) | 687, 990, 1121, 1548 |
| Bst4CI | ACNGT | 2 cut(s) | 1054, 1664 |
| Bst6I | CTCTTC | 2 cut(s) | 886, 904 |
| BstAFI | CTTAAG | 1 cut(s) | 1099 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 470, 1651 |
| BstBI | TTCGAA | 2 cut(s) | 251, 1587 |
| BstC8I | GCNNGC | 7 cut(s) | 213, 319, 1106, 1110, 1617, 1643, 1802 |
| BstDEI | CTNAG | 7 cut(s) | 563, 799, 965, 1230, 1445, 1575, 1739 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 690 |
| BstF5I | GGATG | 8 cut(s) | 266, 787, 1126, 1330, 1384, 1415, 1719, 1766 |
| BstFNI | CGCG | 1 cut(s) | 263 |
| BstH2I | RGCGCY | 1 cut(s) | 1573 |
| BstHHI | GCGC | 2 cut(s) | 143, 1572 |
| BstKTI | GATC | 7 cut(s) | 300, 361, 478, 646, 979, 1126, 1933 |
| BstMAI | GTCTC | 2 cut(s) | 156, 1879 |
| BstMBI | GATC | 7 cut(s) | 297, 358, 475, 643, 976, 1123, 1930 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 470, 479, 1642, 1651 |
| BstNI | CCWGG | 4 cut(s) | 687, 990, 1121, 1548 |
| BstNSI | RCATGY | 4 cut(s) | 1112, 1238, 1645, 1748 |
| BstSCI | CCNGG | 4 cut(s) | 685, 988, 1119, 1546 |
| BstUI | CGCG | 1 cut(s) | 263 |
| BstV1I | GCAGC | 2 cut(s) | 669, 765 |
| BstV2I | GAAGAC | 4 cut(s) | 99, 337, 704, 1186 |
| BstX2I | RGATCY | 3 cut(s) | 475, 643, 1930 |
| BstYI | RGATCY | 3 cut(s) | 475, 643, 1930 |
| BstZ17I | GTATAC | 1 cut(s) | 665 |
| BsuRI | GGCC | 2 cut(s) | 317, 1119 |
| BtrI | CACGTC | 2 cut(s) | 70, 1498 |
| BtsCI | GGATG | 8 cut(s) | 266, 787, 1126, 1330, 1384, 1415, 1719, 1766 |
| Cac8I | GCNNGC | 7 cut(s) | 213, 319, 1106, 1110, 1617, 1643, 1802 |
| CfoI | GCGC | 2 cut(s) | 143, 1572 |
| Cfr10I | RCCGGY | 1 cut(s) | 340 |
| Cfr13I | GGNCC | 5 cut(s) | 315, 325, 937, 946, 1067 |
| CseI | GACGC | 1 cut(s) | 252 |
| Csp6I | GTAC | 6 cut(s) | 514, 962, 1166, 1248, 1611, 1748 |
| CspAI | ACCGGT | 1 cut(s) | 340 |
| CviQI | GTAC | 6 cut(s) | 514, 962, 1166, 1248, 1611, 1748 |
| DdeI | CTNAG | 7 cut(s) | 563, 799, 965, 1230, 1445, 1575, 1739 |
| DpnI | GATC | 7 cut(s) | 299, 360, 477, 645, 978, 1125, 1932 |
| DpnII | GATC | 7 cut(s) | 297, 358, 475, 643, 976, 1123, 1930 |
| DraI | TTTAAA | 1 cut(s) | 837 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1483 |
| EaeI | YGGCCR | 1 cut(s) | 1117 |
| Eam1104I | CTCTTC | 2 cut(s) | 886, 904 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1483 |
| EarI | CTCTTC | 2 cut(s) | 886, 904 |
| Ecl136II | GAGCTC | 1 cut(s) | 1096 |
| Eco24I | GRGCYC | 1 cut(s) | 1098 |
| Eco32I | GATATC | 2 cut(s) | 149, 193 |
| Eco47I | GGWCC | 4 cut(s) | 325, 937, 946, 1067 |
| Eco53kI | GAGCTC | 1 cut(s) | 1096 |
| Eco57I | CTGAAG | 2 cut(s) | 227, 1176 |
| Eco88I | CYCGRG | 1 cut(s) | 612 |
| EcoICRI | GAGCTC | 1 cut(s) | 1096 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 690 |
| EcoRII | CCWGG | 4 cut(s) | 685, 988, 1119, 1546 |
| EcoRV | GATATC | 2 cut(s) | 149, 193 |
| EcoT22I | ATGCAT | 2 cut(s) | 1494, 1647 |
| EcoT38I | GRGCYC | 1 cut(s) | 1098 |
| Esp3I | CGTCTC | 1 cut(s) | 156 |
| FaqI | GGGAC | 5 cut(s) | 211, 349, 1490, 1527, 1650 |
| FauNDI | CATATG | 2 cut(s) | 942, 1540 |
| FblI | GTMKAC | 2 cut(s) | 618, 664 |
| Fnu4HI | GCNGC | 2 cut(s) | 683, 754 |
| FokI | GGATG | 8 cut(s) | 253, 774, 1113, 1337, 1391, 1422, 1726, 1773 |
| FriOI | GRGCYC | 1 cut(s) | 1098 |
| Fsp4HI | GCNGC | 2 cut(s) | 683, 754 |
| FspBI | CTAG | 3 cut(s) | 479, 1014, 1403 |
| GlaI | GCGC | 2 cut(s) | 142, 1571 |
| GluI | GCNGC | 2 cut(s) | 683, 754 |
| GsaI | CCCAGC | 2 cut(s) | 486, 1640 |
| HaeII | RGCGCY | 1 cut(s) | 1573 |
| HaeIII | GGCC | 2 cut(s) | 317, 1119 |
| HapII | CCGG | 2 cut(s) | 341, 415 |
| HgaI | GACGC | 1 cut(s) | 252 |
| HhaI | GCGC | 2 cut(s) | 143, 1572 |
| Hin6I | GCGC | 2 cut(s) | 141, 1570 |
| HinP1I | GCGC | 2 cut(s) | 141, 1570 |
| HincII | GTYRAC | 2 cut(s) | 304, 619 |
| HindII | GTYRAC | 2 cut(s) | 304, 619 |
| HindIII | AAGCTT | 2 cut(s) | 504, 901 |
| HpaII | CCGG | 2 cut(s) | 341, 415 |
| HphI | GGTGA | 3 cut(s) | 101, 1292, 1474 |
| Hpy166II | GTNNAC | 6 cut(s) | 111, 304, 619, 665, 721, 937 |
| Hpy188I | TCNGA | 7 cut(s) | 37, 325, 773, 1156, 1397, 1448, 1779 |
| Hpy8I | GTNNAC | 6 cut(s) | 111, 304, 619, 665, 721, 937 |
| Hpy99I | CGWCG | 3 cut(s) | 54, 71, 170 |
| HpyAV | CCTTC | 7 cut(s) | 448, 481, 740, 1037, 1130, 1358, 1619 |
| HpyCH4III | ACNGT | 2 cut(s) | 1054, 1664 |
| HpyCH4IV | ACGT | 4 cut(s) | 69, 107, 1497, 1908 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 470, 479, 1642, 1651 |
| HpyF3I | CTNAG | 7 cut(s) | 563, 799, 965, 1230, 1445, 1575, 1739 |
| HpySE526I | ACGT | 4 cut(s) | 69, 107, 1497, 1908 |
| HspAI | GCGC | 2 cut(s) | 141, 1570 |
| Kzo9I | GATC | 7 cut(s) | 297, 358, 475, 643, 976, 1123, 1930 |
| LguI | GCTCTTC | 1 cut(s) | 886 |
| LmnI | GCTCC | 2 cut(s) | 26, 1093 |
| Lsp1109I | GCAGC | 2 cut(s) | 669, 765 |
| LweI | GCATC | 2 cut(s) | 946, 1704 |
| MaeI | CTAG | 3 cut(s) | 479, 1014, 1403 |
| MaeII | ACGT | 4 cut(s) | 69, 107, 1497, 1908 |
| MaeIII | GTNAC | 3 cut(s) | 636, 1462, 1505 |
| MalI | GATC | 7 cut(s) | 299, 360, 477, 645, 978, 1125, 1932 |
| MboI | GATC | 7 cut(s) | 297, 358, 475, 643, 976, 1123, 1930 |
| MfeI | CAATTG | 2 cut(s) | 1467, 1620 |
| MflI | RGATCY | 3 cut(s) | 475, 643, 1930 |
| MhlI | GDGCHC | 1 cut(s) | 1098 |
| MlsI | TGGCCA | 1 cut(s) | 1119 |
| MluI | ACGCGT | 1 cut(s) | 261 |
| MluNI | TGGCCA | 1 cut(s) | 1119 |
| MlyI | GAGTC | 3 cut(s) | 527, 624, 1307 |
| MmeI | TCCRAC | 4 cut(s) | 66, 580, 1045, 1802 |
| Mox20I | TGGCCA | 1 cut(s) | 1119 |
| Mph1103I | ATGCAT | 2 cut(s) | 1494, 1647 |
| MroXI | GAANNNNTTC | 5 cut(s) | 607, 1269, 1343, 1524, 1699 |
| MscI | TGGCCA | 1 cut(s) | 1119 |
| MseI | TTAA | 6 cut(s) | 282, 543, 836, 882, 1100, 1787 |
| MslI | CAYNNNNRTG | 2 cut(s) | 271, 657 |
| Msp20I | TGGCCA | 1 cut(s) | 1119 |
| MspA1I | CMGCKG | 1 cut(s) | 1176 |
| MspCI | CTTAAG | 1 cut(s) | 1099 |
| MspI | CCGG | 2 cut(s) | 341, 415 |
| MspR9I | CCNGG | 4 cut(s) | 687, 990, 1121, 1548 |
| MunI | CAATTG | 2 cut(s) | 1467, 1620 |
| Mva1269I | GAATGC | 1 cut(s) | 1434 |
| MvaI | CCWGG | 4 cut(s) | 687, 990, 1121, 1548 |
| MvnI | CGCG | 1 cut(s) | 263 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 470, 479, 1642, 1651 |
| NdeI | CATATG | 2 cut(s) | 942, 1540 |
| NdeII | GATC | 7 cut(s) | 297, 358, 475, 643, 976, 1123, 1930 |
| NlaIV | GGNNCC | 3 cut(s) | 278, 1227, 1696 |
| NmeAIII | GCCGAG | 2 cut(s) | 421, 1556 |
| NmuCI | GTSAC | 2 cut(s) | 1462, 1505 |
| NsiI | ATGCAT | 2 cut(s) | 1494, 1647 |
| NspI | RCATGY | 4 cut(s) | 1112, 1238, 1645, 1748 |
| NspV | TTCGAA | 2 cut(s) | 251, 1587 |
| PaeI | GCATGC | 2 cut(s) | 1112, 1645 |
| PaeR7I | CTCGAG | 1 cut(s) | 612 |
| PciI | ACATGT | 1 cut(s) | 1744 |
| PciSI | GCTCTTC | 1 cut(s) | 886 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 157, 291 |
| PctI | GAATGC | 1 cut(s) | 1434 |
| PdmI | GAANNNNTTC | 5 cut(s) | 607, 1269, 1343, 1524, 1699 |
| PfoI | TCCNGGA | 1 cut(s) | 988 |
| PinAI | ACCGGT | 1 cut(s) | 340 |
| PkrI | GCNGC | 2 cut(s) | 684, 755 |
| PleI | GAGTC | 3 cut(s) | 526, 623, 1307 |
| PpsI | GAGTC | 3 cut(s) | 526, 623, 1307 |
| PscI | ACATGT | 1 cut(s) | 1744 |
| Psp124BI | GAGCTC | 1 cut(s) | 1098 |
| Psp6I | CCWGG | 4 cut(s) | 685, 988, 1119, 1546 |
| PspFI | CCCAGC | 2 cut(s) | 482, 1636 |
| PspGI | CCWGG | 4 cut(s) | 685, 988, 1119, 1546 |
| PspN4I | GGNNCC | 3 cut(s) | 278, 1227, 1696 |
| PspPI | GGNCC | 5 cut(s) | 315, 325, 937, 946, 1067 |
| PsuI | RGATCY | 3 cut(s) | 475, 643, 1930 |
| RsaI | GTAC | 6 cut(s) | 515, 963, 1167, 1249, 1612, 1749 |
| RsaNI | GTAC | 6 cut(s) | 514, 962, 1166, 1248, 1611, 1748 |
| RseI | CAYNNNNRTG | 2 cut(s) | 271, 657 |
| SacI | GAGCTC | 1 cut(s) | 1098 |
| SalI | GTCGAC | 1 cut(s) | 617 |
| SapI | GCTCTTC | 1 cut(s) | 886 |
| SaqAI | TTAA | 6 cut(s) | 282, 543, 836, 882, 1100, 1787 |
| SatI | GCNGC | 2 cut(s) | 683, 754 |
| Sau3AI | GATC | 7 cut(s) | 297, 358, 475, 643, 976, 1123, 1930 |
| Sau96I | GGNCC | 5 cut(s) | 315, 325, 937, 946, 1067 |
| ScaI | AGTACT | 1 cut(s) | 963 |
| SchI | GAGTC | 3 cut(s) | 527, 624, 1307 |
| ScrFI | CCNGG | 4 cut(s) | 687, 990, 1121, 1548 |
| SduI | GDGCHC | 1 cut(s) | 1098 |
| SfaNI | GCATC | 2 cut(s) | 946, 1704 |
| Sfr274I | CTCGAG | 1 cut(s) | 612 |
| SfuI | TTCGAA | 2 cut(s) | 251, 1587 |
| SinI | GGWCC | 4 cut(s) | 325, 937, 946, 1067 |
| SlaI | CTCGAG | 1 cut(s) | 612 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 271, 657 |
| SmlI | CTYRAG | 7 cut(s) | 21, 76, 176, 577, 612, 1099, 1882 |
| SmoI | CTYRAG | 7 cut(s) | 21, 76, 176, 577, 612, 1099, 1882 |
| SphI | GCATGC | 2 cut(s) | 1112, 1645 |
| SsiI | CCGC | 1 cut(s) | 1176 |
| SspI | AATATT | 1 cut(s) | 1151 |
| SspMI | CTAG | 3 cut(s) | 479, 1014, 1403 |
| SstI | GAGCTC | 1 cut(s) | 1098 |
| StyD4I | CCNGG | 4 cut(s) | 685, 988, 1119, 1546 |
| TaaI | ACNGT | 2 cut(s) | 1054, 1664 |
| TaiI | ACGT | 4 cut(s) | 72, 110, 1500, 1911 |
| TaqI | TCGA | 8 cut(s) | 160, 251, 294, 613, 618, 1080, 1587, 1806 |
| TatI | WGTACW | 2 cut(s) | 961, 1247 |
| Tru1I | TTAA | 6 cut(s) | 282, 543, 836, 882, 1100, 1787 |
| Tru9I | TTAA | 6 cut(s) | 282, 543, 836, 882, 1100, 1787 |
| TseFI | GTSAC | 2 cut(s) | 1462, 1505 |
| TseI | GCWGC | 2 cut(s) | 682, 753 |
| Tsp45I | GTSAC | 2 cut(s) | 1462, 1505 |
| TspDTI | ATGAA | 9 cut(s) | 186, 986, 1056, 1074, 1098, 1340, 1395, 1662, 1692 |
| TspGWI | ACGGA | 2 cut(s) | 351, 1773 |
| Vha464I | CTTAAG | 1 cut(s) | 1099 |
| VpaK11BI | GGWCC | 4 cut(s) | 325, 937, 946, 1067 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 690 |
| XapI | RAATTY | 2 cut(s) | 819, 1808 |
| XceI | RCATGY | 4 cut(s) | 1112, 1238, 1645, 1748 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1112 |
| XhoI | CTCGAG | 1 cut(s) | 612 |
| XmiI | GTMKAC | 2 cut(s) | 618, 664 |
| XmnI | GAANNNNTTC | 5 cut(s) | 607, 1269, 1343, 1524, 1699 |
| XspI | CTAG | 3 cut(s) | 479, 1014, 1403 |
| ZrmI | AGTACT | 1 cut(s) | 963 |
| Zsp2I | ATGCAT | 2 cut(s) | 1494, 1647 |