pycom07g04880

TMV resistance protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
4192137 .. 4194651
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04880.2

Sequence Viewer

Length: 2109 bp
ATGGACAAGTTGTATATGCATGACGTGATTCGTGACATGGGACGAGAAATTGTTCGTCGAGAATCATATGAGCCTAGGAATCGTAGTAGATTGTGGCGCTCTAAGGATTCCTTCGAAGTATTGAGAGAAAAGAATGGTACGCAAGCAATTGAAGGTTTTATGCTGGACATGCATGAACTGCTTACAAGCAATCCCATAAACTCAAACAAGAATGTCTTGGAAACCAATTCATTTGCAAGGATGCACAAACTGAAACTGCTCTGTCTTAGACATGTACAACTGGATGGATGTTATGCAGAACTTCCTATAGGGTTAAGATGGTTGTGCTGGCCCGAATTTCCTTTGGATTCAATTCCTGTTGATTTTTCTTTGGAGAAATTGGTATCTCTTGAAATGCAATATAGCAGCTTGAGACAAGTTTTCAAAGAAGCAAAATTTCTTCCATCATTGAAGATCCTTGACGTCAGCCATTCTCATGGCCTCACTGAAATCATGGACTTCTCACTTTGCCCCCGTCTAGAGGAATTGATCCTTGTAGGCTGCACAAGCTTGATTGTTGTTCATGAATCCATTGGAAACCTGGAGAGACTCGTGTACTTGAATACAAAGGATTGCAAGAATCTTAGGATGCTTCCGAAGAGCATGTGCATGCTTAAGTCACTTGAAACACTCATTTTATCTGGTTGCTCAAATCTTGATGAGTTTCCATTGGAGATGATGCAGAGGATGGAGTCTCTGAAAGTGCTTGAAATAGATGGAATTCCAATGAGTGGGTTATGGCCAGAAACATGTTCAAGTATCTTGAGTTATTTTCCATGCTCTTTGGTAAAGTTGAATCTCAGTGGGTGCAATCTTTCTGATGATGCCTTTCGTGGGGATTTAAGTAAGCTGTCCTCAATACAAAGACTATATTTAGATGAGAATCCAATTTGTACTCTGCCAGTTTTTATCAAAGGTTTGAGAAGGCTTAATCATCTATCTTTCCACAATTGTAAAGTGCTCGATTCTCTTCTGGGGTTGCCGAATGTACACAATGCGATGGATGGAATAGTGATGAATTTAAATGGATGCATATCATTAAAAAAAATAACATATCAATCTGAGTTCAAACAAAATGTCATGATGGGGGGCAACTGCAATCTAGTTGAGTGGGAGTACTGGTACAAGTTAGAGCCTATTGATAGAGTTGATGCGGAAATGATCAAACTTTTGAGCTTGTTCAACTTAAGATCCATGCCATCCATTAGAATGCGCCAACCATACGCAATTTCCCATCCAAATGAGGGTAGATGGAGTCCTGTTCAGGGACTCTATCAATTTGGTATATTTAGCACTTTTTTGGTTGGGAATGAGGTTCCAGGCTGGTTTAGCTATAAAAGCACCAAGTCTTCTCTATCTTTTATGGTCCCTTTACTCCCTACCACTCACAGAATCCGAGGCTTGAACATTTTTGCTACCTATGCAAACGAGGAGAATTCTAATAATCATGATTATAGTATAATTCGTCCAATAATGGCTAAAGTGAGTAACAAGAGCAAGGGTCTGAAGTGGATCTATTCCCCACTATTCTATGGAATTCCAGGAGAGGGTGAAGATATGATATGGTTGAGCCATTGGAGGATGGAGAGTGAAACAATATTACAATGTGGAGATCAAGTGGTTGTTTTGGTAATGGCCGGATATCCTGAGTGGTTTCGGGTAAAGGAGTTTGGTGTCGAGCTTGTGCAAGAGCACCAGCATAATATGATGATGAGTAACCAACACAACACCAAATCAGATCCTCATTATCCATTTGTCATCGGTGGAGATTTGTCCATGTACGAGCATAAACCAGGAATATACTTCCTTGGTTTCTCTAAAGAAAAAACTGAAAATATTGTTTTTGGTATACAGAGAATGTTTAATCGCCTCATCATGGACACTGATGAAGAAGACACAGGCAAAGAAGGCCACGAGGATGAACCTGATTACACAATTGCAAGGATGAGGGCTGCCAGCAACAACTGCAGCCTCGGAGGCTGGAAGGTGCTCCTCACAGCTGCCGGCTTATTTTTCACGTTTGCTCTTGTAGTTCGGTCCTCCATCTCTCCGAAAAAGAAGCGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

703

Amino Acids

80.74

Weight (kDa)

6.59

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 770
AccI GTMKAC 1 cut(s) 1888
AciI CCGC 1 cut(s) 1193
AclWI GGATC 5 cut(s) 448, 523, 1224, 1559, 1772
AcoI YGGCCR 2 cut(s) 779, 1674
AcsI RAATTY 6 cut(s) 335, 434, 759, 1057, 1474, 1575
AcuI CTGAAG 1 cut(s) 1565
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 8 cut(s) 139, 276, 596, 934, 1029, 1157, 1163, 1820
AfiI CCNNNNNNNGG 7 cut(s) 520, 770, 873, 1283, 1304, 1586, 1915
AflII CTTAAG 2 cut(s) 653, 1225
AflIII ACRYGT 2 cut(s) 271, 788
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 4 cut(s) 579, 1357, 1579, 1831
AluBI AGCT 7 cut(s) 408, 549, 889, 1215, 1371, 1720, 2039
AluI AGCT 7 cut(s) 408, 549, 889, 1215, 1371, 1720, 2039
Alw21I GWGCWC 3 cut(s) 1002, 1734, 2031
Alw26I GTCTC 3 cut(s) 406, 580, 738
AlwI GGATC 5 cut(s) 448, 523, 1224, 1559, 1772
AoxI GGCC 5 cut(s) 329, 478, 779, 1674, 1948
ApeKI GCWGC 5 cut(s) 405, 540, 1991, 2007, 2039
ApoI RAATTY 6 cut(s) 335, 434, 759, 1057, 1474, 1575
ArsI GACNNNNNNTTYG 2 cut(s) 1101, 1133
Asp700I GAANNNNTTC 1 cut(s) 51
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 2 cut(s) 99, 1254
AspS9I GGNCC 3 cut(s) 330, 1405, 2076
AsuHPI GGTGA 1 cut(s) 1601
AsuII TTCGAA 1 cut(s) 114
AvaII GGWCC 2 cut(s) 1405, 2076
AvrII CCTAGG 1 cut(s) 74
BalI TGGCCA 1 cut(s) 781
BauI CACGAG 2 cut(s) 590, 1952
BbsI GAAGAC 2 cut(s) 1380, 1938
Bbv12I GWGCWC 3 cut(s) 1002, 1734, 2031
BbvI GCAGC 5 cut(s) 417, 527, 1978, 2019, 2026
BciT130I CCWGG 4 cut(s) 581, 1359, 1581, 1833
BclI TGATCA 1 cut(s) 1200
BcoDI GTCTC 3 cut(s) 406, 580, 738
BfaI CTAG 3 cut(s) 75, 518, 1142
BfmI CTRYAG 2 cut(s) 306, 2005
BfoI RGCGCY 1 cut(s) 100
BfrI CTTAAG 2 cut(s) 653, 1225
BglI GCCNNNNNGGC 1 cut(s) 2016
BisI GCNGC 5 cut(s) 406, 541, 1992, 2008, 2040
BlnI CCTAGG 1 cut(s) 74
BlsI GCNGC 5 cut(s) 407, 542, 1993, 2009, 2041
BmcAI AGTACT 1 cut(s) 1157
Bme1390I CCNGG 4 cut(s) 581, 1359, 1581, 1833
Bme18I GGWCC 2 cut(s) 1405, 2076
BmgBI CACGTC 1 cut(s) 25
BmgT120I GGNCC 3 cut(s) 330, 1405, 2076
BmiI GGNNCC 2 cut(s) 1356, 1407
BmrFI CCNGG 4 cut(s) 581, 1359, 1581, 1833
BmsI GCATC 6 cut(s) 231, 618, 708, 853, 1058, 1180
BpiI GAAGAC 2 cut(s) 1380, 1938
BpmI CTGGAG 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 430, 823
BsaBI GATNNNNATC 2 cut(s) 921, 1072
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 74, 1435, 1846, 2011
BsaXI ACNNNNNCTCC 4 cut(s) 1145, 1175, 1641, 1671
Bsc4I CCNNNNNNNGG 7 cut(s) 520, 770, 873, 1283, 1304, 1586, 1915
Bse118I RCCGGY 1 cut(s) 2042
Bse1I ACTGG 3 cut(s) 285, 941, 1163
Bse8I GATNNNNATC 2 cut(s) 921, 1072
BseBI CCWGG 4 cut(s) 581, 1359, 1581, 1833
BseDI CCNNGG 4 cut(s) 74, 1435, 1846, 2011
BseJI GATNNNNATC 2 cut(s) 921, 1072
BseLI CCNNNNNNNGG 7 cut(s) 520, 770, 873, 1283, 1304, 1586, 1915
BseMII CTCAG 3 cut(s) 853, 1092, 1677
BseNI ACTGG 3 cut(s) 285, 941, 1163
BseRI GAGGAG 2 cut(s) 1484, 2021
BseXI GCAGC 5 cut(s) 417, 527, 1978, 2019, 2026
BsgI GTGCAG 1 cut(s) 526
BshFI GGCC 5 cut(s) 331, 480, 781, 1676, 1950
BsiHKAI GWGCWC 3 cut(s) 1002, 1734, 2031
BsiSI CCGG 2 cut(s) 1677, 2043
BslFI GGGAC 3 cut(s) 54, 1320, 1391
BslI CCNNNNNNNGG 7 cut(s) 520, 770, 873, 1283, 1304, 1586, 1915
BsmAI GTCTC 3 cut(s) 406, 580, 738
BsmFI GGGAC 3 cut(s) 54, 1320, 1391
BsmI GAATGC 1 cut(s) 1254
BsnI GGCC 5 cut(s) 331, 480, 781, 1676, 1950
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 3 cut(s) 1002, 1734, 2031
Bsp1407I TGTACA 2 cut(s) 274, 1027
Bsp143I GATC 7 cut(s) 453, 528, 1200, 1229, 1551, 1651, 1777
BspACI CCGC 1 cut(s) 1193
BspANI GGCC 5 cut(s) 331, 480, 781, 1676, 1950
BspCNI CTCAG 3 cut(s) 852, 1093, 1678
BspHI TCATGA 3 cut(s) 562, 1119, 1486
BspLI GGNNCC 2 cut(s) 1356, 1407
BspMAI CTGCAG 1 cut(s) 2009
BspPI GGATC 5 cut(s) 448, 523, 1224, 1559, 1772
BspQI GCTCTTC 1 cut(s) 632
BspT104I TTCGAA 1 cut(s) 114
BspTI CTTAAG 2 cut(s) 653, 1225
BsrFI RCCGGY 1 cut(s) 2042
BsrGI TGTACA 2 cut(s) 274, 1027
BsrI ACTGG 3 cut(s) 285, 941, 1163
BssAI RCCGGY 1 cut(s) 2042
BssECI CCNNGG 4 cut(s) 74, 1435, 1846, 2011
BssMI GATC 7 cut(s) 453, 528, 1200, 1229, 1551, 1651, 1777
BssNAI GTATAC 1 cut(s) 1889
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 2 cut(s) 590, 1952
BssT1I CCWWGG 2 cut(s) 74, 1846
Bst1107I GTATAC 1 cut(s) 1889
Bst2BI CACGAG 2 cut(s) 590, 1952
Bst2UI CCWGG 4 cut(s) 581, 1359, 1581, 1833
Bst4CI ACNGT 1 cut(s) 2106
Bst6I CTCTTC 2 cut(s) 632, 1014
BstACI GRCGYC 1 cut(s) 462
BstAFI CTTAAG 2 cut(s) 653, 1225
BstAPI GCANNNNNTGC 2 cut(s) 178, 2004
BstAUI TGTACA 2 cut(s) 274, 1027
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 5 cut(s) 144, 329, 650, 1996, 2044
BstDEI CTNAG 6 cut(s) 102, 266, 623, 839, 1101, 1686
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 1254
BstKTI GATC 7 cut(s) 456, 531, 1203, 1232, 1554, 1654, 1780
BstMAI GTCTC 3 cut(s) 406, 580, 738
BstMBI GATC 7 cut(s) 453, 528, 1200, 1229, 1551, 1651, 1777
BstMWI GCNNNNNNNGC 9 cut(s) 169, 178, 546, 1368, 1377, 1460, 1947, 2004, 2016
BstNI CCWGG 4 cut(s) 581, 1359, 1581, 1833
BstNSI RCATGY 5 cut(s) 172, 275, 646, 652, 792
BstSCI CCNGG 4 cut(s) 579, 1357, 1579, 1831
BstSFI CTRYAG 2 cut(s) 306, 2005
BstV1I GCAGC 5 cut(s) 417, 527, 1978, 2019, 2026
BstV2I GAAGAC 2 cut(s) 1380, 1938
BstX2I RGATCY 4 cut(s) 453, 1229, 1551, 1777
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 4 cut(s) 453, 1229, 1551, 1777
BstZ17I GTATAC 1 cut(s) 1889
BsuRI GGCC 5 cut(s) 331, 480, 781, 1676, 1950
BtgZI GCGATG 1 cut(s) 1052
BtrI CACGTC 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 483, 847, 1920
Cac8I GCNNGC 5 cut(s) 144, 329, 650, 1996, 2044
CciI TCATGA 3 cut(s) 562, 1119, 1486
CfoI GCGC 2 cut(s) 99, 1254
Cfr10I RCCGGY 1 cut(s) 2042
Cfr13I GGNCC 3 cut(s) 330, 1405, 2076
Csp6I GTAC 8 cut(s) 138, 275, 595, 933, 1028, 1156, 1162, 1819
CviQI GTAC 8 cut(s) 138, 275, 595, 933, 1028, 1156, 1162, 1819
DdeI CTNAG 6 cut(s) 102, 266, 623, 839, 1101, 1686
DpnI GATC 7 cut(s) 455, 530, 1202, 1231, 1553, 1653, 1779
DpnII GATC 7 cut(s) 453, 528, 1200, 1229, 1551, 1651, 1777
DraI TTTAAA 1 cut(s) 1062
EaeI YGGCCR 2 cut(s) 779, 1674
Eam1104I CTCTTC 2 cut(s) 632, 1014
EarI CTCTTC 2 cut(s) 632, 1014
Eco130I CCWWGG 2 cut(s) 74, 1846
Eco32I GATATC 1 cut(s) 1682
Eco47I GGWCC 2 cut(s) 1405, 2076
Eco57I CTGAAG 1 cut(s) 1565
EcoRI GAATTC 3 cut(s) 759, 1474, 1575
EcoRII CCWGG 4 cut(s) 579, 1357, 1579, 1831
EcoRV GATATC 1 cut(s) 1682
EcoT14I CCWWGG 2 cut(s) 74, 1846
EcoT22I ATGCAT 3 cut(s) 21, 174, 1073
ErhI CCWWGG 2 cut(s) 74, 1846
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 200, 232
FaqI GGGAC 3 cut(s) 54, 1320, 1391
FauNDI CATATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 1200
FblI GTMKAC 1 cut(s) 1888
Fnu4HI GCNGC 5 cut(s) 406, 541, 1992, 2008, 2040
Fsp4HI GCNGC 5 cut(s) 406, 541, 1992, 2008, 2040
FspBI CTAG 3 cut(s) 75, 518, 1142
GlaI GCGC 2 cut(s) 98, 1253
GluI GCNGC 5 cut(s) 406, 541, 1992, 2008, 2040
GsuI CTGGAG 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 5 cut(s) 331, 480, 781, 1676, 1950
HapII CCGG 2 cut(s) 1677, 2043
HhaI GCGC 2 cut(s) 99, 1254
Hin1I GRCGYC 1 cut(s) 462
Hin6I GCGC 2 cut(s) 97, 1252
HinP1I GCGC 2 cut(s) 97, 1252
HindIII AAGCTT 1 cut(s) 547
HpaII CCGG 2 cut(s) 1677, 2043
HphI GGTGA 1 cut(s) 1601
Hpy166II GTNNAC 3 cut(s) 595, 1030, 1889
Hpy188I TCNGA 9 cut(s) 636, 738, 859, 1102, 1436, 1545, 1777, 2015, 2091
Hpy8I GTNNAC 3 cut(s) 595, 1030, 1889
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 5 cut(s) 121, 146, 957, 1940, 2017
HpyCH4III ACNGT 1 cut(s) 2106
HpyCH4IV ACGT 3 cut(s) 24, 462, 2057
HpyF10VI GCNNNNNNNGC 9 cut(s) 169, 178, 546, 1368, 1377, 1460, 1947, 2004, 2016
HpyF3I CTNAG 6 cut(s) 102, 266, 623, 839, 1101, 1686
HpySE526I ACGT 3 cut(s) 24, 462, 2057
Hsp92I GRCGYC 1 cut(s) 462
HspAI GCGC 2 cut(s) 97, 1252
KroI GCCGGC 1 cut(s) 2042
KroNI GCCGGC 1 cut(s) 2044
Ksp22I TGATCA 1 cut(s) 1200
Kzo9I GATC 7 cut(s) 453, 528, 1200, 1229, 1551, 1651, 1777
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 1 cut(s) 2034
Lsp1109I GCAGC 5 cut(s) 417, 527, 1978, 2019, 2026
LweI GCATC 6 cut(s) 231, 618, 708, 853, 1058, 1180
MaeI CTAG 3 cut(s) 75, 518, 1142
MaeII ACGT 3 cut(s) 24, 462, 2057
MaeIII GTNAC 4 cut(s) 32, 657, 1526, 1754
MalI GATC 7 cut(s) 455, 530, 1202, 1231, 1553, 1653, 1779
MboI GATC 7 cut(s) 453, 528, 1200, 1229, 1551, 1651, 1777
MboII GAAGA 8 cut(s) 431, 463, 649, 1001, 1380, 1604, 1940, 1943
MfeI CAATTG 3 cut(s) 147, 988, 1974
MflI RGATCY 4 cut(s) 453, 1229, 1551, 1777
MhlI GDGCHC 3 cut(s) 1002, 1734, 2031
MlsI TGGCCA 1 cut(s) 781
MluNI TGGCCA 1 cut(s) 781
MlyI GAGTC 4 cut(s) 582, 740, 1302, 1303
Mox20I TGGCCA 1 cut(s) 781
Mph1103I ATGCAT 3 cut(s) 21, 174, 1073
MroNI GCCGGC 1 cut(s) 2042
MroXI GAANNNNTTC 1 cut(s) 51
MscI TGGCCA 1 cut(s) 781
MseI TTAA 8 cut(s) 314, 654, 881, 969, 1061, 1079, 1226, 1902
MslI CAYNNNNRTG 5 cut(s) 474, 647, 1247, 1278, 1956
Msp20I TGGCCA 1 cut(s) 781
MspA1I CMGCKG 1 cut(s) 2039
MspCI CTTAAG 2 cut(s) 653, 1225
MspI CCGG 2 cut(s) 1677, 2043
MspR9I CCNGG 4 cut(s) 581, 1359, 1581, 1833
MunI CAATTG 3 cut(s) 147, 988, 1974
Mva1269I GAATGC 1 cut(s) 1254
MvaI CCWGG 4 cut(s) 581, 1359, 1581, 1833
MwoI GCNNNNNNNGC 9 cut(s) 169, 178, 546, 1368, 1377, 1460, 1947, 2004, 2016
NaeI GCCGGC 1 cut(s) 2044
NdeI CATATG 1 cut(s) 67
NdeII GATC 7 cut(s) 453, 528, 1200, 1229, 1551, 1651, 1777
NgoMIV GCCGGC 1 cut(s) 2042
NlaIV GGNNCC 2 cut(s) 1356, 1407
NmuCI GTSAC 2 cut(s) 32, 657
NsiI ATGCAT 3 cut(s) 21, 174, 1073
NspI RCATGY 5 cut(s) 172, 275, 646, 652, 792
NspV TTCGAA 1 cut(s) 114
PaeI GCATGC 1 cut(s) 652
PagI TCATGA 3 cut(s) 562, 1119, 1486
PciI ACATGT 2 cut(s) 271, 788
PciSI GCTCTTC 1 cut(s) 632
PctI GAATGC 1 cut(s) 1254
PdiI GCCGGC 1 cut(s) 2044
PdmI GAANNNNTTC 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 770
PfoI TCCNGGA 1 cut(s) 1579
PkrI GCNGC 5 cut(s) 407, 542, 1993, 2009, 2041
PleI GAGTC 4 cut(s) 582, 739, 1302, 1302
PpsI GAGTC 4 cut(s) 582, 739, 1302, 1302
PscI ACATGT 2 cut(s) 271, 788
Psp6I CCWGG 4 cut(s) 579, 1357, 1579, 1831
PspGI CCWGG 4 cut(s) 579, 1357, 1579, 1831
PspN4I GGNNCC 2 cut(s) 1356, 1407
PspPI GGNCC 3 cut(s) 330, 1405, 2076
PstI CTGCAG 1 cut(s) 2009
PsuI RGATCY 4 cut(s) 453, 1229, 1551, 1777
PvuII CAGCTG 1 cut(s) 2039
RsaI GTAC 8 cut(s) 139, 276, 596, 934, 1029, 1157, 1163, 1820
RsaNI GTAC 8 cut(s) 138, 275, 595, 933, 1028, 1156, 1162, 1819
RseI CAYNNNNRTG 5 cut(s) 474, 647, 1247, 1278, 1956
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 8 cut(s) 314, 654, 881, 969, 1061, 1079, 1226, 1902
SatI GCNGC 5 cut(s) 406, 541, 1992, 2008, 2040
Sau3AI GATC 7 cut(s) 453, 528, 1200, 1229, 1551, 1651, 1777
Sau96I GGNCC 3 cut(s) 330, 1405, 2076
ScaI AGTACT 1 cut(s) 1157
SchI GAGTC 4 cut(s) 582, 740, 1302, 1303
ScrFI CCNGG 4 cut(s) 581, 1359, 1581, 1833
SduI GDGCHC 3 cut(s) 1002, 1734, 2031
SfaNI GCATC 6 cut(s) 231, 618, 708, 853, 1058, 1180
SfcI CTRYAG 2 cut(s) 306, 2005
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 2 cut(s) 1405, 2076
SmiI ATTTAAAT 1 cut(s) 1062
SmiMI CAYNNNNRTG 5 cut(s) 474, 647, 1247, 1278, 1956
SmlI CTYRAG 4 cut(s) 409, 653, 802, 1225
SmoI CTYRAG 4 cut(s) 409, 653, 802, 1225
SphI GCATGC 1 cut(s) 652
SsiI CCGC 1 cut(s) 1193
SspI AATATT 2 cut(s) 1638, 1876
SspMI CTAG 3 cut(s) 75, 518, 1142
StyD4I CCNGG 4 cut(s) 579, 1357, 1579, 1831
StyI CCWWGG 2 cut(s) 74, 1846
SwaI ATTTAAAT 1 cut(s) 1062
TaaI ACNGT 1 cut(s) 2106
TaiI ACGT 3 cut(s) 27, 465, 2060
TaqI TCGA 4 cut(s) 58, 114, 1002, 1716
TaqII GACCGA 1 cut(s) 2064
TatI WGTACW 5 cut(s) 274, 594, 932, 1027, 1155
Tru1I TTAA 8 cut(s) 314, 654, 881, 969, 1061, 1079, 1226, 1902
Tru9I TTAA 8 cut(s) 314, 654, 881, 969, 1061, 1079, 1226, 1902
TscAI CASTG 3 cut(s) 490, 847, 1927
TseFI GTSAC 2 cut(s) 32, 657
TseI GCWGC 5 cut(s) 405, 540, 1991, 2007, 2039
Tsp45I GTSAC 2 cut(s) 32, 657
TspDTI ATGAA 7 cut(s) 189, 219, 551, 579, 1070, 1941, 1974
TspRI CASTG 3 cut(s) 490, 847, 1927
Van91I CCANNNNNTGG 1 cut(s) 770
Vha464I CTTAAG 2 cut(s) 653, 1225
VpaK11BI GGWCC 2 cut(s) 1405, 2076
XapI RAATTY 6 cut(s) 335, 434, 759, 1057, 1474, 1575
XbaI TCTAGA 1 cut(s) 517
XceI RCATGY 5 cut(s) 172, 275, 646, 652, 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XmaJI CCTAGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 1888
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 3 cut(s) 75, 518, 1142
ZraI GACGTC 1 cut(s) 463
ZrmI AGTACT 1 cut(s) 1157
Zsp2I ATGCAT 3 cut(s) 21, 174, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.