TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 24 - 196 | 3.6e-52 | TIR domain |
| TIR_2 | PF13676 | 26 - 122 | 1.1e-17 | TIR domain |
| NB-ARC | PF00931 | 205 - 376 | 1e-15 | NB-ARC domain |
| AAA_14 | PF13173 | 223 - 347 | 8.2e-06 | AAA domain |
| WHD_ROQ1 | PF23282 | 447 - 515 | 1.1e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_8 | PF13855 | 778 - 836 | 1.6e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 1619, 2533 |
| AccB1I | GGYRCC | 3 cut(s) | 282, 1619, 2533 |
| AciI | CCGC | 1 cut(s) | 2433 |
| AcsI | RAATTY | 3 cut(s) | 1787, 1850, 2763 |
| AcuI | CTGAAG | 2 cut(s) | 771, 3077 |
| AfaI | GTAC | 8 cut(s) | 160, 440, 1088, 1621, 2151, 2509, 2535, 2807 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 375, 3098, 3339, 3382 |
| AflII | CTTAAG | 1 cut(s) | 583 |
| AflIII | ACRYGT | 1 cut(s) | 3149 |
| AgeI | ACCGGT | 1 cut(s) | 984 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1990 |
| AhlI | ACTAGT | 1 cut(s) | 2257 |
| AjiI | CACGTC | 1 cut(s) | 2197 |
| AjnI | CCWGG | 7 cut(s) | 994, 2270, 2724, 2796, 2836, 2851, 3091 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2832, 2864 |
| Alw21I | GWGCWC | 4 cut(s) | 911, 2291, 2573, 3448 |
| Alw26I | GTCTC | 6 cut(s) | 621, 1894, 2019, 2068, 2481, 2835 |
| Alw44I | GTGCAC | 1 cut(s) | 2569 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 476, 2803 |
| AoxI | GGCC | 3 cut(s) | 2316, 2479, 2854 |
| ApaLI | GTGCAC | 1 cut(s) | 2569 |
| ApeKI | GCWGC | 3 cut(s) | 476, 1063, 2396 |
| ApoI | RAATTY | 3 cut(s) | 1787, 1850, 2763 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 376, 408 |
| AseI | ATTAAT | 1 cut(s) | 3039 |
| AsiGI | ACCGGT | 1 cut(s) | 984 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 113, 1278, 1533, 1788, 2767, 2939 |
| Asp718I | GGTACC | 2 cut(s) | 1619, 2533 |
| AspLEI | GCGC | 1 cut(s) | 576 |
| AspS9I | GGNCC | 5 cut(s) | 952, 2316, 2628, 2880, 3071 |
| AsuC2I | CCSGG | 1 cut(s) | 3315 |
| AsuHPI | GGTGA | 8 cut(s) | 107, 457, 1037, 1301, 2669, 3107, 3167, 3175 |
| AvaII | GGWCC | 4 cut(s) | 952, 2628, 2880, 3071 |
| BaeGI | GKGCMC | 1 cut(s) | 2573 |
| BanI | GGYRCC | 3 cut(s) | 282, 1619, 2533 |
| BanII | GRGCYC | 1 cut(s) | 911 |
| BbsI | GAAGAC | 6 cut(s) | 105, 116, 340, 1307, 1488, 2932 |
| Bbv12I | GWGCWC | 4 cut(s) | 911, 2291, 2573, 3448 |
| BbvI | GCAGC | 3 cut(s) | 463, 1050, 2383 |
| BciT130I | CCWGG | 7 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093 |
| BciVI | GTATCC | 2 cut(s) | 2899, 3027 |
| BclI | TGATCA | 3 cut(s) | 303, 328, 1336 |
| BcnI | CCSGG | 1 cut(s) | 3315 |
| BcoDI | GTCTC | 6 cut(s) | 621, 1894, 2019, 2068, 2481, 2835 |
| BcuI | ACTAGT | 1 cut(s) | 2257 |
| BfaI | CTAG | 9 cut(s) | 66, 912, 1020, 1541, 2069, 2258, 2388, 2448, 2717 |
| BfmI | CTRYAG | 2 cut(s) | 477, 1794 |
| BfrI | CTTAAG | 1 cut(s) | 583 |
| BfuI | GTATCC | 2 cut(s) | 2899, 3027 |
| BglII | AGATCT | 1 cut(s) | 481 |
| BisI | GCNGC | 3 cut(s) | 477, 1064, 2397 |
| BlsI | GCNGC | 3 cut(s) | 478, 1065, 2398 |
| BmcAI | AGTACT | 1 cut(s) | 2151 |
| Bme1390I | CCNGG | 8 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093, 3315 |
| Bme18I | GGWCC | 4 cut(s) | 952, 2628, 2880, 3071 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1990 |
| BmgBI | CACGTC | 1 cut(s) | 2197 |
| BmgT120I | GGNCC | 5 cut(s) | 952, 2316, 2628, 2880, 3071 |
| BmiI | GGNNCC | 8 cut(s) | 284, 1554, 1621, 2438, 2535, 2629, 2673, 2881 |
| BmrFI | CCNGG | 8 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093, 3315 |
| BpiI | GAAGAC | 6 cut(s) | 105, 116, 340, 1307, 1488, 2932 |
| BpmI | CTGGAG | 4 cut(s) | 233, 1733, 2859, 3306 |
| BpuEI | CTTGAG | 5 cut(s) | 103, 603, 2027, 2275, 2368 |
| BpuMI | CCSGG | 1 cut(s) | 3315 |
| Bsa29I | ATCGAT | 2 cut(s) | 1458, 2754 |
| BsaBI | GATNNNNATC | 3 cut(s) | 360, 942, 2976 |
| BsaI | GGTCTC | 1 cut(s) | 2481 |
| BsaJI | CCNNGG | 8 cut(s) | 91, 1166, 2271, 2330, 2733, 2797, 3258, 3314 |
| BsaWI | WCCGGW | 2 cut(s) | 984, 2455 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2832, 2862 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 375, 3098, 3339, 3382 |
| Bse118I | RCCGGY | 1 cut(s) | 984 |
| Bse1I | ACTGG | 8 cut(s) | 216, 1038, 1203, 2148, 2189, 2482, 2857, 3131 |
| Bse8I | GATNNNNATC | 3 cut(s) | 360, 942, 2976 |
| BseBI | CCWGG | 7 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093 |
| BseCI | ATCGAT | 2 cut(s) | 1458, 2754 |
| BseDI | CCNNGG | 8 cut(s) | 91, 1166, 2271, 2330, 2733, 2797, 3258, 3314 |
| BseGI | GGATG | 9 cut(s) | 22, 365, 1135, 1734, 1781, 2380, 2780, 3213, 3310 |
| BseJI | GATNNNNATC | 3 cut(s) | 360, 942, 2976 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 375, 3098, 3339, 3382 |
| BseMII | CTCAG | 5 cut(s) | 560, 833, 1783, 1966, 2443 |
| BseNI | ACTGG | 8 cut(s) | 216, 1038, 1203, 2148, 2189, 2482, 2857, 3131 |
| BseRI | GAGGAG | 2 cut(s) | 25, 331 |
| BseSI | GKGCMC | 1 cut(s) | 2573 |
| BseXI | GCAGC | 3 cut(s) | 463, 1050, 2383 |
| BsgI | GTGCAG | 2 cut(s) | 1047, 1643 |
| BshFI | GGCC | 3 cut(s) | 2318, 2481, 2856 |
| BshNI | GGYRCC | 3 cut(s) | 282, 1619, 2533 |
| BshTI | ACCGGT | 1 cut(s) | 984 |
| BshVI | ATCGAT | 2 cut(s) | 1458, 2754 |
| BsiHKAI | GWGCWC | 4 cut(s) | 911, 2291, 2573, 3448 |
| BsiSI | CCGG | 4 cut(s) | 206, 985, 2456, 3314 |
| BsiWI | CGTACG | 1 cut(s) | 158 |
| BslFI | GGGAC | 2 cut(s) | 217, 2814 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 375, 3098, 3339, 3382 |
| BsmAI | GTCTC | 6 cut(s) | 621, 1894, 2019, 2068, 2481, 2835 |
| BsmBI | CGTCTC | 1 cut(s) | 2835 |
| BsmFI | GGGAC | 2 cut(s) | 217, 2814 |
| BsmI | GAATGC | 5 cut(s) | 151, 693, 981, 1443, 3087 |
| BsnI | GGCC | 3 cut(s) | 2318, 2481, 2856 |
| Bso31I | GGTCTC | 1 cut(s) | 2481 |
| Bsp1286I | GDGCHC | 4 cut(s) | 911, 2291, 2573, 3448 |
| Bsp1407I | TGTACA | 1 cut(s) | 2507 |
| BspACI | CCGC | 1 cut(s) | 2433 |
| BspANI | GGCC | 3 cut(s) | 2318, 2481, 2856 |
| BspCNI | CTCAG | 5 cut(s) | 561, 834, 1782, 1965, 2442 |
| BspDI | ATCGAT | 2 cut(s) | 1458, 2754 |
| BspHI | TCATGA | 4 cut(s) | 70, 306, 1339, 1963 |
| BspLI | GGNNCC | 8 cut(s) | 284, 1554, 1621, 2438, 2535, 2629, 2673, 2881 |
| BspMAI | CTGCAG | 2 cut(s) | 481, 1798 |
| BspT107I | GGYRCC | 3 cut(s) | 282, 1619, 2533 |
| BspTI | CTTAAG | 1 cut(s) | 583 |
| BspTNI | GGTCTC | 1 cut(s) | 2481 |
| BsrFI | RCCGGY | 1 cut(s) | 984 |
| BsrGI | TGTACA | 1 cut(s) | 2507 |
| BsrI | ACTGG | 8 cut(s) | 216, 1038, 1203, 2148, 2189, 2482, 2857, 3131 |
| BssAI | RCCGGY | 1 cut(s) | 984 |
| BssECI | CCNNGG | 8 cut(s) | 91, 1166, 2271, 2330, 2733, 2797, 3258, 3314 |
| BssT1I | CCWWGG | 2 cut(s) | 1166, 2733 |
| Bst2UI | CCWGG | 7 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093 |
| Bst6I | CTCTTC | 3 cut(s) | 621, 1229, 1519 |
| BstAFI | CTTAAG | 1 cut(s) | 583 |
| BstAUI | TGTACA | 1 cut(s) | 2507 |
| BstC8I | GCNNGC | 4 cut(s) | 151, 1119, 1369, 1693 |
| BstDSI | CCRYGG | 2 cut(s) | 2330, 3258 |
| BstF5I | GGATG | 9 cut(s) | 22, 365, 1135, 1734, 1781, 2380, 2780, 3213, 3310 |
| BstHHI | GCGC | 1 cut(s) | 576 |
| BstMAI | GTCTC | 6 cut(s) | 621, 1894, 2019, 2068, 2481, 2835 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2862, 2871 |
| BstNI | CCWGG | 7 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093 |
| BstNSI | RCATGY | 3 cut(s) | 1121, 1371, 3153 |
| BstSCI | CCNGG | 8 cut(s) | 994, 2270, 2724, 2796, 2836, 2851, 3091, 3313 |
| BstSFI | CTRYAG | 2 cut(s) | 477, 1794 |
| BstSLI | GKGCMC | 1 cut(s) | 2573 |
| BstV1I | GCAGC | 3 cut(s) | 463, 1050, 2383 |
| BstV2I | GAAGAC | 6 cut(s) | 105, 116, 340, 1307, 1488, 2932 |
| BstX2I | RGATCY | 5 cut(s) | 481, 1156, 1941, 2425, 3063 |
| BstYI | RGATCY | 5 cut(s) | 481, 1156, 1941, 2425, 3063 |
| Bsu15I | ATCGAT | 2 cut(s) | 1458, 2754 |
| BsuI | GTATCC | 2 cut(s) | 2899, 3027 |
| BsuRI | GGCC | 3 cut(s) | 2318, 2481, 2856 |
| BsuTUI | ATCGAT | 2 cut(s) | 1458, 2754 |
| BtgI | CCRYGG | 2 cut(s) | 2330, 3258 |
| BtgZI | GCGATG | 1 cut(s) | 466 |
| BtrI | CACGTC | 1 cut(s) | 2197 |
| BtsCI | GGATG | 9 cut(s) | 22, 365, 1135, 1734, 1781, 2380, 2780, 3213, 3310 |
| BtsIMutI | CAGTG | 7 cut(s) | 117, 1180, 1196, 1777, 2196, 3124, 3448 |
| Cac8I | GCNNGC | 4 cut(s) | 151, 1119, 1369, 1693 |
| CaiI | CAGNNNCTG | 2 cut(s) | 476, 2803 |
| CciI | TCATGA | 4 cut(s) | 70, 306, 1339, 1963 |
| CfoI | GCGC | 1 cut(s) | 576 |
| Cfr10I | RCCGGY | 1 cut(s) | 984 |
| Cfr13I | GGNCC | 5 cut(s) | 952, 2316, 2628, 2880, 3071 |
| ClaI | ATCGAT | 2 cut(s) | 1458, 2754 |
| Csp6I | GTAC | 8 cut(s) | 159, 439, 1087, 1620, 2150, 2508, 2534, 2806 |
| CspAI | ACCGGT | 1 cut(s) | 984 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1155, 1190, 2319, 2354 |
| CviQI | GTAC | 8 cut(s) | 159, 439, 1087, 1620, 2150, 2508, 2534, 2806 |
| DraI | TTTAAA | 1 cut(s) | 3435 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1990 |
| Eam1104I | CTCTTC | 3 cut(s) | 621, 1229, 1519 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1990 |
| EarI | CTCTTC | 3 cut(s) | 621, 1229, 1519 |
| Ecl136II | GAGCTC | 1 cut(s) | 909 |
| Eco130I | CCWWGG | 2 cut(s) | 1166, 2733 |
| Eco24I | GRGCYC | 1 cut(s) | 911 |
| Eco31I | GGTCTC | 1 cut(s) | 2481 |
| Eco32I | GATATC | 3 cut(s) | 775, 1294, 3388 |
| Eco47I | GGWCC | 4 cut(s) | 952, 2628, 2880, 3071 |
| Eco53kI | GAGCTC | 1 cut(s) | 909 |
| Eco57I | CTGAAG | 2 cut(s) | 771, 3077 |
| EcoICRI | GAGCTC | 1 cut(s) | 909 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2880 |
| EcoRI | GAATTC | 2 cut(s) | 1850, 2763 |
| EcoRII | CCWGG | 7 cut(s) | 994, 2270, 2724, 2796, 2836, 2851, 3091 |
| EcoRV | GATATC | 3 cut(s) | 775, 1294, 3388 |
| EcoT14I | CCWWGG | 2 cut(s) | 1166, 2733 |
| EcoT22I | ATGCAT | 4 cut(s) | 271, 967, 1503, 1720 |
| EcoT38I | GRGCYC | 1 cut(s) | 911 |
| ErhI | CCWWGG | 2 cut(s) | 1166, 2733 |
| Esp3I | CGTCTC | 1 cut(s) | 2835 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1688, 1720 |
| FaqI | GGGAC | 2 cut(s) | 217, 2814 |
| FauI | CCCGC | 1 cut(s) | 2426 |
| FbaI | TGATCA | 3 cut(s) | 303, 328, 1336 |
| Fnu4HI | GCNGC | 3 cut(s) | 477, 1064, 2397 |
| FokI | GGATG | 9 cut(s) | 9, 352, 1122, 1741, 1788, 2387, 2787, 3200, 3297 |
| FriOI | GRGCYC | 1 cut(s) | 911 |
| Fsp4HI | GCNGC | 3 cut(s) | 477, 1064, 2397 |
| FspBI | CTAG | 9 cut(s) | 66, 912, 1020, 1541, 2069, 2258, 2388, 2448, 2717 |
| GlaI | GCGC | 1 cut(s) | 575 |
| GluI | GCNGC | 3 cut(s) | 477, 1064, 2397 |
| GsuI | CTGGAG | 4 cut(s) | 233, 1733, 2859, 3306 |
| HaeIII | GGCC | 3 cut(s) | 2318, 2481, 2856 |
| HapII | CCGG | 4 cut(s) | 206, 985, 2456, 3314 |
| HhaI | GCGC | 1 cut(s) | 576 |
| Hin6I | GCGC | 1 cut(s) | 574 |
| HinP1I | GCGC | 1 cut(s) | 574 |
| HincII | GTYRAC | 3 cut(s) | 592, 708, 3297 |
| HindII | GTYRAC | 3 cut(s) | 592, 708, 3297 |
| HindIII | AAGCTT | 2 cut(s) | 2035, 2117 |
| HpaII | CCGG | 4 cut(s) | 206, 985, 2456, 3314 |
| HphI | GGTGA | 8 cut(s) | 107, 457, 1037, 1301, 2669, 3107, 3167, 3175 |
| Hpy166II | GTNNAC | 9 cut(s) | 592, 708, 952, 2194, 2344, 2571, 3074, 3226, 3297 |
| Hpy8I | GTNNAC | 9 cut(s) | 592, 708, 952, 2194, 2344, 2571, 3074, 3226, 3297 |
| HpyCH4IV | ACGT | 2 cut(s) | 161, 2196 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2862, 2871 |
| HpySE526I | ACGT | 2 cut(s) | 161, 2196 |
| HspAI | GCGC | 1 cut(s) | 574 |
| KpnI | GGTACC | 2 cut(s) | 1623, 2537 |
| Ksp22I | TGATCA | 3 cut(s) | 303, 328, 1336 |
| LmnI | GCTCC | 1 cut(s) | 1552 |
| Lsp1109I | GCAGC | 3 cut(s) | 463, 1050, 2383 |
| MaeI | CTAG | 9 cut(s) | 66, 912, 1020, 1541, 2069, 2258, 2388, 2448, 2717 |
| MaeII | ACGT | 2 cut(s) | 161, 2196 |
| MfeI | CAATTG | 2 cut(s) | 1476, 1629 |
| MflI | RGATCY | 5 cut(s) | 481, 1156, 1941, 2425, 3063 |
| MhlI | GDGCHC | 4 cut(s) | 911, 2291, 2573, 3448 |
| MlyI | GAGTC | 5 cut(s) | 533, 1141, 2063, 2359, 2722 |
| MmeI | TCCRAC | 3 cut(s) | 586, 2655, 3044 |
| Mph1103I | ATGCAT | 4 cut(s) | 271, 967, 1503, 1720 |
| MroXI | GAANNNNTTC | 6 cut(s) | 113, 1278, 1533, 1788, 2767, 2939 |
| MslI | CAYNNNNRTG | 4 cut(s) | 960, 1382, 1962, 2747 |
| MspA1I | CMGCKG | 2 cut(s) | 326, 2433 |
| MspCI | CTTAAG | 1 cut(s) | 583 |
| MspI | CCGG | 4 cut(s) | 206, 985, 2456, 3314 |
| MspR9I | CCNGG | 8 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093, 3315 |
| MunI | CAATTG | 2 cut(s) | 1476, 1629 |
| Mva1269I | GAATGC | 5 cut(s) | 151, 693, 981, 1443, 3087 |
| MvaI | CCWGG | 7 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2862, 2871 |
| NciI | CCSGG | 1 cut(s) | 3315 |
| NlaIV | GGNNCC | 8 cut(s) | 284, 1554, 1621, 2438, 2535, 2629, 2673, 2881 |
| NmuCI | GTSAC | 5 cut(s) | 1514, 2260, 3122, 3163, 3247 |
| NsiI | ATGCAT | 4 cut(s) | 271, 967, 1503, 1720 |
| NspI | RCATGY | 3 cut(s) | 1121, 1371, 3153 |
| PaeI | GCATGC | 2 cut(s) | 1121, 1371 |
| PagI | TCATGA | 4 cut(s) | 70, 306, 1339, 1963 |
| PciI | ACATGT | 1 cut(s) | 3149 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 163 |
| PctI | GAATGC | 5 cut(s) | 151, 693, 981, 1443, 3087 |
| PdmI | GAANNNNTTC | 6 cut(s) | 113, 1278, 1533, 1788, 2767, 2939 |
| Pfl23II | CGTACG | 1 cut(s) | 158 |
| PflFI | GACNNNGTC | 1 cut(s) | 1131 |
| PfoI | TCCNGGA | 2 cut(s) | 994, 2836 |
| PinAI | ACCGGT | 1 cut(s) | 984 |
| PkrI | GCNGC | 3 cut(s) | 478, 1065, 2398 |
| PleI | GAGTC | 5 cut(s) | 532, 1140, 2062, 2358, 2721 |
| PpsI | GAGTC | 5 cut(s) | 532, 1140, 2062, 2358, 2721 |
| PpuMI | RGGWCCY | 1 cut(s) | 2880 |
| PscI | ACATGT | 1 cut(s) | 3149 |
| PshBI | ATTAAT | 1 cut(s) | 3039 |
| Psp124BI | GAGCTC | 1 cut(s) | 911 |
| Psp5II | RGGWCCY | 1 cut(s) | 2880 |
| Psp6I | CCWGG | 7 cut(s) | 994, 2270, 2724, 2796, 2836, 2851, 3091 |
| PspGI | CCWGG | 7 cut(s) | 994, 2270, 2724, 2796, 2836, 2851, 3091 |
| PspLI | CGTACG | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 8 cut(s) | 284, 1554, 1621, 2438, 2535, 2629, 2673, 2881 |
| PspPI | GGNCC | 5 cut(s) | 952, 2316, 2628, 2880, 3071 |
| PspPPI | RGGWCCY | 1 cut(s) | 2880 |
| PstI | CTGCAG | 2 cut(s) | 481, 1798 |
| PstNI | CAGNNNCTG | 2 cut(s) | 476, 2803 |
| PsuI | RGATCY | 5 cut(s) | 481, 1156, 1941, 2425, 3063 |
| PsyI | GACNNNGTC | 1 cut(s) | 1131 |
| PvuII | CAGCTG | 1 cut(s) | 326 |
| RsaI | GTAC | 8 cut(s) | 160, 440, 1088, 1621, 2151, 2509, 2535, 2807 |
| RsaNI | GTAC | 8 cut(s) | 159, 439, 1087, 1620, 2150, 2508, 2534, 2806 |
| RseI | CAYNNNNRTG | 4 cut(s) | 960, 1382, 1962, 2747 |
| SacI | GAGCTC | 1 cut(s) | 911 |
| SatI | GCNGC | 3 cut(s) | 477, 1064, 2397 |
| Sau96I | GGNCC | 5 cut(s) | 952, 2316, 2628, 2880, 3071 |
| SbfI | CCTGCAGG | 1 cut(s) | 1798 |
| ScaI | AGTACT | 1 cut(s) | 2151 |
| SchI | GAGTC | 5 cut(s) | 533, 1141, 2063, 2359, 2722 |
| ScrFI | CCNGG | 8 cut(s) | 996, 2272, 2726, 2798, 2838, 2853, 3093, 3315 |
| SdaI | CCTGCAGG | 1 cut(s) | 1798 |
| SduI | GDGCHC | 4 cut(s) | 911, 2291, 2573, 3448 |
| SfcI | CTRYAG | 2 cut(s) | 477, 1794 |
| SinI | GGWCC | 4 cut(s) | 952, 2628, 2880, 3071 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 960, 1382, 1962, 2747 |
| SmlI | CTYRAG | 6 cut(s) | 82, 583, 618, 2006, 2290, 2347 |
| SmoI | CTYRAG | 6 cut(s) | 82, 583, 618, 2006, 2290, 2347 |
| SpeI | ACTAGT | 1 cut(s) | 2257 |
| SphI | GCATGC | 2 cut(s) | 1121, 1371 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1798 |
| SsiI | CCGC | 1 cut(s) | 2433 |
| SspI | AATATT | 3 cut(s) | 199, 3001, 3370 |
| SspMI | CTAG | 9 cut(s) | 66, 912, 1020, 1541, 2069, 2258, 2388, 2448, 2717 |
| SstI | GAGCTC | 1 cut(s) | 911 |
| StyD4I | CCNGG | 8 cut(s) | 994, 2270, 2724, 2796, 2836, 2851, 3091, 3313 |
| StyI | CCWWGG | 2 cut(s) | 1166, 2733 |
| TaiI | ACGT | 2 cut(s) | 164, 2199 |
| TaqI | TCGA | 9 cut(s) | 166, 225, 360, 933, 1458, 2280, 2302, 2754, 3142 |
| TaqII | GACCGA | 2 cut(s) | 2935, 3282 |
| TatI | WGTACW | 3 cut(s) | 438, 2149, 2507 |
| TscAI | CASTG | 7 cut(s) | 124, 1187, 1203, 1777, 2196, 3131, 3448 |
| TseFI | GTSAC | 5 cut(s) | 1514, 2260, 3122, 3163, 3247 |
| TseI | GCWGC | 3 cut(s) | 476, 1063, 2396 |
| Tsp45I | GTSAC | 5 cut(s) | 1514, 2260, 3122, 3163, 3247 |
| TspGWI | ACGGA | 4 cut(s) | 328, 1448, 2347, 3275 |
| TspRI | CASTG | 7 cut(s) | 124, 1187, 1203, 1777, 2196, 3131, 3448 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1131 |
| Vha464I | CTTAAG | 1 cut(s) | 583 |
| VneI | GTGCAC | 1 cut(s) | 2569 |
| VpaK11BI | GGWCC | 4 cut(s) | 952, 2628, 2880, 3071 |
| VspI | ATTAAT | 1 cut(s) | 3039 |
| XapI | RAATTY | 3 cut(s) | 1787, 1850, 2763 |
| XbaI | TCTAGA | 2 cut(s) | 911, 1540 |
| XceI | RCATGY | 3 cut(s) | 1121, 1371, 3153 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1757, 2057 |
| XmnI | GAANNNNTTC | 6 cut(s) | 113, 1278, 1533, 1788, 2767, 2939 |
| XspI | CTAG | 9 cut(s) | 66, 912, 1020, 1541, 2069, 2258, 2388, 2448, 2717 |
| ZrmI | AGTACT | 1 cut(s) | 2151 |
| Zsp2I | ATGCAT | 4 cut(s) | 271, 967, 1503, 1720 |