Rw5G018950

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
24490537 .. 24491363
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018950.1

Sequence Viewer

Length: 396 bp
ATGGCAACCAAAAGTACCTCCTCCTCAGTTTTTCCTTCTTCCTCTTCTTCATATCCACCTTGGACCTATGATGTCTTCCTCAGCTTCAGAGAGATTGTTGAGTGCATGAAAGAGATGGGACAGACGGTGCTTCCCATTTTCTATAATGTAGATCCATCAAATGTACGGAAACAAACGGGAAGCTTTGCAGAAGCCTTTGATGCACATGAAGAACACTTCAAGGATAACTTAGAAAAAGTGCAAAGGTGGAGAGCTGCTTTGACTGAAGTGGCCAATCTTTCCGGATTTCATCTCCAAGATGGACACATAGATAGATATATATGTACAAGGGGACTGCTGATACAGAAAGGGATACTGCAAGCACAACCCCAGGGAAATGGTGAAGGTATGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

5.75

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 29 - 100 2e-20 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 281
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 270
AcuI CTGAAG 2 cut(s) 70, 285
AfaI GTAC 3 cut(s) 16, 165, 325
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 3 cut(s) 84, 183, 254
AluI AGCT 3 cut(s) 84, 183, 254
AlwI GGATC 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 281
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 63
BalI TGGCCA 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 241
BccI CCATC 3 cut(s) 109, 163, 293
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 1 cut(s) 345
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 59, 369, 370
BsaWI WCCGGW 1 cut(s) 281
BseAI TCCGGA 1 cut(s) 281
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 59, 369, 370
BseMII CTCAG 2 cut(s) 39, 94
BseRI GAGGAG 2 cut(s) 10, 13
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 2 cut(s) 132, 345
BsmFI GGGAC 2 cut(s) 132, 345
BsnI GGCC 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 323
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 2 cut(s) 38, 93
BspEI TCCGGA 1 cut(s) 281
BspPI GGATC 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 59, 369, 370
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 25, 80, 229
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 377
BstYI RGATCY 1 cut(s) 151
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 3 cut(s) 15, 164, 324
CviAII CATG 2 cut(s) 106, 206
CviJI RGCY 6 cut(s) 84, 183, 194, 254, 272, 393
CviKI_1 RGCY 6 cut(s) 84, 183, 194, 254, 272, 393
CviQI GTAC 3 cut(s) 15, 164, 324
DdeI CTNAG 3 cut(s) 25, 80, 229
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 63
Eco57I CTGAAG 2 cut(s) 70, 285
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 2 cut(s) 109, 209
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 2 cut(s) 132, 345
FatI CATG 2 cut(s) 105, 205
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 282
Hin1II CATG 2 cut(s) 109, 209
HindIII AAGCTT 1 cut(s) 181
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 282
HpyAV CCTTC 2 cut(s) 45, 377
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 105, 188, 203, 241, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 25, 80, 229
Hsp92II CATG 2 cut(s) 109, 209
Kpn2I TCCGGA 1 cut(s) 281
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 3 cut(s) 295, 356, 383
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 190
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 5 cut(s) 30, 36, 39, 67, 221
MflI RGATCY 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 272
MluNI TGGCCA 1 cut(s) 272
MnlI CCTC 5 cut(s) 28, 31, 34, 52, 89
Mox20I TGGCCA 1 cut(s) 272
MroI TCCGGA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 151
NlaIII CATG 2 cut(s) 109, 209
PasI CCCWGGG 1 cut(s) 370
PkrI GCNGC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspPI GGNCC 1 cut(s) 63
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 3 cut(s) 16, 165, 325
RsaNI GTAC 3 cut(s) 15, 164, 324
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 371
SetI ASST 8 cut(s) 20, 61, 68, 86, 185, 248, 256, 388
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 127
TatI WGTACW 1 cut(s) 323
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 39, 122, 222, 278
TspGWI ACGGA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.