TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 56 - 124 | 2.9e-19 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 311 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 521 |
| AfaI | GTAC | 1 cut(s) | 260 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 521, 854 |
| AgsI | TTSAA | 4 cut(s) | 41, 236, 586, 854 |
| AjnI | CCWGG | 2 cut(s) | 174, 885 |
| AluBI | AGCT | 4 cut(s) | 35, 110, 325, 607 |
| AluI | AGCT | 4 cut(s) | 35, 110, 325, 607 |
| Alw21I | GWGCWC | 1 cut(s) | 94 |
| Alw26I | GTCTC | 2 cut(s) | 678, 899 |
| Alw44I | GTGCAC | 1 cut(s) | 90 |
| AoxI | GGCC | 1 cut(s) | 523 |
| ApaLI | GTGCAC | 1 cut(s) | 90 |
| ApeKI | GCWGC | 1 cut(s) | 377 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 111, 867 |
| AspLEI | GCGC | 2 cut(s) | 20, 686 |
| AsuHPI | GGTGA | 1 cut(s) | 340 |
| AsuNHI | GCTAGC | 1 cut(s) | 473 |
| BaeGI | GKGCMC | 1 cut(s) | 94 |
| BanI | GGYRCC | 1 cut(s) | 311 |
| Bbv12I | GWGCWC | 1 cut(s) | 94 |
| BbvI | GCAGC | 1 cut(s) | 389 |
| BccI | CCATC | 1 cut(s) | 239 |
| BciT130I | CCWGG | 2 cut(s) | 176, 887 |
| BcoDI | GTCTC | 2 cut(s) | 678, 899 |
| BfaI | CTAG | 5 cut(s) | 242, 374, 474, 557, 725 |
| BisI | GCNGC | 1 cut(s) | 378 |
| BlsI | GCNGC | 1 cut(s) | 379 |
| Bme1390I | CCNGG | 2 cut(s) | 176, 887 |
| BmiI | GGNNCC | 2 cut(s) | 313, 387 |
| BmrFI | CCNGG | 2 cut(s) | 176, 887 |
| BmsI | GCATC | 6 cut(s) | 145, 282, 284, 321, 421, 425 |
| BmtI | GCTAGC | 1 cut(s) | 477 |
| Bpu10I | CCTNAGC | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 1 cut(s) | 820 |
| BsaJI | CCNNGG | 1 cut(s) | 389 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 521, 854 |
| Bse1I | ACTGG | 1 cut(s) | 165 |
| Bse3DI | GCAATG | 1 cut(s) | 192 |
| BseBI | CCWGG | 2 cut(s) | 176, 887 |
| BseDI | CCNNGG | 1 cut(s) | 389 |
| BseGI | GGATG | 2 cut(s) | 254, 440 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 521, 854 |
| BseMI | GCAATG | 1 cut(s) | 192 |
| BseMII | CTCAG | 2 cut(s) | 479, 494 |
| BseNI | ACTGG | 1 cut(s) | 165 |
| BseRI | GAGGAG | 1 cut(s) | 398 |
| BseSI | GKGCMC | 1 cut(s) | 94 |
| BseXI | GCAGC | 1 cut(s) | 389 |
| BshFI | GGCC | 1 cut(s) | 525 |
| BshNI | GGYRCC | 1 cut(s) | 311 |
| BsiHKAI | GWGCWC | 1 cut(s) | 94 |
| BslFI | GGGAC | 1 cut(s) | 558 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 521, 854 |
| BsmAI | GTCTC | 2 cut(s) | 678, 899 |
| BsmBI | CGTCTC | 1 cut(s) | 899 |
| BsmFI | GGGAC | 1 cut(s) | 558 |
| BsnI | GGCC | 1 cut(s) | 525 |
| Bsp1286I | GDGCHC | 1 cut(s) | 94 |
| Bsp1407I | TGTACA | 1 cut(s) | 258 |
| BspANI | GGCC | 1 cut(s) | 525 |
| BspCNI | CTCAG | 2 cut(s) | 480, 495 |
| BspHI | TCATGA | 1 cut(s) | 920 |
| BspLI | GGNNCC | 2 cut(s) | 313, 387 |
| BspOI | GCTAGC | 1 cut(s) | 477 |
| BspQI | GCTCTTC | 1 cut(s) | 42 |
| BspT107I | GGYRCC | 1 cut(s) | 311 |
| BsrDI | GCAATG | 1 cut(s) | 192 |
| BsrGI | TGTACA | 1 cut(s) | 258 |
| BsrI | ACTGG | 1 cut(s) | 165 |
| BssECI | CCNNGG | 1 cut(s) | 389 |
| Bst2UI | CCWGG | 2 cut(s) | 176, 887 |
| Bst4CI | ACNGT | 4 cut(s) | 232, 567, 581, 878 |
| Bst6I | CTCTTC | 2 cut(s) | 42, 352 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 311 |
| BstAUI | TGTACA | 1 cut(s) | 258 |
| BstC8I | GCNNGC | 1 cut(s) | 475 |
| BstDEI | CTNAG | 6 cut(s) | 31, 95, 140, 298, 488, 503 |
| BstF5I | GGATG | 2 cut(s) | 254, 440 |
| BstHHI | GCGC | 2 cut(s) | 20, 686 |
| BstMAI | GTCTC | 2 cut(s) | 678, 899 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 311, 331 |
| BstNI | CCWGG | 2 cut(s) | 176, 887 |
| BstSCI | CCNGG | 2 cut(s) | 174, 885 |
| BstSLI | GKGCMC | 1 cut(s) | 94 |
| BstV1I | GCAGC | 1 cut(s) | 389 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 705 |
| BsuRI | GGCC | 1 cut(s) | 525 |
| BtgZI | GCGATG | 1 cut(s) | 168 |
| BtsCI | GGATG | 2 cut(s) | 254, 440 |
| BtsIMutI | CAGTG | 2 cut(s) | 158, 228 |
| Cac8I | GCNNGC | 1 cut(s) | 475 |
| CciI | TCATGA | 1 cut(s) | 920 |
| CfoI | GCGC | 2 cut(s) | 20, 686 |
| CseI | GACGC | 2 cut(s) | 526, 881 |
| Csp6I | GTAC | 1 cut(s) | 259 |
| CviAII | CATG | 5 cut(s) | 130, 335, 340, 823, 921 |
| CviQI | GTAC | 1 cut(s) | 259 |
| DdeI | CTNAG | 6 cut(s) | 31, 95, 140, 298, 488, 503 |
| Eam1104I | CTCTTC | 2 cut(s) | 42, 352 |
| EarI | CTCTTC | 2 cut(s) | 42, 352 |
| Eco32I | GATATC | 1 cut(s) | 820 |
| EcoRII | CCWGG | 2 cut(s) | 174, 885 |
| EcoRV | GATATC | 1 cut(s) | 820 |
| EcoT22I | ATGCAT | 1 cut(s) | 336 |
| Esp3I | CGTCTC | 1 cut(s) | 899 |
| FaeI | CATG | 5 cut(s) | 133, 338, 343, 826, 924 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 171, 203 |
| FaqI | GGGAC | 1 cut(s) | 558 |
| FatI | CATG | 5 cut(s) | 129, 334, 339, 822, 920 |
| Fnu4HI | GCNGC | 1 cut(s) | 378 |
| FokI | GGATG | 2 cut(s) | 261, 447 |
| Fsp4HI | GCNGC | 1 cut(s) | 378 |
| FspBI | CTAG | 5 cut(s) | 242, 374, 474, 557, 725 |
| GlaI | GCGC | 2 cut(s) | 19, 685 |
| GluI | GCNGC | 1 cut(s) | 378 |
| HaeIII | GGCC | 1 cut(s) | 525 |
| HgaI | GACGC | 2 cut(s) | 526, 881 |
| HhaI | GCGC | 2 cut(s) | 20, 686 |
| Hin1II | CATG | 5 cut(s) | 133, 338, 343, 826, 924 |
| Hin6I | GCGC | 2 cut(s) | 18, 684 |
| HinP1I | GCGC | 2 cut(s) | 18, 684 |
| HinfI | GANTC | 4 cut(s) | 343, 422, 452, 882 |
| HphI | GGTGA | 1 cut(s) | 340 |
| Hpy166II | GTNNAC | 3 cut(s) | 92, 261, 845 |
| Hpy188I | TCNGA | 4 cut(s) | 393, 448, 504, 837 |
| Hpy188III | TCNNGA | 2 cut(s) | 347, 921 |
| Hpy8I | GTNNAC | 3 cut(s) | 92, 261, 845 |
| HpyAV | CCTTC | 2 cut(s) | 197, 912 |
| HpyCH4III | ACNGT | 4 cut(s) | 232, 567, 581, 878 |
| HpyCH4IV | ACGT | 1 cut(s) | 397 |
| HpyCH4V | TGCA | 5 cut(s) | 92, 158, 334, 438, 645 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 311, 331 |
| HpyF3I | CTNAG | 6 cut(s) | 31, 95, 140, 298, 488, 503 |
| HpySE526I | ACGT | 1 cut(s) | 397 |
| Hsp92II | CATG | 5 cut(s) | 133, 338, 343, 826, 924 |
| HspAI | GCGC | 2 cut(s) | 18, 684 |
| LguI | GCTCTTC | 1 cut(s) | 42 |
| LmnI | GCTCC | 1 cut(s) | 385 |
| LpnPI | CCDG | 9 cut(s) | 6, 49, 146, 161, 188, 311, 474, 872, 899 |
| Lsp1109I | GCAGC | 1 cut(s) | 389 |
| LweI | GCATC | 6 cut(s) | 145, 282, 284, 321, 421, 425 |
| MaeI | CTAG | 5 cut(s) | 242, 374, 474, 557, 725 |
| MaeII | ACGT | 1 cut(s) | 397 |
| MaeIII | GTNAC | 1 cut(s) | 251 |
| MboII | GAAGA | 4 cut(s) | 29, 45, 369, 504 |
| MfeI | CAATTG | 1 cut(s) | 306 |
| MhlI | GDGCHC | 1 cut(s) | 94 |
| MluCI | AATT | 4 cut(s) | 306, 516, 532, 640 |
| MlyI | GAGTC | 1 cut(s) | 416 |
| MmeI | TCCRAC | 1 cut(s) | 84 |
| MnlI | CCTC | 4 cut(s) | 353, 376, 399, 599 |
| Mph1103I | ATGCAT | 1 cut(s) | 336 |
| MroXI | GAANNNNTTC | 2 cut(s) | 111, 867 |
| MseI | TTAA | 2 cut(s) | 497, 786 |
| MslI | CAYNNNNRTG | 2 cut(s) | 703, 876 |
| MspR9I | CCNGG | 2 cut(s) | 176, 887 |
| MunI | CAATTG | 1 cut(s) | 306 |
| MvaI | CCWGG | 2 cut(s) | 176, 887 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 311, 331 |
| NheI | GCTAGC | 1 cut(s) | 473 |
| NlaIII | CATG | 5 cut(s) | 133, 338, 343, 826, 924 |
| NlaIV | GGNNCC | 2 cut(s) | 313, 387 |
| NmeAIII | GCCGAG | 1 cut(s) | 712 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| NsiI | ATGCAT | 1 cut(s) | 336 |
| PagI | TCATGA | 1 cut(s) | 920 |
| PciSI | GCTCTTC | 1 cut(s) | 42 |
| PdmI | GAANNNNTTC | 2 cut(s) | 111, 867 |
| PfeI | GAWTC | 3 cut(s) | 343, 452, 882 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 521 |
| PkrI | GCNGC | 1 cut(s) | 379 |
| PleI | GAGTC | 1 cut(s) | 416 |
| PpsI | GAGTC | 1 cut(s) | 416 |
| Psp6I | CCWGG | 2 cut(s) | 174, 885 |
| PspGI | CCWGG | 2 cut(s) | 174, 885 |
| PspN4I | GGNNCC | 2 cut(s) | 313, 387 |
| RsaI | GTAC | 1 cut(s) | 260 |
| RsaNI | GTAC | 1 cut(s) | 259 |
| RseI | CAYNNNNRTG | 2 cut(s) | 703, 876 |
| SapI | GCTCTTC | 1 cut(s) | 42 |
| SaqAI | TTAA | 2 cut(s) | 497, 786 |
| SatI | GCNGC | 1 cut(s) | 378 |
| SchI | GAGTC | 1 cut(s) | 416 |
| ScrFI | CCNGG | 2 cut(s) | 176, 887 |
| SduI | GDGCHC | 1 cut(s) | 94 |
| SfaNI | GCATC | 6 cut(s) | 145, 282, 284, 321, 421, 425 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 703, 876 |
| SmlI | CTYRAG | 1 cut(s) | 799 |
| SmoI | CTYRAG | 1 cut(s) | 799 |
| Sse9I | AATT | 4 cut(s) | 306, 516, 532, 640 |
| SspI | AATATT | 1 cut(s) | 867 |
| SspMI | CTAG | 5 cut(s) | 242, 374, 474, 557, 725 |
| StyD4I | CCNGG | 2 cut(s) | 174, 885 |
| TaaI | ACNGT | 4 cut(s) | 232, 567, 581, 878 |
| TaiI | ACGT | 1 cut(s) | 400 |
| TaqI | TCGA | 1 cut(s) | 591 |
| TasI | AATT | 4 cut(s) | 306, 516, 532, 640 |
| TatI | WGTACW | 1 cut(s) | 258 |
| TfiI | GAWTC | 3 cut(s) | 343, 452, 882 |
| Tru1I | TTAA | 2 cut(s) | 497, 786 |
| Tru9I | TTAA | 2 cut(s) | 497, 786 |
| TscAI | CASTG | 2 cut(s) | 165, 235 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| TseI | GCWGC | 1 cut(s) | 377 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 4 cut(s) | 576, 860, 876, 902 |
| TspRI | CASTG | 2 cut(s) | 165, 235 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 521 |
| VneI | GTGCAC | 1 cut(s) | 90 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 322 |
| XmnI | GAANNNNTTC | 2 cut(s) | 111, 867 |
| XspI | CTAG | 5 cut(s) | 242, 374, 474, 557, 725 |
| Zsp2I | ATGCAT | 1 cut(s) | 336 |