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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2211, 2540 |
| AatII | GACGTC | 1 cut(s) | 1326 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2090 |
| AccI | GTMKAC | 2 cut(s) | 211, 2668 |
| AciI | CCGC | 3 cut(s) | 599, 2306, 2790 |
| AclWI | GGATC | 5 cut(s) | 678, 1309, 2391, 2402, 2612 |
| AcoI | YGGCCR | 1 cut(s) | 2517 |
| AcsI | RAATTY | 5 cut(s) | 366, 1620, 1762, 2268, 2418 |
| AcuI | CTGAAG | 2 cut(s) | 436, 2408 |
| AcyI | GRCGYC | 1 cut(s) | 1323 |
| AfaI | GTAC | 8 cut(s) | 510, 714, 796, 1162, 1457, 1849, 1884, 2218 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 239, 683, 2090, 2140, 2141, 2429 |
| AflII | CTTAAG | 1 cut(s) | 646 |
| AflIII | ACRYGT | 1 cut(s) | 1503 |
| AjnI | CCWGG | 7 cut(s) | 232, 535, 1440, 2139, 2194, 2422, 2671 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 782, 814 |
| Alw21I | GWGCWC | 3 cut(s) | 645, 1124, 2814 |
| Alw26I | GTCTC | 2 cut(s) | 1441, 1599 |
| AlwI | GGATC | 5 cut(s) | 678, 1309, 2391, 2402, 2612 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2117, 2146 |
| Ama87I | CYCGRG | 1 cut(s) | 159 |
| AoxI | GGCC | 4 cut(s) | 1339, 2197, 2517, 2791 |
| ApeKI | GCWGC | 3 cut(s) | 229, 2111, 2822 |
| ApoI | RAATTY | 5 cut(s) | 366, 1620, 1762, 2268, 2418 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 154, 890, 1074, 1389 |
| AspS9I | GGNCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| AsuHPI | GGTGA | 3 cut(s) | 839, 1021, 1931 |
| AsuII | TTCGAA | 1 cut(s) | 1137 |
| AsuNHI | GCTAGC | 1 cut(s) | 1973 |
| AvaI | CYCGRG | 1 cut(s) | 159 |
| AvaII | GGWCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| BaeGI | GKGCMC | 1 cut(s) | 2599 |
| BalI | TGGCCA | 1 cut(s) | 2519 |
| BanII | GRGCYC | 1 cut(s) | 645 |
| BauI | CACGAG | 1 cut(s) | 1451 |
| BbsI | GAAGAC | 2 cut(s) | 251, 2718 |
| Bbv12I | GWGCWC | 3 cut(s) | 645, 1124, 2814 |
| BbvI | GCAGC | 3 cut(s) | 216, 2123, 2809 |
| BccI | CCATC | 5 cut(s) | 947, 1582, 1610, 2458, 2873 |
| BceAI | ACGGC | 1 cut(s) | 358 |
| BciT130I | CCWGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| BcoDI | GTCTC | 2 cut(s) | 1441, 1599 |
| BfmI | CTRYAG | 1 cut(s) | 2511 |
| BfrI | CTTAAG | 1 cut(s) | 646 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2799 |
| BisI | GCNGC | 4 cut(s) | 230, 2112, 2791, 2823 |
| BlsI | GCNGC | 4 cut(s) | 231, 2113, 2792, 2824 |
| BmcAI | AGTACT | 1 cut(s) | 510 |
| Bme1390I | CCNGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| Bme18I | GGWCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| BmeT110I | CYCGRG | 1 cut(s) | 159 |
| BmgT120I | GGNCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| BmiI | GGNNCC | 3 cut(s) | 774, 2133, 2193 |
| BmrFI | CCNGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| BmsI | GCATC | 9 cut(s) | 181, 203, 493, 1254, 1479, 1898, 2311, 2333, 2764 |
| BmtI | GCTAGC | 1 cut(s) | 1977 |
| BpiI | GAAGAC | 2 cut(s) | 251, 2718 |
| BpmI | CTGGAG | 1 cut(s) | 1463 |
| Bpu10I | CCTNAGC | 1 cut(s) | 777 |
| Bpu14I | TTCGAA | 1 cut(s) | 1137 |
| BpuEI | CTTGAG | 2 cut(s) | 145, 1675 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1912 |
| BsaHI | GRCGYC | 1 cut(s) | 1323 |
| BsaJI | CCNNGG | 3 cut(s) | 1336, 2140, 2686 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1577, 1607, 2484, 2514 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 239, 683, 2090, 2140, 2141, 2429 |
| Bse118I | RCCGGY | 2 cut(s) | 2199, 2825 |
| Bse1I | ACTGG | 4 cut(s) | 147, 1568, 1793, 2122 |
| Bse3DI | GCAATG | 1 cut(s) | 252 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1912 |
| BseBI | CCWGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| BseDI | CCNNGG | 3 cut(s) | 1336, 2140, 2686 |
| BseJI | GATNNNNATC | 1 cut(s) | 1912 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 239, 683, 2090, 2140, 2141, 2429 |
| BseMI | GCAATG | 1 cut(s) | 252 |
| BseMII | CTCAG | 5 cut(s) | 503, 693, 1006, 1089, 1682 |
| BseNI | ACTGG | 4 cut(s) | 147, 1568, 1793, 2122 |
| BseSI | GKGCMC | 1 cut(s) | 2599 |
| BseXI | GCAGC | 3 cut(s) | 216, 2123, 2809 |
| BseYI | CCCAGC | 2 cut(s) | 36, 2180 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1828 |
| BshFI | GGCC | 4 cut(s) | 1341, 2199, 2519, 2793 |
| BsiEI | CGRYCG | 1 cut(s) | 1828 |
| BsiHKAI | GWGCWC | 3 cut(s) | 645, 1124, 2814 |
| BsiHKCI | CYCGRG | 1 cut(s) | 159 |
| BsiSI | CCGG | 2 cut(s) | 2200, 2826 |
| BslFI | GGGAC | 4 cut(s) | 1037, 2117, 2157, 2228 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 239, 683, 2090, 2140, 2141, 2429 |
| BsmAI | GTCTC | 2 cut(s) | 1441, 1599 |
| BsmFI | GGGAC | 4 cut(s) | 1037, 2117, 2157, 2228 |
| BsmI | GAATGC | 2 cut(s) | 981, 2100 |
| BsnI | GGCC | 4 cut(s) | 1341, 2199, 2519, 2793 |
| BsoBI | CYCGRG | 1 cut(s) | 159 |
| Bsp119I | TTCGAA | 1 cut(s) | 1137 |
| Bsp1286I | GDGCHC | 4 cut(s) | 645, 1124, 2599, 2814 |
| Bsp143I | GATC | 8 cut(s) | 523, 670, 1314, 1825, 2383, 2394, 2494, 2617 |
| Bsp19I | CCATGG | 1 cut(s) | 1336 |
| BspACI | CCGC | 3 cut(s) | 599, 2306, 2790 |
| BspANI | GGCC | 4 cut(s) | 1341, 2199, 2519, 2793 |
| BspCNI | CTCAG | 5 cut(s) | 504, 694, 1005, 1090, 1683 |
| BspHI | TCATGA | 2 cut(s) | 834, 1423 |
| BspLI | GGNNCC | 3 cut(s) | 774, 2133, 2193 |
| BspOI | GCTAGC | 1 cut(s) | 1977 |
| BspPI | GGATC | 5 cut(s) | 678, 1309, 2391, 2402, 2612 |
| BspQI | GCTCTTC | 1 cut(s) | 433 |
| BspT104I | TTCGAA | 1 cut(s) | 1137 |
| BspTI | CTTAAG | 1 cut(s) | 646 |
| BsrDI | GCAATG | 1 cut(s) | 252 |
| BsrFI | RCCGGY | 2 cut(s) | 2199, 2825 |
| BsrI | ACTGG | 4 cut(s) | 147, 1568, 1793, 2122 |
| BssAI | RCCGGY | 2 cut(s) | 2199, 2825 |
| BssECI | CCNNGG | 3 cut(s) | 1336, 2140, 2686 |
| BssMI | GATC | 8 cut(s) | 523, 670, 1314, 1825, 2383, 2394, 2494, 2617 |
| BssNAI | GTATAC | 2 cut(s) | 212, 2669 |
| BssNI | GRCGYC | 1 cut(s) | 1323 |
| BssSI | CACGAG | 1 cut(s) | 1451 |
| BssT1I | CCWWGG | 2 cut(s) | 1336, 2686 |
| Bst1107I | GTATAC | 2 cut(s) | 212, 2669 |
| Bst2BI | CACGAG | 1 cut(s) | 1451 |
| Bst2UI | CCWGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| Bst4CI | ACNGT | 5 cut(s) | 1160, 1953, 2148, 2696, 2889 |
| Bst6I | CTCTTC | 3 cut(s) | 433, 451, 1060 |
| BstACI | GRCGYC | 1 cut(s) | 1323 |
| BstAFI | CTTAAG | 1 cut(s) | 646 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 24 |
| BstBI | TTCGAA | 1 cut(s) | 1137 |
| BstC8I | GCNNGC | 8 cut(s) | 653, 657, 1167, 1511, 1975, 2085, 2827, 2844 |
| BstDSI | CCRYGG | 1 cut(s) | 1336 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 237 |
| BstKTI | GATC | 8 cut(s) | 526, 673, 1317, 1828, 2386, 2397, 2497, 2620 |
| BstMAI | GTCTC | 2 cut(s) | 1441, 1599 |
| BstMBI | GATC | 8 cut(s) | 523, 670, 1314, 1825, 2383, 2394, 2494, 2617 |
| BstMCI | CGRYCG | 1 cut(s) | 1828 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 24, 33, 1192, 1861, 2297, 2799 |
| BstNI | CCWGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| BstNSI | RCATGY | 4 cut(s) | 659, 1195, 1507, 1513 |
| BstSCI | CCNGG | 7 cut(s) | 232, 535, 1440, 2139, 2194, 2422, 2671 |
| BstSFI | CTRYAG | 1 cut(s) | 2511 |
| BstSLI | GKGCMC | 1 cut(s) | 2599 |
| BstV1I | GCAGC | 3 cut(s) | 216, 2123, 2809 |
| BstV2I | GAAGAC | 2 cut(s) | 251, 2718 |
| BstX2I | RGATCY | 4 cut(s) | 1314, 2383, 2394, 2617 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1337 |
| BstYI | RGATCY | 4 cut(s) | 1314, 2383, 2394, 2617 |
| BstZ17I | GTATAC | 2 cut(s) | 212, 2669 |
| BsuRI | GGCC | 4 cut(s) | 1341, 2199, 2519, 2793 |
| BtgI | CCRYGG | 1 cut(s) | 1336 |
| BtgZI | GCGATG | 1 cut(s) | 2310 |
| BtsIMutI | CAGTG | 2 cut(s) | 1575, 2115 |
| Cac8I | GCNNGC | 8 cut(s) | 653, 657, 1167, 1511, 1975, 2085, 2827, 2844 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2117, 2146 |
| CciI | TCATGA | 2 cut(s) | 834, 1423 |
| Cfr10I | RCCGGY | 2 cut(s) | 2199, 2825 |
| Cfr13I | GGNCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| Csp6I | GTAC | 8 cut(s) | 509, 713, 795, 1161, 1456, 1848, 1883, 2217 |
| CviQI | GTAC | 8 cut(s) | 509, 713, 795, 1161, 1456, 1848, 1883, 2217 |
| DpnI | GATC | 8 cut(s) | 525, 672, 1316, 1827, 2385, 2396, 2496, 2619 |
| DpnII | GATC | 8 cut(s) | 523, 670, 1314, 1825, 2383, 2394, 2494, 2617 |
| DraI | TTTAAA | 1 cut(s) | 384 |
| EaeI | YGGCCR | 1 cut(s) | 2517 |
| Eam1104I | CTCTTC | 3 cut(s) | 433, 451, 1060 |
| EarI | CTCTTC | 3 cut(s) | 433, 451, 1060 |
| Ecl136II | GAGCTC | 1 cut(s) | 643 |
| Eco130I | CCWWGG | 2 cut(s) | 1336, 2686 |
| Eco24I | GRGCYC | 1 cut(s) | 645 |
| Eco47I | GGWCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| Eco53kI | GAGCTC | 1 cut(s) | 643 |
| Eco57I | CTGAAG | 2 cut(s) | 436, 2408 |
| Eco88I | CYCGRG | 1 cut(s) | 159 |
| EcoICRI | GAGCTC | 1 cut(s) | 643 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 237 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2131 |
| EcoRI | GAATTC | 3 cut(s) | 1620, 2268, 2418 |
| EcoRII | CCWGG | 7 cut(s) | 232, 535, 1440, 2139, 2194, 2422, 2671 |
| EcoT14I | CCWWGG | 2 cut(s) | 1336, 2686 |
| EcoT22I | ATGCAT | 6 cut(s) | 196, 1044, 1197, 1913, 2100, 2326 |
| EcoT38I | GRGCYC | 1 cut(s) | 645 |
| ErhI | CCWWGG | 2 cut(s) | 1336, 2686 |
| FaqI | GGGAC | 4 cut(s) | 1037, 2117, 2157, 2228 |
| FauI | CCCGC | 1 cut(s) | 2299 |
| FauNDI | CATATG | 2 cut(s) | 489, 1090 |
| FblI | GTMKAC | 2 cut(s) | 211, 2668 |
| Fnu4HI | GCNGC | 4 cut(s) | 230, 2112, 2791, 2823 |
| FriOI | GRGCYC | 1 cut(s) | 645 |
| Fsp4HI | GCNGC | 4 cut(s) | 230, 2112, 2791, 2823 |
| GluI | GCNGC | 4 cut(s) | 230, 2112, 2791, 2823 |
| GsaI | CCCAGC | 2 cut(s) | 40, 2184 |
| GsuI | CTGGAG | 1 cut(s) | 1463 |
| HaeIII | GGCC | 4 cut(s) | 1341, 2199, 2519, 2793 |
| HapII | CCGG | 2 cut(s) | 2200, 2826 |
| Hin1I | GRCGYC | 1 cut(s) | 1323 |
| HindIII | AAGCTT | 2 cut(s) | 58, 448 |
| HpaII | CCGG | 2 cut(s) | 2200, 2826 |
| HphI | GGTGA | 3 cut(s) | 839, 1021, 1931 |
| Hpy166II | GTNNAC | 6 cut(s) | 212, 268, 484, 1456, 1885, 2669 |
| Hpy8I | GTNNAC | 6 cut(s) | 212, 268, 484, 1456, 1885, 2669 |
| HpyCH4III | ACNGT | 5 cut(s) | 1160, 1953, 2148, 2696, 2889 |
| HpyCH4IV | ACGT | 1 cut(s) | 1323 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 24, 33, 1192, 1861, 2297, 2799 |
| HpySE526I | ACGT | 1 cut(s) | 1323 |
| Hsp92I | GRCGYC | 1 cut(s) | 1323 |
| KroI | GCCGGC | 1 cut(s) | 2825 |
| KroNI | GCCGGC | 1 cut(s) | 2827 |
| Kzo9I | GATC | 8 cut(s) | 523, 670, 1314, 1825, 2383, 2394, 2494, 2617 |
| LguI | GCTCTTC | 1 cut(s) | 433 |
| LmnI | GCTCC | 5 cut(s) | 300, 640, 1999, 2662, 2817 |
| Lsp1109I | GCAGC | 3 cut(s) | 216, 2123, 2809 |
| LweI | GCATC | 9 cut(s) | 181, 203, 493, 1254, 1479, 1898, 2311, 2333, 2764 |
| MaeII | ACGT | 1 cut(s) | 1323 |
| MaeIII | GTNAC | 6 cut(s) | 183, 1009, 1055, 2261, 2369, 2690 |
| MalI | GATC | 8 cut(s) | 525, 672, 1316, 1827, 2385, 2396, 2496, 2619 |
| MboI | GATC | 8 cut(s) | 523, 670, 1314, 1825, 2383, 2394, 2494, 2617 |
| MfeI | CAATTG | 4 cut(s) | 1014, 1170, 2757, 2785 |
| MflI | RGATCY | 4 cut(s) | 1314, 2383, 2394, 2617 |
| MhlI | GDGCHC | 4 cut(s) | 645, 1124, 2599, 2814 |
| MlsI | TGGCCA | 1 cut(s) | 2519 |
| MluNI | TGGCCA | 1 cut(s) | 2519 |
| MlyI | GAGTC | 4 cut(s) | 171, 854, 1443, 1601 |
| MmeI | TCCRAC | 3 cut(s) | 127, 592, 2071 |
| Mox20I | TGGCCA | 1 cut(s) | 2519 |
| Mph1103I | ATGCAT | 6 cut(s) | 196, 1044, 1197, 1913, 2100, 2326 |
| MroNI | GCCGGC | 1 cut(s) | 2825 |
| MroXI | GAANNNNTTC | 4 cut(s) | 154, 890, 1074, 1389 |
| MscI | TGGCCA | 1 cut(s) | 2519 |
| MseI | TTAA | 9 cut(s) | 383, 429, 647, 809, 1515, 1628, 1685, 1733, 1919 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1335, 1508 |
| Msp20I | TGGCCA | 1 cut(s) | 2519 |
| MspA1I | CMGCKG | 2 cut(s) | 2087, 2822 |
| MspCI | CTTAAG | 1 cut(s) | 646 |
| MspI | CCGG | 2 cut(s) | 2200, 2826 |
| MspR9I | CCNGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| MunI | CAATTG | 4 cut(s) | 1014, 1170, 2757, 2785 |
| Mva1269I | GAATGC | 2 cut(s) | 981, 2100 |
| MvaI | CCWGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 24, 33, 1192, 1861, 2297, 2799 |
| NaeI | GCCGGC | 1 cut(s) | 2827 |
| NcoI | CCATGG | 1 cut(s) | 1336 |
| NdeI | CATATG | 2 cut(s) | 489, 1090 |
| NdeII | GATC | 8 cut(s) | 523, 670, 1314, 1825, 2383, 2394, 2494, 2617 |
| NgoMIV | GCCGGC | 1 cut(s) | 2825 |
| NheI | GCTAGC | 1 cut(s) | 1973 |
| NlaIV | GGNNCC | 3 cut(s) | 774, 2133, 2193 |
| NmeAIII | GCCGAG | 1 cut(s) | 1106 |
| NmuCI | GTSAC | 4 cut(s) | 1009, 1055, 2261, 2690 |
| NsiI | ATGCAT | 6 cut(s) | 196, 1044, 1197, 1913, 2100, 2326 |
| NspI | RCATGY | 4 cut(s) | 659, 1195, 1507, 1513 |
| NspV | TTCGAA | 1 cut(s) | 1137 |
| PaeI | GCATGC | 2 cut(s) | 659, 1513 |
| PaeR7I | CTCGAG | 1 cut(s) | 159 |
| PagI | TCATGA | 2 cut(s) | 834, 1423 |
| PciI | ACATGT | 1 cut(s) | 1503 |
| PciSI | GCTCTTC | 1 cut(s) | 433 |
| PctI | GAATGC | 2 cut(s) | 981, 2100 |
| PdiI | GCCGGC | 1 cut(s) | 2827 |
| PdmI | GAANNNNTTC | 4 cut(s) | 154, 890, 1074, 1389 |
| PflFI | GACNNNGTC | 1 cut(s) | 1715 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2090 |
| PfoI | TCCNGGA | 2 cut(s) | 535, 2422 |
| PkrI | GCNGC | 4 cut(s) | 231, 2113, 2792, 2824 |
| Ple19I | CGATCG | 1 cut(s) | 1828 |
| PleI | GAGTC | 4 cut(s) | 170, 854, 1443, 1600 |
| PpsI | GAGTC | 4 cut(s) | 170, 854, 1443, 1600 |
| PpuMI | RGGWCCY | 1 cut(s) | 2131 |
| PscI | ACATGT | 1 cut(s) | 1503 |
| PsiI | TTATAA | 2 cut(s) | 2211, 2540 |
| Psp124BI | GAGCTC | 1 cut(s) | 645 |
| Psp5II | RGGWCCY | 1 cut(s) | 2131 |
| Psp6I | CCWGG | 7 cut(s) | 232, 535, 1440, 2139, 2194, 2422, 2671 |
| PspFI | CCCAGC | 2 cut(s) | 36, 2180 |
| PspGI | CCWGG | 7 cut(s) | 232, 535, 1440, 2139, 2194, 2422, 2671 |
| PspN4I | GGNNCC | 3 cut(s) | 774, 2133, 2193 |
| PspPI | GGNCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| PspPPI | RGGWCCY | 1 cut(s) | 2131 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2117, 2146 |
| PsuI | RGATCY | 4 cut(s) | 1314, 2383, 2394, 2617 |
| PsyI | GACNNNGTC | 1 cut(s) | 1715 |
| PvuI | CGATCG | 1 cut(s) | 1828 |
| PvuII | CAGCTG | 2 cut(s) | 2087, 2822 |
| RsaI | GTAC | 8 cut(s) | 510, 714, 796, 1162, 1457, 1849, 1884, 2218 |
| RsaNI | GTAC | 8 cut(s) | 509, 713, 795, 1161, 1456, 1848, 1883, 2217 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1335, 1508 |
| SacI | GAGCTC | 1 cut(s) | 645 |
| SapI | GCTCTTC | 1 cut(s) | 433 |
| SaqAI | TTAA | 9 cut(s) | 383, 429, 647, 809, 1515, 1628, 1685, 1733, 1919 |
| SatI | GCNGC | 4 cut(s) | 230, 2112, 2791, 2823 |
| Sau3AI | GATC | 8 cut(s) | 523, 670, 1314, 1825, 2383, 2394, 2494, 2617 |
| Sau96I | GGNCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| ScaI | AGTACT | 1 cut(s) | 510 |
| SchI | GAGTC | 4 cut(s) | 171, 854, 1443, 1601 |
| ScrFI | CCNGG | 7 cut(s) | 234, 537, 1442, 2141, 2196, 2424, 2673 |
| SduI | GDGCHC | 4 cut(s) | 645, 1124, 2599, 2814 |
| SfaNI | GCATC | 9 cut(s) | 181, 203, 493, 1254, 1479, 1898, 2311, 2333, 2764 |
| SfcI | CTRYAG | 1 cut(s) | 2511 |
| Sfr274I | CTCGAG | 1 cut(s) | 159 |
| SfuI | TTCGAA | 1 cut(s) | 1137 |
| SinI | GGWCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| SlaI | CTCGAG | 1 cut(s) | 159 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1335, 1508 |
| SmlI | CTYRAG | 4 cut(s) | 124, 159, 646, 1654 |
| SmoI | CTYRAG | 4 cut(s) | 124, 159, 646, 1654 |
| SphI | GCATGC | 2 cut(s) | 659, 1513 |
| SsiI | CCGC | 3 cut(s) | 599, 2306, 2790 |
| SspI | AATATT | 1 cut(s) | 2481 |
| SstI | GAGCTC | 1 cut(s) | 645 |
| StyD4I | CCNGG | 7 cut(s) | 232, 535, 1440, 2139, 2194, 2422, 2671 |
| StyI | CCWWGG | 2 cut(s) | 1336, 2686 |
| TaaI | ACNGT | 5 cut(s) | 1160, 1953, 2148, 2696, 2889 |
| TaiI | ACGT | 1 cut(s) | 1326 |
| TaqI | TCGA | 5 cut(s) | 160, 165, 1137, 1824, 2272 |
| TatI | WGTACW | 5 cut(s) | 508, 794, 1455, 1847, 1882 |
| TauI | GCSGC | 1 cut(s) | 2793 |
| Tru1I | TTAA | 9 cut(s) | 383, 429, 647, 809, 1515, 1628, 1685, 1733, 1919 |
| Tru9I | TTAA | 9 cut(s) | 383, 429, 647, 809, 1515, 1628, 1685, 1733, 1919 |
| TscAI | CASTG | 2 cut(s) | 1575, 2122 |
| TseFI | GTSAC | 4 cut(s) | 1009, 1055, 2261, 2690 |
| TseI | GCWGC | 3 cut(s) | 229, 2111, 2822 |
| Tsp45I | GTSAC | 4 cut(s) | 1009, 1055, 2261, 2690 |
| TspGWI | ACGGA | 1 cut(s) | 1742 |
| TspRI | CASTG | 2 cut(s) | 1575, 2122 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1715 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2090 |
| Vha464I | CTTAAG | 1 cut(s) | 646 |
| VpaK11BI | GGWCC | 5 cut(s) | 484, 493, 614, 2131, 2859 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 237 |
| XapI | RAATTY | 5 cut(s) | 366, 1620, 1762, 2268, 2418 |
| XbaI | TCTAGA | 1 cut(s) | 1597 |
| XceI | RCATGY | 4 cut(s) | 659, 1195, 1507, 1513 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 659, 1438 |
| XhoI | CTCGAG | 1 cut(s) | 159 |
| XmiI | GTMKAC | 2 cut(s) | 211, 2668 |
| XmnI | GAANNNNTTC | 4 cut(s) | 154, 890, 1074, 1389 |
| ZraI | GACGTC | 1 cut(s) | 1324 |
| ZrmI | AGTACT | 1 cut(s) | 510 |
| Zsp2I | ATGCAT | 6 cut(s) | 196, 1044, 1197, 1913, 2100, 2326 |