TMV resistance protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1566, 1761 |
| AccB1I | GGYRCC | 1 cut(s) | 261 |
| AccBSI | CCGCTC | 1 cut(s) | 1164 |
| AccI | GTMKAC | 2 cut(s) | 1409, 1819 |
| AccII | CGCG | 2 cut(s) | 174, 312 |
| AccIII | TCCGGA | 1 cut(s) | 2101 |
| AciI | CCGC | 7 cut(s) | 85, 136, 312, 470, 1164, 1324, 2340 |
| AclWI | GGATC | 9 cut(s) | 341, 643, 933, 1529, 1542, 1915, 2764, 3041, 3117 |
| AcoI | YGGCCR | 2 cut(s) | 964, 2608 |
| AcsI | RAATTY | 5 cut(s) | 701, 1216, 2226, 2374, 2898 |
| AcuI | CTGAAG | 3 cut(s) | 706, 1072, 1644 |
| AcyI | GRCGYC | 1 cut(s) | 3163 |
| AfaI | GTAC | 8 cut(s) | 503, 951, 1155, 1584, 1603, 2645, 2851, 2982 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 112, 1124, 1501, 2774, 3068, 3416, 3513 |
| AflIII | ACRYGT | 3 cut(s) | 54, 2166, 2640 |
| AgeI | ACCGGT | 1 cut(s) | 2252 |
| AjiI | CACGTC | 1 cut(s) | 55 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2808, 2840 |
| Alw21I | GWGCWC | 1 cut(s) | 3198 |
| Alw26I | GTCTC | 8 cut(s) | 141, 357, 1601, 1670, 1714, 2047, 3354, 3435 |
| Alw44I | GTGCAC | 1 cut(s) | 3194 |
| AlwI | GGATC | 9 cut(s) | 341, 643, 933, 1529, 1542, 1915, 2764, 3041, 3117 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2779, 3278, 3444 |
| Ama87I | CYCGRG | 1 cut(s) | 600 |
| Aor13HI | TCCGGA | 1 cut(s) | 2101 |
| AoxI | GGCC | 5 cut(s) | 114, 784, 964, 1945, 2608 |
| ApaLI | GTGCAC | 1 cut(s) | 3194 |
| ApeKI | GCWGC | 4 cut(s) | 216, 1872, 3420, 3464 |
| ApoI | RAATTY | 5 cut(s) | 701, 1216, 2226, 2374, 2898 |
| AseI | ATTAAT | 1 cut(s) | 2022 |
| AsiGI | ACCGGT | 1 cut(s) | 2252 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1257, 3452 |
| AspS9I | GGNCC | 6 cut(s) | 115, 934, 1111, 1896, 3015, 3235 |
| AsuC2I | CCSGG | 1 cut(s) | 6 |
| AsuHPI | GGTGA | 9 cut(s) | 20, 88, 439, 850, 1280, 1852, 1962, 2270, 3137 |
| AvaI | CYCGRG | 1 cut(s) | 600 |
| AvaII | GGWCC | 5 cut(s) | 934, 1111, 1896, 3015, 3235 |
| AxyI | CCTNAGG | 1 cut(s) | 3066 |
| BaeGI | GKGCMC | 1 cut(s) | 3198 |
| BalI | TGGCCA | 1 cut(s) | 2610 |
| BamHI | GGATCC | 1 cut(s) | 1534 |
| BanI | GGYRCC | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 1199 |
| BauI | CACGAG | 1 cut(s) | 3197 |
| BbsI | GAAGAC | 2 cut(s) | 84, 692 |
| Bbv12I | GWGCWC | 1 cut(s) | 3198 |
| BbvI | GCAGC | 4 cut(s) | 228, 1884, 3432, 3451 |
| BccI | CCATC | 9 cut(s) | 209, 469, 491, 626, 1127, 1737, 1779, 1918, 3052 |
| BceAI | ACGGC | 2 cut(s) | 129, 368 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 205, 239 |
| BciVI | GTATCC | 1 cut(s) | 3194 |
| BclI | TGATCA | 2 cut(s) | 1315, 2682 |
| BcnI | CCSGG | 1 cut(s) | 6 |
| BcoDI | GTCTC | 8 cut(s) | 141, 357, 1601, 1670, 1714, 2047, 3354, 3435 |
| BfaI | CTAG | 5 cut(s) | 396, 788, 1391, 1985, 3314 |
| BfuI | GTATCC | 1 cut(s) | 3194 |
| BglII | AGATCT | 1 cut(s) | 463 |
| BisI | GCNGC | 4 cut(s) | 217, 1873, 3421, 3465 |
| BlpI | GCTNAGC | 1 cut(s) | 1026 |
| BlsI | GCNGC | 4 cut(s) | 218, 1874, 3422, 3466 |
| BmcAI | AGTACT | 2 cut(s) | 951, 1584 |
| Bme18I | GGWCC | 5 cut(s) | 934, 1111, 1896, 3015, 3235 |
| BmeT110I | CYCGRG | 1 cut(s) | 600 |
| BmgBI | CACGTC | 1 cut(s) | 55 |
| BmgT120I | GGNCC | 6 cut(s) | 115, 934, 1111, 1896, 3015, 3235 |
| BmiI | GGNNCC | 7 cut(s) | 263, 1536, 1897, 2712, 2826, 3236, 3237 |
| BmsI | GCATC | 6 cut(s) | 23, 600, 1470, 2085, 2350, 2724 |
| BpiI | GAAGAC | 2 cut(s) | 84, 692 |
| BpmI | CTGGAG | 1 cut(s) | 3292 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1026 |
| BpuEI | CTTGAG | 2 cut(s) | 586, 2069 |
| BpuMI | CCSGG | 1 cut(s) | 6 |
| Bsa29I | ATCGAT | 1 cut(s) | 345 |
| BsaBI | GATNNNNATC | 3 cut(s) | 590, 924, 2757 |
| BsaHI | GRCGYC | 1 cut(s) | 3163 |
| BsaI | GGTCTC | 1 cut(s) | 1601 |
| BsaJI | CCNNGG | 7 cut(s) | 117, 257, 2369, 2773, 3018, 3158, 3512 |
| BsaWI | WCCGGW | 4 cut(s) | 371, 402, 2101, 2252 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3290, 3320 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 112, 1124, 1501, 2774, 3068, 3416, 3513 |
| Bse118I | RCCGGY | 3 cut(s) | 328, 966, 2252 |
| Bse1I | ACTGG | 4 cut(s) | 1962, 1998, 3309, 3449 |
| Bse21I | CCTNAGG | 1 cut(s) | 3066 |
| Bse3DI | GCAATG | 3 cut(s) | 693, 1341, 3459 |
| Bse8I | GATNNNNATC | 3 cut(s) | 590, 924, 2757 |
| BseAI | TCCGGA | 1 cut(s) | 2101 |
| BseCI | ATCGAT | 1 cut(s) | 345 |
| BseDI | CCNNGG | 7 cut(s) | 117, 257, 2369, 2773, 3018, 3158, 3512 |
| BseJI | GATNNNNATC | 3 cut(s) | 590, 924, 2757 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 112, 1124, 1501, 2774, 3068, 3416, 3513 |
| BseMI | GCAATG | 3 cut(s) | 693, 1341, 3459 |
| BseNI | ACTGG | 4 cut(s) | 1962, 1998, 3309, 3449 |
| BseRI | GAGGAG | 1 cut(s) | 21 |
| BseSI | GKGCMC | 1 cut(s) | 3198 |
| BseXI | GCAGC | 4 cut(s) | 228, 1884, 3432, 3451 |
| BsgI | GTGCAG | 1 cut(s) | 1496 |
| Bsh1236I | CGCG | 2 cut(s) | 174, 312 |
| BshFI | GGCC | 5 cut(s) | 116, 786, 966, 1947, 2610 |
| BshNI | GGYRCC | 1 cut(s) | 261 |
| BshTI | ACCGGT | 1 cut(s) | 2252 |
| BshVI | ATCGAT | 1 cut(s) | 345 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3198 |
| BsiHKCI | CYCGRG | 1 cut(s) | 600 |
| BslFI | GGGAC | 4 cut(s) | 1909, 1962, 2790, 3248 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 112, 1124, 1501, 2774, 3068, 3416, 3513 |
| BsmAI | GTCTC | 8 cut(s) | 141, 357, 1601, 1670, 1714, 2047, 3354, 3435 |
| BsmBI | CGTCTC | 2 cut(s) | 141, 357 |
| BsmFI | GGGAC | 4 cut(s) | 1909, 1962, 2790, 3248 |
| BsmI | GAATGC | 1 cut(s) | 1422 |
| BsnI | GGCC | 5 cut(s) | 116, 786, 966, 1947, 2610 |
| Bso31I | GGTCTC | 1 cut(s) | 1601 |
| BsoBI | CYCGRG | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1199, 3198 |
| Bsp13I | TCCGGA | 1 cut(s) | 2101 |
| Bsp1407I | TGTACA | 1 cut(s) | 2643 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1026 |
| Bsp19I | CCATGG | 1 cut(s) | 257 |
| BspACI | CCGC | 7 cut(s) | 85, 136, 312, 470, 1164, 1324, 2340 |
| BspANI | GGCC | 5 cut(s) | 116, 786, 966, 1947, 2610 |
| BspDI | ATCGAT | 1 cut(s) | 345 |
| BspEI | TCCGGA | 1 cut(s) | 2101 |
| BspFNI | CGCG | 2 cut(s) | 174, 312 |
| BspHI | TCATGA | 3 cut(s) | 1275, 1318, 2029 |
| BspLI | GGNNCC | 7 cut(s) | 263, 1536, 1897, 2712, 2826, 3236, 3237 |
| BspPI | GGATC | 9 cut(s) | 341, 643, 933, 1529, 1542, 1915, 2764, 3041, 3117 |
| BspQI | GCTCTTC | 2 cut(s) | 1204, 3375 |
| BspT107I | GGYRCC | 1 cut(s) | 261 |
| BspTNI | GGTCTC | 1 cut(s) | 1601 |
| BsrBI | CCGCTC | 1 cut(s) | 1164 |
| BsrDI | GCAATG | 3 cut(s) | 693, 1341, 3459 |
| BsrFI | RCCGGY | 3 cut(s) | 328, 966, 2252 |
| BsrGI | TGTACA | 1 cut(s) | 2643 |
| BsrI | ACTGG | 4 cut(s) | 1962, 1998, 3309, 3449 |
| BssAI | RCCGGY | 3 cut(s) | 328, 966, 2252 |
| BssECI | CCNNGG | 7 cut(s) | 117, 257, 2369, 2773, 3018, 3158, 3512 |
| BssNAI | GTATAC | 2 cut(s) | 1410, 1820 |
| BssNI | GRCGYC | 1 cut(s) | 3163 |
| BssSI | CACGAG | 1 cut(s) | 3197 |
| BssT1I | CCWWGG | 4 cut(s) | 257, 3018, 3158, 3512 |
| Bst1107I | GTATAC | 2 cut(s) | 1410, 1820 |
| Bst2BI | CACGAG | 1 cut(s) | 3197 |
| Bst4CI | ACNGT | 8 cut(s) | 851, 1225, 1417, 2725, 2781, 3139, 3145, 3530 |
| Bst6I | CTCTTC | 9 cut(s) | 25, 256, 1091, 1204, 1501, 2393, 2453, 3201, 3375 |
| BstACI | GRCGYC | 1 cut(s) | 3163 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 458 |
| BstAUI | TGTACA | 1 cut(s) | 2643 |
| BstC8I | GCNNGC | 6 cut(s) | 310, 1098, 1800, 2014, 3405, 3499 |
| BstDSI | CCRYGG | 1 cut(s) | 257 |
| BstEII | GGTNACC | 1 cut(s) | 2381 |
| BstFNI | CGCG | 2 cut(s) | 174, 312 |
| BstMAI | GTCTC | 8 cut(s) | 141, 357, 1601, 1670, 1714, 2047, 3354, 3435 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 305, 458, 467, 2799, 3523 |
| BstNSI | RCATGY | 4 cut(s) | 1100, 1802, 2170, 2644 |
| BstPI | GGTNACC | 1 cut(s) | 2381 |
| BstSLI | GKGCMC | 1 cut(s) | 3198 |
| BstUI | CGCG | 2 cut(s) | 174, 312 |
| BstV1I | GCAGC | 4 cut(s) | 228, 1884, 3432, 3451 |
| BstV2I | GAAGAC | 2 cut(s) | 84, 692 |
| BstX2I | RGATCY | 4 cut(s) | 463, 1534, 1920, 3033 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 497, 3025 |
| BstYI | RGATCY | 4 cut(s) | 463, 1534, 1920, 3033 |
| BstZ17I | GTATAC | 2 cut(s) | 1410, 1820 |
| Bsu15I | ATCGAT | 1 cut(s) | 345 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3066 |
| BsuI | GTATCC | 1 cut(s) | 3194 |
| BsuRI | GGCC | 5 cut(s) | 116, 786, 966, 1947, 2610 |
| BsuTUI | ATCGAT | 1 cut(s) | 345 |
| BtgI | CCRYGG | 1 cut(s) | 257 |
| BtgZI | GCGATG | 1 cut(s) | 2256 |
| BtrI | CACGTC | 1 cut(s) | 55 |
| BtsI | GCAGTG | 1 cut(s) | 3182 |
| BtsIMutI | CAGTG | 5 cut(s) | 856, 1824, 2947, 3182, 3535 |
| Cac8I | GCNNGC | 6 cut(s) | 310, 1098, 1800, 2014, 3405, 3499 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2779, 3278, 3444 |
| CciI | TCATGA | 3 cut(s) | 1275, 1318, 2029 |
| Cfr10I | RCCGGY | 3 cut(s) | 328, 966, 2252 |
| Cfr13I | GGNCC | 6 cut(s) | 115, 934, 1111, 1896, 3015, 3235 |
| ClaI | ATCGAT | 1 cut(s) | 345 |
| CseI | GACGC | 4 cut(s) | 180, 314, 2434, 3152 |
| CsiI | ACCWGGT | 1 cut(s) | 1845 |
| Csp6I | GTAC | 8 cut(s) | 502, 950, 1154, 1583, 1602, 2644, 2850, 2981 |
| CspAI | ACCGGT | 1 cut(s) | 2252 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1328, 1363 |
| CviQI | GTAC | 8 cut(s) | 502, 950, 1154, 1583, 1602, 2644, 2850, 2981 |
| EaeI | YGGCCR | 2 cut(s) | 964, 2608 |
| Eam1104I | CTCTTC | 9 cut(s) | 25, 256, 1091, 1204, 1501, 2393, 2453, 3201, 3375 |
| EarI | CTCTTC | 9 cut(s) | 25, 256, 1091, 1204, 1501, 2393, 2453, 3201, 3375 |
| Eco130I | CCWWGG | 4 cut(s) | 257, 3018, 3158, 3512 |
| Eco24I | GRGCYC | 1 cut(s) | 1199 |
| Eco31I | GGTCTC | 1 cut(s) | 1601 |
| Eco32I | GATATC | 1 cut(s) | 178 |
| Eco47I | GGWCC | 5 cut(s) | 934, 1111, 1896, 3015, 3235 |
| Eco57I | CTGAAG | 3 cut(s) | 706, 1072, 1644 |
| Eco81I | CCTNAGG | 1 cut(s) | 3066 |
| Eco88I | CYCGRG | 1 cut(s) | 600 |
| Eco91I | GGTNACC | 1 cut(s) | 2381 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1111, 3235 |
| EcoO65I | GGTNACC | 1 cut(s) | 2381 |
| EcoRV | GATATC | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 4 cut(s) | 257, 3018, 3158, 3512 |
| EcoT22I | ATGCAT | 4 cut(s) | 1485, 1699, 1804, 1866 |
| EcoT38I | GRGCYC | 1 cut(s) | 1199 |
| ErhI | CCWWGG | 4 cut(s) | 257, 3018, 3158, 3512 |
| Esp3I | CGTCTC | 2 cut(s) | 141, 357 |
| FaqI | GGGAC | 4 cut(s) | 1909, 1962, 2790, 3248 |
| FauI | CCCGC | 3 cut(s) | 92, 463, 2333 |
| FauNDI | CATATG | 2 cut(s) | 1638, 3250 |
| FbaI | TGATCA | 2 cut(s) | 1315, 2682 |
| FblI | GTMKAC | 2 cut(s) | 1409, 1819 |
| Fnu4HI | GCNGC | 4 cut(s) | 217, 1873, 3421, 3465 |
| FokI | GGATG | 9 cut(s) | 188, 272, 487, 578, 682, 1720, 1767, 2369, 3404 |
| FriOI | GRGCYC | 1 cut(s) | 1199 |
| Fsp4HI | GCNGC | 4 cut(s) | 217, 1873, 3421, 3465 |
| FspBI | CTAG | 5 cut(s) | 396, 788, 1391, 1985, 3314 |
| GluI | GCNGC | 4 cut(s) | 217, 1873, 3421, 3465 |
| GsuI | CTGGAG | 1 cut(s) | 3292 |
| HaeIII | GGCC | 5 cut(s) | 116, 786, 966, 1947, 2610 |
| HgaI | GACGC | 4 cut(s) | 180, 314, 2434, 3152 |
| Hin1I | GRCGYC | 1 cut(s) | 3163 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HphI | GGTGA | 9 cut(s) | 20, 88, 439, 850, 1280, 1852, 1962, 2270, 3137 |
| Hpy99I | CGWCG | 8 cut(s) | 56, 155, 158, 227, 230, 272, 305, 308 |
| HpyCH4III | ACNGT | 8 cut(s) | 851, 1225, 1417, 2725, 2781, 3139, 3145, 3530 |
| HpyCH4IV | ACGT | 1 cut(s) | 54 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 305, 458, 467, 2799, 3523 |
| HpySE526I | ACGT | 1 cut(s) | 54 |
| Hsp92I | GRCGYC | 1 cut(s) | 3163 |
| KflI | GGGWCCC | 1 cut(s) | 3235 |
| Kpn2I | TCCGGA | 1 cut(s) | 2101 |
| Ksp22I | TGATCA | 2 cut(s) | 1315, 2682 |
| LguI | GCTCTTC | 2 cut(s) | 1204, 3375 |
| LmnI | GCTCC | 2 cut(s) | 187, 224 |
| Lsp1109I | GCAGC | 4 cut(s) | 228, 1884, 3432, 3451 |
| LweI | GCATC | 6 cut(s) | 23, 600, 1470, 2085, 2350, 2724 |
| MabI | ACCWGGT | 1 cut(s) | 1845 |
| MaeI | CTAG | 5 cut(s) | 396, 788, 1391, 1985, 3314 |
| MaeII | ACGT | 1 cut(s) | 54 |
| MbiI | CCGCTC | 1 cut(s) | 1164 |
| MfeI | CAATTG | 1 cut(s) | 2037 |
| MflI | RGATCY | 4 cut(s) | 463, 1534, 1920, 3033 |
| MhlI | GDGCHC | 2 cut(s) | 1199, 3198 |
| MlsI | TGGCCA | 1 cut(s) | 2610 |
| MluNI | TGGCCA | 1 cut(s) | 2610 |
| MlyI | GAGTC | 2 cut(s) | 612, 3356 |
| MmeI | TCCRAC | 2 cut(s) | 313, 3084 |
| Mox20I | TGGCCA | 1 cut(s) | 2610 |
| Mph1103I | ATGCAT | 4 cut(s) | 1485, 1699, 1804, 1866 |
| MroI | TCCGGA | 1 cut(s) | 2101 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1257, 3452 |
| MscI | TGGCCA | 1 cut(s) | 2610 |
| Msp20I | TGGCCA | 1 cut(s) | 2610 |
| MspA1I | CMGCKG | 1 cut(s) | 2731 |
| MunI | CAATTG | 1 cut(s) | 2037 |
| Mva1269I | GAATGC | 1 cut(s) | 1422 |
| MvnI | CGCG | 2 cut(s) | 174, 312 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 305, 458, 467, 2799, 3523 |
| NciI | CCSGG | 1 cut(s) | 6 |
| NcoI | CCATGG | 1 cut(s) | 257 |
| NdeI | CATATG | 2 cut(s) | 1638, 3250 |
| NlaIV | GGNNCC | 7 cut(s) | 263, 1536, 1897, 2712, 2826, 3236, 3237 |
| NmuCI | GTSAC | 3 cut(s) | 1496, 2258, 3133 |
| NsiI | ATGCAT | 4 cut(s) | 1485, 1699, 1804, 1866 |
| NspI | RCATGY | 4 cut(s) | 1100, 1802, 2170, 2644 |
| PaeI | GCATGC | 2 cut(s) | 1100, 1802 |
| PaeR7I | CTCGAG | 1 cut(s) | 600 |
| PagI | TCATGA | 3 cut(s) | 1275, 1318, 2029 |
| PciI | ACATGT | 2 cut(s) | 2166, 2640 |
| PciSI | GCTCTTC | 2 cut(s) | 1204, 3375 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 159, 276 |
| PctI | GAATGC | 1 cut(s) | 1422 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1257, 3452 |
| PfoI | TCCNGGA | 1 cut(s) | 976 |
| PinAI | ACCGGT | 1 cut(s) | 2252 |
| PkrI | GCNGC | 4 cut(s) | 218, 1874, 3422, 3466 |
| PleI | GAGTC | 2 cut(s) | 611, 3356 |
| PpsI | GAGTC | 2 cut(s) | 611, 3356 |
| PpuMI | RGGWCCY | 2 cut(s) | 1111, 3235 |
| PscI | ACATGT | 2 cut(s) | 2166, 2640 |
| PshBI | ATTAAT | 1 cut(s) | 2022 |
| PsiI | TTATAA | 2 cut(s) | 1566, 1761 |
| Psp5II | RGGWCCY | 2 cut(s) | 1111, 3235 |
| PspEI | GGTNACC | 1 cut(s) | 2381 |
| PspN4I | GGNNCC | 7 cut(s) | 263, 1536, 1897, 2712, 2826, 3236, 3237 |
| PspPI | GGNCC | 6 cut(s) | 115, 934, 1111, 1896, 3015, 3235 |
| PspPPI | RGGWCCY | 2 cut(s) | 1111, 3235 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2779, 3278, 3444 |
| PsuI | RGATCY | 4 cut(s) | 463, 1534, 1920, 3033 |
| PvuII | CAGCTG | 1 cut(s) | 2731 |
| RsaI | GTAC | 8 cut(s) | 503, 951, 1155, 1584, 1603, 2645, 2851, 2982 |
| RsaNI | GTAC | 8 cut(s) | 502, 950, 1154, 1583, 1602, 2644, 2850, 2981 |
| SapI | GCTCTTC | 2 cut(s) | 1204, 3375 |
| SatI | GCNGC | 4 cut(s) | 217, 1873, 3421, 3465 |
| Sau96I | GGNCC | 6 cut(s) | 115, 934, 1111, 1896, 3015, 3235 |
| ScaI | AGTACT | 2 cut(s) | 951, 1584 |
| SchI | GAGTC | 2 cut(s) | 612, 3356 |
| SduI | GDGCHC | 2 cut(s) | 1199, 3198 |
| SexAI | ACCWGGT | 1 cut(s) | 1845 |
| SfaNI | GCATC | 6 cut(s) | 23, 600, 1470, 2085, 2350, 2724 |
| Sfr274I | CTCGAG | 1 cut(s) | 600 |
| SinI | GGWCC | 5 cut(s) | 934, 1111, 1896, 3015, 3235 |
| SlaI | CTCGAG | 1 cut(s) | 600 |
| SmlI | CTYRAG | 3 cut(s) | 565, 600, 2048 |
| SmoI | CTYRAG | 3 cut(s) | 565, 600, 2048 |
| SphI | GCATGC | 2 cut(s) | 1100, 1802 |
| SsiI | CCGC | 7 cut(s) | 85, 136, 312, 470, 1164, 1324, 2340 |
| SspI | AATATT | 1 cut(s) | 2110 |
| SspMI | CTAG | 5 cut(s) | 396, 788, 1391, 1985, 3314 |
| StyI | CCWWGG | 4 cut(s) | 257, 3018, 3158, 3512 |
| TaaI | ACNGT | 8 cut(s) | 851, 1225, 1417, 2725, 2781, 3139, 3145, 3530 |
| TaiI | ACGT | 1 cut(s) | 57 |
| TaqI | TCGA | 8 cut(s) | 40, 162, 267, 345, 601, 1122, 2861, 2902 |
| TatI | WGTACW | 6 cut(s) | 949, 1153, 1582, 2643, 2849, 2980 |
| TscAI | CASTG | 5 cut(s) | 856, 1831, 2947, 3182, 3535 |
| TseFI | GTSAC | 3 cut(s) | 1496, 2258, 3133 |
| TseI | GCWGC | 4 cut(s) | 216, 1872, 3420, 3464 |
| Tsp45I | GTSAC | 3 cut(s) | 1496, 2258, 3133 |
| TspGWI | ACGGA | 7 cut(s) | 211, 339, 843, 1164, 1476, 1484, 1967 |
| TspRI | CASTG | 5 cut(s) | 856, 1831, 2947, 3182, 3535 |
| VneI | GTGCAC | 1 cut(s) | 3194 |
| VpaK11BI | GGWCC | 5 cut(s) | 934, 1111, 1896, 3015, 3235 |
| VspI | ATTAAT | 1 cut(s) | 2022 |
| XapI | RAATTY | 5 cut(s) | 701, 1216, 2226, 2374, 2898 |
| XbaI | TCTAGA | 1 cut(s) | 1984 |
| XceI | RCATGY | 4 cut(s) | 1100, 1802, 2170, 2644 |
| XhoI | CTCGAG | 1 cut(s) | 600 |
| XmiI | GTMKAC | 2 cut(s) | 1409, 1819 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1257, 3452 |
| XspI | CTAG | 5 cut(s) | 396, 788, 1391, 1985, 3314 |
| ZrmI | AGTACT | 2 cut(s) | 951, 1584 |
| Zsp2I | ATGCAT | 4 cut(s) | 1485, 1699, 1804, 1866 |