Prupe.2G126200_v2.0.a1

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000036
Physical Location & Seq
Forward (+)
18337640 .. 18341261
3622 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G126200.1

Sequence Viewer

Length: 2589 bp
ATGAATTATCGAGCAGAAAATATCAATTTATGGTTACAACATGGATCAACTGACCCTGAGATAGTCGTAATTTATGGGATAAGTGGAATAGGGAAGACAACCATCGCAAAGTTTGTTTATAATTCAAACTATACAAAATTTGAAGGAAGCAGCTTCATTGAAAACATCAAAGAAATTTCACAGCAACCCAATGGCTTGGTGCAAATACAATCACAACTTCTTTCTGAAATTTTGATTGGGAGAAAAGTGAAAATACACTCTGTTAGTAAAGGAATAACTGCGATTGAAGATGCCCTATGGTCTAGAAGGGTTCTTATTGTTCTTGATGATGTGGATCATATGGACCAATTAGAAGCAGTACTTGGGCTCAAATATCGATTTTGTCCAGGAAGTAAAATCATCATAACAACCAAGCGTGCAAAATTGTTAAAAGCTCATCAAGTTACTATGGTGCATGCAGTTGAAACTTTGGATAACAAAGAATCATTGGAGCTCTTAAGTTGGCACGCTTTTGGCCAGGACCATCCGCTTGAAGATTACATAGAATATTCCGAAAAGCTAGTGCACCATTGCGGAGGACTTCCGTTAGCTCTTAAAGTTTTAGGTTCTTCTTTATTGGGGGAAATGATAGATGTATGGAAAAGTGCATTGGACAAGTTAGAAGCTATTCCAAATGGTGAAATCATAATTACGGTACCAACACTAAGAGTAGGCTACGACTCTTTGCAAGATGATGATGACCGAAGACTTTTCCTCCACATTGCTTGTTTCTTGATCGGAAAGGACAAAGATTACATTGTCAAAATACTAGATGGATGTGATTTGTACACAATTGTTGGCATTCAGAATCTCATCGATAGATGTTTAGTGACAATTGATAAATTTGACAAAGTGCAGATGCATGACTTGATTCGTGGAATGGGAAGAGAGATTGTTCGTTTAGAATCAAAGGACCCTTGGAAGCGTAGTAGAGTATGGCGTCATATGGATTCCTTCAAAATCCTGGTAGAAAAGAACGGTACAAGAACAATTGAAGGGCTTGTCCTAGACATGCATATGCTCCGTACAAGCAGTCCCATAAACTCAAACGAGAAAGTATTGGAAACGAATGCATTTGCAAGGATGCAGGAAATAAAATTACTCCATCTTGGTCATGTACAACTTGACGGATGTTATGCAGAATTTTGTACGGGATTAAGATGGCTGTATTGGCTTAAATTTCCTTTGGATTCTATACCCTATAATTTTCCTTTGGGGAGCCTAATTGTTCTTGAAATCCATGACAGCGGCTTGAGACAAGTTTGTCAAGACACAAAATGTCTTCCATTATTGAAGATCCTTGATCTCAGACAGTGTCATAGCCTTACTGAAACTACTGACTTCTCATGTTGCCCCAATCTAGAGAAATTGGTTCTTGTAGACTGTGAAGGCCTGGTTGGTATCAATGAATCCATTGTAAAACTAGAGAGACTTGCTTACTTGAGTATGAAGAATTGCAAAAATGTTAGGATGCTTCCTAAAAACATCTTCACGCTAAAATTGCTTGAAACAATTATTGTATCTGGTTGCAAAAATCTTAGTGAGTTCTCAATTGAGATGTTGTGGAACATGGAGTCTCTGAAAGTGCTTGAGACAGATGGAATTCCAATAGGTGAATTCTGGCCAGGAAGAAGTTTATCTATCTTGAGTTGTTTACAATCCTCCTTAGTAGAGTTGAGTCTTCAGGGGTGCAATCTTTCAGATGATTCCTTTCCTAGGGATTTTAGTAATCCAGCCTCGTTGCGGATACTAAATCTAGGGCACAATCCAATTTGTTGCCTTCCAAATTGTGTCCAAGGATTAACAGGGCTCAATGAACTCTTCTTTTGGGAATGTAGAAGGCTCAAGTCCCTTGTGAGGTTACCAAAAGTAGGCCGACTGCACCTGGAATTTTGTGTATCACTGAAAAAAATAGCAAATCAATCCGATCAGTTTCAAAAACACACTACCTCCTGCTTTCACAACGACAATCTAGTTGAATGGGAGTATAACTACAAGCTAGAACCCATTGGAAGAGTTGATGTAAAGATTATCAACCTTTTGGGCTTGTGCAAGTTGGAATCCATGGCACGGATTCGGCTTCGAAAACCATACCAGTCAAGTAATGGTGACGATCTGAATCCTGTCCAGGGACTGTACGAACGTGGTATATTCAGCACATTTTTTGCAGGGGAGGAGGTTCCTGGCCAGTTCAGCCATAAAAGTGGAGGGTCCTCAATATCTTTTACTGTGCCTTTACTTGATAATTATCACAGAATTGGAGGCTTGAAGGTCTTTGCTGTGTACACAAAACATGCCAATGATTCTCCTTGGGCTTTACCTGGGCCAATGATTACTAGAGTCAGAAATAAGAGCAAGGGCCTCAAGTGGATCTATGCCCCATCACACTGCGGTATTCCAGGTAAAGGAGAAGACATGACATGGTTAAGCCATTGGAATTTGGAGGAGGAGGTTCACTTGGATGGTGGCGATCAAATGGCTGTTTCTGTAATTATGGAACCTTGGCTCCTGGTAAAGGAGTTTGGCATCCAGCTTGTGCAGCAGCTGCAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

863

Amino Acids

97.95

Weight (kDa)

6.47

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AasI GACNNNNNNGTC 1 cut(s) 1302
Acc65I GGTACC 1 cut(s) 694
AccB1I GGYRCC 1 cut(s) 694
AccI GTMKAC 1 cut(s) 1419
AciI CCGC 5 cut(s) 527, 573, 1287, 1783, 2430
AclWI GGATC 4 cut(s) 52, 342, 1330, 2417
AcoI YGGCCR 3 cut(s) 514, 1661, 2224
AcuI CTGAAG 1 cut(s) 1706
AcyI GRCGYC 1 cut(s) 979
AfaI GTAC 9 cut(s) 360, 696, 827, 1021, 1066, 1158, 1189, 2177, 2324
AfiI CCNNNNNNNGG 8 cut(s) 1755, 1782, 1896, 1910, 2109, 2168, 2444, 2554
AflII CTTAAG 1 cut(s) 496
AjuI GAANNNNNNNTTGG 8 cut(s) 219, 251, 345, 377, 632, 664, 1419, 1451
AloI GAACNNNNNNTCC 2 cut(s) 2529, 2561
AluBI AGCT 9 cut(s) 153, 434, 493, 559, 590, 665, 2038, 2572, 2584
AluI AGCT 9 cut(s) 153, 434, 493, 559, 590, 665, 2038, 2572, 2584
Alw21I GWGCWC 2 cut(s) 495, 567
Alw26I GTCTC 4 cut(s) 1288, 1462, 1620, 1625
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 4 cut(s) 52, 342, 1330, 2417
AlwNI CAGNNNCTG 2 cut(s) 2173, 2584
AoxI GGCC 7 cut(s) 514, 1429, 1661, 1912, 2224, 2363, 2398
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 4 cut(s) 150, 2578, 2581, 2584
Asp700I GAANNNNTTC 1 cut(s) 666
Asp718I GGTACC 1 cut(s) 694
AspA2I CCTAGG 1 cut(s) 1754
AspS9I GGNCC 6 cut(s) 343, 520, 952, 2250, 2363, 2398
AsuHPI GGTGA 3 cut(s) 689, 1664, 2159
AsuII TTCGAA 1 cut(s) 2122
AvaII GGWCC 4 cut(s) 343, 520, 952, 2250
AvrII CCTAGG 1 cut(s) 1754
BaeGI GKGCMC 2 cut(s) 567, 1803
BalI TGGCCA 3 cut(s) 516, 1663, 2226
BanI GGYRCC 1 cut(s) 694
BanII GRGCYC 3 cut(s) 369, 495, 1851
BbsI GAAGAC 5 cut(s) 101, 751, 1313, 1712, 2457
Bbv12I GWGCWC 2 cut(s) 495, 567
BbvI GCAGC 2 cut(s) 162, 2571
BccI CCATC 8 cut(s) 110, 531, 806, 1152, 1194, 1631, 2428, 2495
BciVI GTATCC 1 cut(s) 1779
BcoDI GTCTC 4 cut(s) 1288, 1462, 1620, 1625
BfrI CTTAAG 1 cut(s) 496
BfuI GTATCC 1 cut(s) 1779
BisI GCNGC 5 cut(s) 151, 1288, 2579, 2582, 2585
BlnI CCTAGG 1 cut(s) 1754
BlsI GCNGC 5 cut(s) 152, 1289, 2580, 2583, 2586
BmcAI AGTACT 1 cut(s) 360
Bme18I GGWCC 4 cut(s) 343, 520, 952, 2250
BmgT120I GGNCC 6 cut(s) 343, 520, 952, 2250, 2363, 2398
BmiI GGNNCC 7 cut(s) 696, 954, 1259, 2220, 2251, 2538, 2546
BmsI GCATC 5 cut(s) 280, 888, 1113, 1500, 2574
BpiI GAAGAC 5 cut(s) 101, 751, 1313, 1712, 2457
Bpu14I TTCGAA 1 cut(s) 2122
BpuEI CTTGAG 6 cut(s) 1312, 1501, 1649, 1705, 1868, 2387
Bsa29I ATCGAT 2 cut(s) 376, 855
BsaBI GATNNNNATC 3 cut(s) 333, 2157, 2286
BsaHI GRCGYC 1 cut(s) 979
BsaJI CCNNGG 8 cut(s) 956, 1754, 1834, 2103, 2167, 2348, 2360, 2540
BsaXI ACNNNNNCTCC 6 cut(s) 738, 768, 1973, 2003, 2529, 2559
Bsc4I CCNNNNNNNGG 8 cut(s) 1755, 1782, 1896, 1910, 2109, 2168, 2444, 2554
Bse1I ACTGG 2 cut(s) 2134, 2227
Bse3DI GCAATG 2 cut(s) 568, 759
Bse8I GATNNNNATC 3 cut(s) 333, 2157, 2286
BseCI ATCGAT 2 cut(s) 376, 855
BseDI CCNNGG 8 cut(s) 956, 1754, 1834, 2103, 2167, 2348, 2360, 2540
BseGI GGATG 7 cut(s) 523, 821, 1128, 1175, 1515, 2506, 2565
BseJI GATNNNNATC 3 cut(s) 333, 2157, 2286
BseLI CCNNNNNNNGG 8 cut(s) 1755, 1782, 1896, 1910, 2109, 2168, 2444, 2554
BseMI GCAATG 2 cut(s) 568, 759
BseMII CTCAG 2 cut(s) 48, 1360
BseNI ACTGG 2 cut(s) 2134, 2227
BseRI GAGGAG 3 cut(s) 2228, 2498, 2501
BseSI GKGCMC 2 cut(s) 567, 1803
BseXI GCAGC 2 cut(s) 162, 2571
BsgI GTGCAG 2 cut(s) 914, 1904
BshFI GGCC 7 cut(s) 516, 1431, 1663, 1914, 2226, 2365, 2400
BshNI GGYRCC 1 cut(s) 694
BshVI ATCGAT 2 cut(s) 376, 855
BsiHKAI GWGCWC 2 cut(s) 495, 567
BslFI GGGAC 3 cut(s) 1059, 1873, 2184
BslI CCNNNNNNNGG 8 cut(s) 1755, 1782, 1896, 1910, 2109, 2168, 2444, 2554
BsmAI GTCTC 4 cut(s) 1288, 1462, 1620, 1625
BsmFI GGGAC 3 cut(s) 1059, 1873, 2184
BsmI GAATGC 2 cut(s) 840, 1114
BsnI GGCC 7 cut(s) 516, 1431, 1663, 1914, 2226, 2365, 2400
Bsp119I TTCGAA 1 cut(s) 2122
Bsp1286I GDGCHC 5 cut(s) 369, 495, 567, 1803, 1851
Bsp1407I TGTACA 3 cut(s) 825, 1156, 2322
Bsp143I GATC 9 cut(s) 44, 334, 774, 1335, 1342, 1966, 2152, 2409, 2509
Bsp19I CCATGG 1 cut(s) 2103
BspACI CCGC 5 cut(s) 527, 573, 1287, 1783, 2430
BspANI GGCC 7 cut(s) 516, 1431, 1663, 1914, 2226, 2365, 2400
BspCNI CTCAG 2 cut(s) 49, 1359
BspDI ATCGAT 2 cut(s) 376, 855
BspLI GGNNCC 7 cut(s) 696, 954, 1259, 2220, 2251, 2538, 2546
BspPI GGATC 4 cut(s) 52, 342, 1330, 2417
BspT104I TTCGAA 1 cut(s) 2122
BspT107I GGYRCC 1 cut(s) 694
BspTI CTTAAG 1 cut(s) 496
BsrDI GCAATG 2 cut(s) 568, 759
BsrGI TGTACA 3 cut(s) 825, 1156, 2322
BsrI ACTGG 2 cut(s) 2134, 2227
BssECI CCNNGG 8 cut(s) 956, 1754, 1834, 2103, 2167, 2348, 2360, 2540
BssMI GATC 9 cut(s) 44, 334, 774, 1335, 1342, 1966, 2152, 2409, 2509
BssNI GRCGYC 1 cut(s) 979
BssT1I CCWWGG 6 cut(s) 956, 1754, 1834, 2103, 2348, 2540
Bst4CI ACNGT 6 cut(s) 694, 1019, 1353, 1424, 2175, 2269
Bst6I CTCTTC 3 cut(s) 919, 1865, 2047
BstACI GRCGYC 1 cut(s) 979
BstAFI CTTAAG 1 cut(s) 496
BstAPI GCANNNNNTGC 1 cut(s) 2584
BstAUI TGTACA 3 cut(s) 825, 1156, 2322
BstBI TTCGAA 1 cut(s) 2122
BstC8I GCNNGC 3 cut(s) 417, 456, 507
BstDEI CTNAG 5 cut(s) 57, 704, 1346, 1577, 1705
BstDSI CCRYGG 1 cut(s) 2103
BstEII GGTNACC 1 cut(s) 1899
BstENI CCTNNNNNAGG 2 cut(s) 1753, 2552
BstF5I GGATG 7 cut(s) 523, 821, 1128, 1175, 1515, 2506, 2565
BstKTI GATC 9 cut(s) 47, 337, 777, 1338, 1345, 1969, 2155, 2412, 2512
BstMAI GTCTC 4 cut(s) 1288, 1462, 1620, 1625
BstMBI GATC 9 cut(s) 44, 334, 774, 1335, 1342, 1966, 2152, 2409, 2509
BstMWI GCNNNNNNNGC 5 cut(s) 1210, 1540, 2232, 2578, 2584
BstNSI RCATGY 3 cut(s) 458, 1054, 2336
BstPI GGTNACC 1 cut(s) 1899
BstSLI GKGCMC 2 cut(s) 567, 1803
BstV1I GCAGC 2 cut(s) 162, 2571
BstV2I GAAGAC 5 cut(s) 101, 751, 1313, 1712, 2457
BstX2I RGATCY 2 cut(s) 1335, 2409
BstXI CCANNNNNNTGG 2 cut(s) 196, 2243
BstYI RGATCY 2 cut(s) 1335, 2409
Bsu15I ATCGAT 2 cut(s) 376, 855
BsuI GTATCC 1 cut(s) 1779
BsuRI GGCC 7 cut(s) 516, 1431, 1663, 1914, 2226, 2365, 2400
BsuTUI ATCGAT 2 cut(s) 376, 855
BtgI CCRYGG 1 cut(s) 2103
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 7 cut(s) 523, 821, 1128, 1175, 1515, 2506, 2565
BtsI GCAGTG 1 cut(s) 2425
BtsIMutI CAGTG 3 cut(s) 1358, 1940, 2425
Cac8I GCNNGC 3 cut(s) 417, 456, 507
CaiI CAGNNNCTG 2 cut(s) 2173, 2584
Cfr13I GGNCC 6 cut(s) 343, 520, 952, 2250, 2363, 2398
ClaI ATCGAT 2 cut(s) 376, 855
CseI GACGC 1 cut(s) 968
Csp6I GTAC 9 cut(s) 359, 695, 826, 1020, 1065, 1157, 1188, 2176, 2323
CspCI CAANNNNNGTGG 2 cut(s) 746, 781
CviQI GTAC 9 cut(s) 359, 695, 826, 1020, 1065, 1157, 1188, 2176, 2323
DdeI CTNAG 5 cut(s) 57, 704, 1346, 1577, 1705
DpnI GATC 9 cut(s) 46, 336, 776, 1337, 1344, 1968, 2154, 2411, 2511
DpnII GATC 9 cut(s) 44, 334, 774, 1335, 1342, 1966, 2152, 2409, 2509
DrdI GACNNNNNNGTC 1 cut(s) 1302
DseDI GACNNNNNNGTC 1 cut(s) 1302
EaeI YGGCCR 3 cut(s) 514, 1661, 2224
Eam1104I CTCTTC 3 cut(s) 919, 1865, 2047
EarI CTCTTC 3 cut(s) 919, 1865, 2047
Ecl136II GAGCTC 1 cut(s) 493
Eco130I CCWWGG 6 cut(s) 956, 1754, 1834, 2103, 2348, 2540
Eco147I AGGCCT 1 cut(s) 1431
Eco24I GRGCYC 3 cut(s) 369, 495, 1851
Eco47I GGWCC 4 cut(s) 343, 520, 952, 2250
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 1706
Eco91I GGTNACC 1 cut(s) 1899
EcoICRI GAGCTC 1 cut(s) 493
EcoNI CCTNNNNNAGG 2 cut(s) 1753, 2552
EcoO109I RGGNCCY 3 cut(s) 952, 2250, 2398
EcoO65I GGTNACC 1 cut(s) 1899
EcoRI GAATTC 2 cut(s) 1641, 1655
EcoT14I CCWWGG 6 cut(s) 956, 1754, 1834, 2103, 2348, 2540
EcoT22I ATGCAT 3 cut(s) 903, 1056, 1114
EcoT38I GRGCYC 3 cut(s) 369, 495, 1851
ErhI CCWWGG 6 cut(s) 956, 1754, 1834, 2103, 2348, 2540
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 3 cut(s) 1059, 1873, 2184
FauNDI CATATG 3 cut(s) 339, 984, 1056
FblI GTMKAC 1 cut(s) 1419
Fnu4HI GCNGC 5 cut(s) 151, 1288, 2579, 2582, 2585
FokI GGATG 7 cut(s) 510, 828, 1135, 1182, 1522, 2513, 2552
FriOI GRGCYC 3 cut(s) 369, 495, 1851
Fsp4HI GCNGC 5 cut(s) 151, 1288, 2579, 2582, 2585
GluI GCNGC 5 cut(s) 151, 1288, 2579, 2582, 2585
HaeIII GGCC 7 cut(s) 516, 1431, 1663, 1914, 2226, 2365, 2400
HgaI GACGC 1 cut(s) 968
Hin1I GRCGYC 1 cut(s) 979
HphI GGTGA 3 cut(s) 689, 1664, 2159
Hpy166II GTNNAC 7 cut(s) 565, 828, 1420, 1694, 2323, 2325, 2494
Hpy188III TCNNGA 7 cut(s) 303, 323, 772, 1271, 1307, 1400, 1684
Hpy8I GTNNAC 7 cut(s) 565, 828, 1420, 1694, 2323, 2325, 2494
HpyAV CCTTC 8 cut(s) 137, 300, 1003, 1028, 1421, 1829, 1872, 2302
HpyCH4III ACNGT 6 cut(s) 694, 1019, 1353, 1424, 2175, 2269
HpyCH4IV ACGT 1 cut(s) 2182
HpyF10VI GCNNNNNNNGC 5 cut(s) 1210, 1540, 2232, 2578, 2584
HpyF3I CTNAG 5 cut(s) 57, 704, 1346, 1577, 1705
HpySE526I ACGT 1 cut(s) 2182
Hsp92I GRCGYC 1 cut(s) 979
KpnI GGTACC 1 cut(s) 698
Kzo9I GATC 9 cut(s) 44, 334, 774, 1335, 1342, 1966, 2152, 2409, 2509
LmnI GCTCC 4 cut(s) 490, 1065, 1257, 2550
Lsp1109I GCAGC 2 cut(s) 162, 2571
LweI GCATC 5 cut(s) 280, 888, 1113, 1500, 2574
MaeII ACGT 1 cut(s) 2182
MaeIII GTNAC 5 cut(s) 33, 442, 868, 1899, 2147
MalI GATC 9 cut(s) 46, 336, 776, 1337, 1344, 1968, 2154, 2411, 2511
MboI GATC 9 cut(s) 44, 334, 774, 1335, 1342, 1966, 2152, 2409, 2509
MfeI CAATTG 4 cut(s) 831, 873, 1029, 1590
MflI RGATCY 2 cut(s) 1335, 2409
MhlI GDGCHC 5 cut(s) 369, 495, 567, 1803, 1851
MlsI TGGCCA 3 cut(s) 516, 1663, 2226
MluNI TGGCCA 3 cut(s) 516, 1663, 2226
MlyI GAGTC 4 cut(s) 713, 1622, 1726, 2388
MmeI TCCRAC 1 cut(s) 2076
Mox20I TGGCCA 3 cut(s) 516, 1663, 2226
Mph1103I ATGCAT 3 cut(s) 903, 1056, 1114
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 3 cut(s) 516, 1663, 2226
MseI TTAA 7 cut(s) 428, 497, 594, 1196, 1215, 1841, 2465
MslI CAYNNNNRTG 4 cut(s) 1055, 2241, 2337, 2499
Msp20I TGGCCA 3 cut(s) 516, 1663, 2226
MspA1I CMGCKG 2 cut(s) 1287, 2584
MspCI CTTAAG 1 cut(s) 496
MunI CAATTG 4 cut(s) 831, 873, 1029, 1590
Mva1269I GAATGC 2 cut(s) 840, 1114
MwoI GCNNNNNNNGC 5 cut(s) 1210, 1540, 2232, 2578, 2584
NcoI CCATGG 1 cut(s) 2103
NdeI CATATG 3 cut(s) 339, 984, 1056
NdeII GATC 9 cut(s) 44, 334, 774, 1335, 1342, 1966, 2152, 2409, 2509
NlaIV GGNNCC 7 cut(s) 696, 954, 1259, 2220, 2251, 2538, 2546
NmuCI GTSAC 2 cut(s) 868, 2147
NsiI ATGCAT 3 cut(s) 903, 1056, 1114
NspI RCATGY 3 cut(s) 458, 1054, 2336
NspV TTCGAA 1 cut(s) 2122
PaeI GCATGC 1 cut(s) 458
PceI AGGCCT 1 cut(s) 1431
PctI GAATGC 2 cut(s) 840, 1114
PdmI GAANNNNTTC 1 cut(s) 666
PflFI GACNNNGTC 1 cut(s) 1353
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 5 cut(s) 152, 1289, 2580, 2583, 2586
PleI GAGTC 4 cut(s) 713, 1621, 1725, 2387
PpsI GAGTC 4 cut(s) 713, 1621, 1725, 2387
PpuMI RGGWCCY 2 cut(s) 952, 2250
PsiI TTATAA 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 495
Psp5II RGGWCCY 2 cut(s) 952, 2250
PspEI GGTNACC 1 cut(s) 1899
PspN4I GGNNCC 7 cut(s) 696, 954, 1259, 2220, 2251, 2538, 2546
PspPI GGNCC 6 cut(s) 343, 520, 952, 2250, 2363, 2398
PspPPI RGGWCCY 2 cut(s) 952, 2250
PstNI CAGNNNCTG 2 cut(s) 2173, 2584
PsuI RGATCY 2 cut(s) 1335, 2409
PsyI GACNNNGTC 1 cut(s) 1353
PvuII CAGCTG 1 cut(s) 2584
RsaI GTAC 9 cut(s) 360, 696, 827, 1021, 1066, 1158, 1189, 2177, 2324
RsaNI GTAC 9 cut(s) 359, 695, 826, 1020, 1065, 1157, 1188, 2176, 2323
RseI CAYNNNNRTG 4 cut(s) 1055, 2241, 2337, 2499
SacI GAGCTC 1 cut(s) 495
SaqAI TTAA 7 cut(s) 428, 497, 594, 1196, 1215, 1841, 2465
SatI GCNGC 5 cut(s) 151, 1288, 2579, 2582, 2585
Sau3AI GATC 9 cut(s) 44, 334, 774, 1335, 1342, 1966, 2152, 2409, 2509
Sau96I GGNCC 6 cut(s) 343, 520, 952, 2250, 2363, 2398
ScaI AGTACT 1 cut(s) 360
SchI GAGTC 4 cut(s) 713, 1622, 1726, 2388
SduI GDGCHC 5 cut(s) 369, 495, 567, 1803, 1851
SfaNI GCATC 5 cut(s) 280, 888, 1113, 1500, 2574
SfuI TTCGAA 1 cut(s) 2122
SinI GGWCC 4 cut(s) 343, 520, 952, 2250
SmiMI CAYNNNNRTG 4 cut(s) 1055, 2241, 2337, 2499
SmlI CTYRAG 7 cut(s) 496, 1291, 1480, 1628, 1684, 1883, 2402
SmoI CTYRAG 7 cut(s) 496, 1291, 1480, 1628, 1684, 1883, 2402
SphI GCATGC 1 cut(s) 458
SseBI AGGCCT 1 cut(s) 1431
SsiI CCGC 5 cut(s) 527, 573, 1287, 1783, 2430
SspI AATATT 1 cut(s) 548
SstI GAGCTC 1 cut(s) 495
StuI AGGCCT 1 cut(s) 1431
StyI CCWWGG 6 cut(s) 956, 1754, 1834, 2103, 2348, 2540
TaaI ACNGT 6 cut(s) 694, 1019, 1353, 1424, 2175, 2269
TaiI ACGT 1 cut(s) 2185
TaqI TCGA 4 cut(s) 10, 376, 855, 2122
TaqII GACCGA 1 cut(s) 756
TatI WGTACW 4 cut(s) 358, 825, 1156, 2322
TauI GCSGC 1 cut(s) 1290
Tru1I TTAA 7 cut(s) 428, 497, 594, 1196, 1215, 1841, 2465
Tru9I TTAA 7 cut(s) 428, 497, 594, 1196, 1215, 1841, 2465
TscAI CASTG 3 cut(s) 1358, 1947, 2432
TseFI GTSAC 2 cut(s) 868, 2147
TseI GCWGC 4 cut(s) 150, 2578, 2581, 2584
Tsp45I GTSAC 2 cut(s) 868, 2147
TspDTI ATGAA 5 cut(s) 17, 145, 1461, 1502, 1869
TspGWI ACGGA 4 cut(s) 573, 1052, 1182, 2125
TspRI CASTG 3 cut(s) 1358, 1947, 2432
Tth111I GACNNNGTC 1 cut(s) 1353
Vha464I CTTAAG 1 cut(s) 496
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 4 cut(s) 343, 520, 952, 2250
XagI CCTNNNNNAGG 2 cut(s) 1753, 2552
XbaI TCTAGA 2 cut(s) 302, 1399
XceI RCATGY 3 cut(s) 458, 1054, 2336
XcmI CCANNNNNNNNNTGG 1 cut(s) 2141
XmaJI CCTAGG 1 cut(s) 1754
XmiI GTMKAC 1 cut(s) 1419
XmnI GAANNNNTTC 1 cut(s) 666
ZrmI AGTACT 1 cut(s) 360
Zsp2I ATGCAT 3 cut(s) 903, 1056, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.