TMV resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 63 - 133 | 3.4e-18 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 798 |
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AclWI | GGATC | 1 cut(s) | 781 |
| AcsI | RAATTY | 2 cut(s) | 668, 767 |
| AcuI | CTGAAG | 1 cut(s) | 905 |
| AcyI | GRCGYC | 2 cut(s) | 430, 795 |
| AfaI | GTAC | 3 cut(s) | 472, 609, 929 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 999 |
| AflII | CTTAAG | 1 cut(s) | 986 |
| AflIII | ACRYGT | 1 cut(s) | 975 |
| AgsI | TTSAA | 4 cut(s) | 296, 668, 784, 934 |
| AjnI | CCWGG | 1 cut(s) | 495 |
| AluBI | AGCT | 9 cut(s) | 19, 50, 118, 165, 406, 741, 912, 964, 1041 |
| AluI | AGCT | 9 cut(s) | 19, 50, 118, 165, 406, 741, 912, 964, 1041 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| Alw26I | GTCTC | 2 cut(s) | 739, 913 |
| AlwI | GGATC | 1 cut(s) | 781 |
| AoxI | GGCC | 2 cut(s) | 811, 990 |
| ApoI | RAATTY | 2 cut(s) | 668, 767 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 200, 384, 861 |
| AspLEI | GCGC | 1 cut(s) | 432 |
| AspS9I | GGNCC | 1 cut(s) | 991 |
| AsuHPI | GGTGA | 4 cut(s) | 149, 331, 355, 1021 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BauI | CACGAG | 1 cut(s) | 923 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BccI | CCATC | 6 cut(s) | 128, 257, 603, 611, 645, 784 |
| BceAI | ACGGC | 1 cut(s) | 352 |
| BciT130I | CCWGG | 1 cut(s) | 497 |
| BcoDI | GTCTC | 2 cut(s) | 739, 913 |
| BfaI | CTAG | 2 cut(s) | 20, 851 |
| BfmI | CTRYAG | 1 cut(s) | 639 |
| BfoI | RGCGCY | 1 cut(s) | 433 |
| BfrI | CTTAAG | 1 cut(s) | 986 |
| Bme1390I | CCNGG | 1 cut(s) | 497 |
| BmgT120I | GGNCC | 1 cut(s) | 991 |
| BmiI | GGNNCC | 2 cut(s) | 431, 993 |
| BmrFI | CCNGG | 1 cut(s) | 497 |
| BmsI | GCATC | 1 cut(s) | 302 |
| BpuEI | CTTGAG | 2 cut(s) | 428, 763 |
| BsaHI | GRCGYC | 2 cut(s) | 430, 795 |
| BsaJI | CCNNGG | 1 cut(s) | 484 |
| BsaWI | WCCGGW | 1 cut(s) | 192 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 576, 606 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 999 |
| Bse1I | ACTGG | 1 cut(s) | 618 |
| Bse3DI | GCAATG | 1 cut(s) | 210 |
| BseBI | CCWGG | 1 cut(s) | 497 |
| BseDI | CCNNGG | 1 cut(s) | 484 |
| BseGI | GGATG | 4 cut(s) | 272, 579, 622, 626 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 999 |
| BseMI | GCAATG | 1 cut(s) | 210 |
| BseNI | ACTGG | 1 cut(s) | 618 |
| BshFI | GGCC | 2 cut(s) | 813, 992 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BsiSI | CCGG | 1 cut(s) | 193 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 999 |
| BsmAI | GTCTC | 2 cut(s) | 739, 913 |
| BsmI | GAATGC | 1 cut(s) | 291 |
| BsnI | GGCC | 2 cut(s) | 813, 992 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 1 cut(s) | 786 |
| BspANI | GGCC | 2 cut(s) | 813, 992 |
| BspHI | TCATGA | 1 cut(s) | 895 |
| BspLI | GGNNCC | 2 cut(s) | 431, 993 |
| BspPI | GGATC | 1 cut(s) | 781 |
| BspQI | GCTCTTC | 1 cut(s) | 396 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTI | CTTAAG | 1 cut(s) | 986 |
| BsrDI | GCAATG | 1 cut(s) | 210 |
| BsrI | ACTGG | 1 cut(s) | 618 |
| BssECI | CCNNGG | 1 cut(s) | 484 |
| BssMI | GATC | 1 cut(s) | 786 |
| BssNI | GRCGYC | 2 cut(s) | 430, 795 |
| BssSI | CACGAG | 1 cut(s) | 923 |
| BssT1I | CCWWGG | 1 cut(s) | 484 |
| Bst2BI | CACGAG | 1 cut(s) | 923 |
| Bst2UI | CCWGG | 1 cut(s) | 497 |
| Bst4CI | ACNGT | 3 cut(s) | 524, 737, 1030 |
| Bst6I | CTCTTC | 2 cut(s) | 370, 396 |
| BstACI | GRCGYC | 2 cut(s) | 430, 795 |
| BstAFI | CTTAAG | 1 cut(s) | 986 |
| BstC8I | GCNNGC | 1 cut(s) | 983 |
| BstDEI | CTNAG | 4 cut(s) | 155, 599, 815, 956 |
| BstF5I | GGATG | 4 cut(s) | 272, 579, 622, 626 |
| BstH2I | RGCGCY | 1 cut(s) | 433 |
| BstHHI | GCGC | 1 cut(s) | 432 |
| BstKTI | GATC | 1 cut(s) | 789 |
| BstMAI | GTCTC | 2 cut(s) | 739, 913 |
| BstMBI | GATC | 1 cut(s) | 786 |
| BstNI | CCWGG | 1 cut(s) | 497 |
| BstNSI | RCATGY | 2 cut(s) | 979, 985 |
| BstSCI | CCNGG | 1 cut(s) | 495 |
| BstSFI | CTRYAG | 1 cut(s) | 639 |
| BstX2I | RGATCY | 1 cut(s) | 786 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 809 |
| BstYI | RGATCY | 1 cut(s) | 786 |
| BsuRI | GGCC | 2 cut(s) | 813, 992 |
| BtsCI | GGATG | 4 cut(s) | 272, 579, 622, 626 |
| BtsIMutI | CAGTG | 1 cut(s) | 1026 |
| Cac8I | GCNNGC | 1 cut(s) | 983 |
| CciI | TCATGA | 1 cut(s) | 895 |
| CfoI | GCGC | 1 cut(s) | 432 |
| Cfr13I | GGNCC | 1 cut(s) | 991 |
| Csp6I | GTAC | 3 cut(s) | 471, 608, 928 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 197, 232 |
| CviAII | CATG | 8 cut(s) | 188, 353, 358, 605, 809, 896, 976, 982 |
| CviQI | GTAC | 3 cut(s) | 471, 608, 928 |
| DdeI | CTNAG | 4 cut(s) | 155, 599, 815, 956 |
| DinI | GGCGCC | 1 cut(s) | 431 |
| DpnI | GATC | 1 cut(s) | 788 |
| DpnII | GATC | 1 cut(s) | 786 |
| DraI | TTTAAA | 2 cut(s) | 177, 1017 |
| Eam1104I | CTCTTC | 2 cut(s) | 370, 396 |
| EarI | CTCTTC | 2 cut(s) | 370, 396 |
| Eco130I | CCWWGG | 1 cut(s) | 484 |
| Eco57I | CTGAAG | 1 cut(s) | 905 |
| EcoO109I | RGGNCCY | 1 cut(s) | 991 |
| EcoRII | CCWGG | 1 cut(s) | 495 |
| EcoT14I | CCWWGG | 1 cut(s) | 484 |
| EcoT22I | ATGCAT | 2 cut(s) | 354, 565 |
| EgeI | GGCGCC | 1 cut(s) | 431 |
| EheI | GGCGCC | 1 cut(s) | 431 |
| ErhI | CCWWGG | 1 cut(s) | 484 |
| FaeI | CATG | 8 cut(s) | 191, 356, 361, 608, 812, 899, 979, 985 |
| FatI | CATG | 8 cut(s) | 187, 352, 357, 604, 808, 895, 975, 981 |
| FokI | GGATG | 4 cut(s) | 279, 586, 629, 633 |
| FspBI | CTAG | 2 cut(s) | 20, 851 |
| GlaI | GCGC | 1 cut(s) | 431 |
| HaeII | RGCGCY | 1 cut(s) | 433 |
| HaeIII | GGCC | 2 cut(s) | 813, 992 |
| HapII | CCGG | 1 cut(s) | 193 |
| HhaI | GCGC | 1 cut(s) | 432 |
| Hin1I | GRCGYC | 2 cut(s) | 430, 795 |
| Hin1II | CATG | 8 cut(s) | 191, 356, 361, 608, 812, 899, 979, 985 |
| Hin6I | GCGC | 1 cut(s) | 430 |
| HinP1I | GCGC | 1 cut(s) | 430 |
| HindIII | AAGCTT | 2 cut(s) | 910, 962 |
| HinfI | GANTC | 8 cut(s) | 361, 395, 440, 680, 862, 899, 921, 952 |
| HpaII | CCGG | 1 cut(s) | 193 |
| HphI | GGTGA | 4 cut(s) | 149, 331, 355, 1021 |
| Hpy166II | GTNNAC | 1 cut(s) | 928 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 969 |
| Hpy188III | TCNNGA | 4 cut(s) | 131, 722, 851, 896 |
| Hpy8I | GTNNAC | 1 cut(s) | 928 |
| Hpy99I | CGWCG | 1 cut(s) | 38 |
| HpyAV | CCTTC | 1 cut(s) | 225 |
| HpyCH4III | ACNGT | 3 cut(s) | 524, 737, 1030 |
| HpyCH4IV | ACGT | 3 cut(s) | 415, 711, 795 |
| HpyF3I | CTNAG | 4 cut(s) | 155, 599, 815, 956 |
| HpySE526I | ACGT | 3 cut(s) | 415, 711, 795 |
| Hsp92I | GRCGYC | 2 cut(s) | 430, 795 |
| Hsp92II | CATG | 8 cut(s) | 191, 356, 361, 608, 812, 899, 979, 985 |
| HspAI | GCGC | 1 cut(s) | 430 |
| KasI | GGCGCC | 1 cut(s) | 429 |
| Kzo9I | GATC | 1 cut(s) | 786 |
| LguI | GCTCTTC | 1 cut(s) | 396 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| LpnPI | CCDG | 9 cut(s) | 63, 144, 206, 482, 509, 599, 627, 707, 896 |
| LweI | GCATC | 1 cut(s) | 302 |
| MaeI | CTAG | 2 cut(s) | 20, 851 |
| MaeII | ACGT | 3 cut(s) | 415, 711, 795 |
| MaeIII | GTNAC | 1 cut(s) | 319 |
| MalI | GATC | 1 cut(s) | 788 |
| MboI | GATC | 1 cut(s) | 786 |
| MboII | GAAGA | 7 cut(s) | 60, 387, 413, 764, 796, 898, 982 |
| MfeI | CAATTG | 1 cut(s) | 690 |
| MflI | RGATCY | 1 cut(s) | 786 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 7 cut(s) | 197, 381, 580, 668, 690, 714, 767 |
| Mly113I | GGCGCC | 1 cut(s) | 430 |
| MlyI | GAGTC | 1 cut(s) | 915 |
| MnlI | CCTC | 5 cut(s) | 215, 403, 450, 847, 1000 |
| Mph1103I | ATGCAT | 2 cut(s) | 354, 565 |
| MroXI | GAANNNNTTC | 3 cut(s) | 200, 384, 861 |
| MseI | TTAA | 4 cut(s) | 176, 647, 987, 1016 |
| MslI | CAYNNNNRTG | 2 cut(s) | 807, 980 |
| MspCI | CTTAAG | 1 cut(s) | 986 |
| MspI | CCGG | 1 cut(s) | 193 |
| MspR9I | CCNGG | 1 cut(s) | 497 |
| MunI | CAATTG | 1 cut(s) | 690 |
| Mva1269I | GAATGC | 1 cut(s) | 291 |
| MvaI | CCWGG | 1 cut(s) | 497 |
| NarI | GGCGCC | 1 cut(s) | 430 |
| NdeII | GATC | 1 cut(s) | 786 |
| NlaIII | CATG | 8 cut(s) | 191, 356, 361, 608, 812, 899, 979, 985 |
| NlaIV | GGNNCC | 2 cut(s) | 431, 993 |
| NmuCI | GTSAC | 1 cut(s) | 319 |
| NsiI | ATGCAT | 2 cut(s) | 354, 565 |
| NspI | RCATGY | 2 cut(s) | 979, 985 |
| PaeI | GCATGC | 1 cut(s) | 985 |
| PagI | TCATGA | 1 cut(s) | 895 |
| PciI | ACATGT | 1 cut(s) | 975 |
| PciSI | GCTCTTC | 1 cut(s) | 396 |
| PctI | GAATGC | 1 cut(s) | 291 |
| PdmI | GAANNNNTTC | 3 cut(s) | 200, 384, 861 |
| PfeI | GAWTC | 7 cut(s) | 361, 395, 440, 680, 862, 899, 952 |
| PfoI | TCCNGGA | 1 cut(s) | 495 |
| PleI | GAGTC | 1 cut(s) | 915 |
| PluTI | GGCGCC | 1 cut(s) | 433 |
| PpsI | GAGTC | 1 cut(s) | 915 |
| PscI | ACATGT | 1 cut(s) | 975 |
| Psp6I | CCWGG | 1 cut(s) | 495 |
| PspGI | CCWGG | 1 cut(s) | 495 |
| PspN4I | GGNNCC | 2 cut(s) | 431, 993 |
| PspPI | GGNCC | 1 cut(s) | 991 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 227, 259 |
| PsuI | RGATCY | 1 cut(s) | 786 |
| RsaI | GTAC | 3 cut(s) | 472, 609, 929 |
| RsaNI | GTAC | 3 cut(s) | 471, 608, 928 |
| RseI | CAYNNNNRTG | 2 cut(s) | 807, 980 |
| SapI | GCTCTTC | 1 cut(s) | 396 |
| SaqAI | TTAA | 4 cut(s) | 176, 647, 987, 1016 |
| Sau3AI | GATC | 1 cut(s) | 786 |
| Sau96I | GGNCC | 1 cut(s) | 991 |
| SchI | GAGTC | 1 cut(s) | 915 |
| ScrFI | CCNGG | 1 cut(s) | 497 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SfaNI | GCATC | 1 cut(s) | 302 |
| SfcI | CTRYAG | 1 cut(s) | 639 |
| SfoI | GGCGCC | 1 cut(s) | 431 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 807, 980 |
| SmlI | CTYRAG | 3 cut(s) | 407, 742, 986 |
| SmoI | CTYRAG | 3 cut(s) | 407, 742, 986 |
| SphI | GCATGC | 1 cut(s) | 985 |
| Sse9I | AATT | 7 cut(s) | 197, 381, 580, 668, 690, 714, 767 |
| SspDI | GGCGCC | 1 cut(s) | 429 |
| SspI | AATATT | 1 cut(s) | 258 |
| SspMI | CTAG | 2 cut(s) | 20, 851 |
| StyD4I | CCNGG | 1 cut(s) | 495 |
| StyI | CCWWGG | 1 cut(s) | 484 |
| TaaI | ACNGT | 3 cut(s) | 524, 737, 1030 |
| TaiI | ACGT | 3 cut(s) | 418, 714, 798 |
| TaqI | TCGA | 1 cut(s) | 261 |
| TasI | AATT | 7 cut(s) | 197, 381, 580, 668, 690, 714, 767 |
| TatI | WGTACW | 1 cut(s) | 927 |
| TfiI | GAWTC | 7 cut(s) | 361, 395, 440, 680, 862, 899, 952 |
| Tru1I | TTAA | 4 cut(s) | 176, 647, 987, 1016 |
| Tru9I | TTAA | 4 cut(s) | 176, 647, 987, 1016 |
| TscAI | CASTG | 1 cut(s) | 1033 |
| TseFI | GTSAC | 1 cut(s) | 319 |
| Tsp45I | GTSAC | 1 cut(s) | 319 |
| TspDTI | ATGAA | 4 cut(s) | 183, 345, 884, 912 |
| TspGWI | ACGGA | 1 cut(s) | 51 |
| TspRI | CASTG | 1 cut(s) | 1033 |
| Vha464I | CTTAAG | 1 cut(s) | 986 |
| XapI | RAATTY | 2 cut(s) | 668, 767 |
| XbaI | TCTAGA | 1 cut(s) | 850 |
| XceI | RCATGY | 2 cut(s) | 979, 985 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 910 |
| XmnI | GAANNNNTTC | 3 cut(s) | 200, 384, 861 |
| XspI | CTAG | 2 cut(s) | 20, 851 |
| ZraI | GACGTC | 1 cut(s) | 796 |
| Zsp2I | ATGCAT | 2 cut(s) | 354, 565 |