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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 626, 668 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 46 |
| Acc16I | TGCGCA | 1 cut(s) | 1340 |
| AccB1I | GGYRCC | 1 cut(s) | 1191 |
| AccI | GTMKAC | 2 cut(s) | 283, 1183 |
| AciI | CCGC | 1 cut(s) | 798 |
| AclI | AACGTT | 1 cut(s) | 885 |
| AclWI | GGATC | 4 cut(s) | 274, 573, 750, 1547 |
| AcoI | YGGCCR | 1 cut(s) | 736 |
| AcsI | RAATTY | 1 cut(s) | 349 |
| AcyI | GRCGYC | 1 cut(s) | 1192 |
| AfaI | GTAC | 5 cut(s) | 134, 582, 677, 1234, 1371 |
| AflIII | ACRYGT | 1 cut(s) | 334 |
| AjnI | CCWGG | 1 cut(s) | 738 |
| AluBI | AGCT | 8 cut(s) | 401, 522, 715, 812, 880, 927, 1351, 1503 |
| AluI | AGCT | 8 cut(s) | 401, 522, 715, 812, 880, 927, 1351, 1503 |
| Alw21I | GWGCWC | 1 cut(s) | 658 |
| Alw26I | GTCTC | 2 cut(s) | 1298, 1501 |
| AlwI | GGATC | 4 cut(s) | 274, 573, 750, 1547 |
| AoxI | GGCC | 1 cut(s) | 736 |
| ApoI | RAATTY | 1 cut(s) | 349 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 219, 251 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1146 |
| AspLEI | GCGC | 3 cut(s) | 515, 1194, 1341 |
| AspS9I | GGNCC | 1 cut(s) | 556 |
| AsuC2I | CCSGG | 1 cut(s) | 609 |
| AsuHPI | GGTGA | 4 cut(s) | 70, 911, 1093, 1117 |
| AvaII | GGWCC | 1 cut(s) | 556 |
| BalI | TGGCCA | 1 cut(s) | 738 |
| BanI | GGYRCC | 1 cut(s) | 1191 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 459, 491 |
| BauI | CACGAG | 1 cut(s) | 32 |
| BbsI | GAAGAC | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 1 cut(s) | 658 |
| BccI | CCATC | 6 cut(s) | 60, 122, 1019, 1373, 1407, 1550 |
| BceAI | ACGGC | 1 cut(s) | 1114 |
| BciT130I | CCWGG | 1 cut(s) | 740 |
| BcnI | CCSGG | 1 cut(s) | 609 |
| BcoDI | GTCTC | 2 cut(s) | 1298, 1501 |
| BfaI | CTAG | 6 cut(s) | 27, 98, 525, 633, 710, 1154 |
| BfoI | RGCGCY | 2 cut(s) | 516, 1195 |
| BglII | AGATCT | 1 cut(s) | 94 |
| BmcAI | AGTACT | 1 cut(s) | 582 |
| Bme1390I | CCNGG | 2 cut(s) | 609, 740 |
| Bme18I | GGWCC | 1 cut(s) | 556 |
| BmgT120I | GGNCC | 1 cut(s) | 556 |
| BmiI | GGNNCC | 1 cut(s) | 1193 |
| BmrFI | CCNGG | 2 cut(s) | 609, 740 |
| BmsI | GCATC | 3 cut(s) | 565, 1064, 1326 |
| BpiI | GAAGAC | 1 cut(s) | 323 |
| BpuEI | CTTGAG | 2 cut(s) | 216, 1525 |
| BpuMI | CCSGG | 1 cut(s) | 609 |
| BsaBI | GATNNNNATC | 1 cut(s) | 221 |
| BsaHI | GRCGYC | 1 cut(s) | 1192 |
| BsaJI | CCNNGG | 2 cut(s) | 870, 1246 |
| Bse1I | ACTGG | 1 cut(s) | 1380 |
| Bse3DI | GCAATG | 3 cut(s) | 324, 972, 1008 |
| Bse8I | GATNNNNATC | 1 cut(s) | 221 |
| BseBI | CCWGG | 1 cut(s) | 740 |
| BseDI | CCNNGG | 2 cut(s) | 870, 1246 |
| BseGI | GGATG | 4 cut(s) | 71, 1034, 1384, 1388 |
| BseJI | GATNNNNATC | 1 cut(s) | 221 |
| BseMI | GCAATG | 3 cut(s) | 324, 972, 1008 |
| BseMII | CTCAG | 2 cut(s) | 56, 1161 |
| BseNI | ACTGG | 1 cut(s) | 1380 |
| BsgI | GTGCAG | 1 cut(s) | 1263 |
| BshFI | GGCC | 1 cut(s) | 738 |
| BshNI | GGYRCC | 1 cut(s) | 1191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 658 |
| BsiSI | CCGG | 1 cut(s) | 609 |
| BslFI | GGGAC | 2 cut(s) | 732, 1235 |
| BsmAI | GTCTC | 2 cut(s) | 1298, 1501 |
| BsmFI | GGGAC | 2 cut(s) | 732, 1235 |
| BsmI | GAATGC | 2 cut(s) | 769, 1053 |
| BsnI | GGCC | 1 cut(s) | 738 |
| Bsp1286I | GDGCHC | 1 cut(s) | 658 |
| Bsp1407I | TGTACA | 1 cut(s) | 675 |
| Bsp143I | GATC | 8 cut(s) | 94, 266, 403, 456, 565, 595, 742, 1552 |
| BspACI | CCGC | 1 cut(s) | 798 |
| BspANI | GGCC | 1 cut(s) | 738 |
| BspCNI | CTCAG | 2 cut(s) | 55, 1162 |
| BspHI | TCATGA | 1 cut(s) | 906 |
| BspLI | GGNNCC | 1 cut(s) | 1193 |
| BspPI | GGATC | 4 cut(s) | 274, 573, 750, 1547 |
| BspQI | GCTCTTC | 2 cut(s) | 819, 1158 |
| BspT107I | GGYRCC | 1 cut(s) | 1191 |
| BsrDI | GCAATG | 3 cut(s) | 324, 972, 1008 |
| BsrGI | TGTACA | 1 cut(s) | 675 |
| BsrI | ACTGG | 1 cut(s) | 1380 |
| BssECI | CCNNGG | 2 cut(s) | 870, 1246 |
| BssMI | GATC | 8 cut(s) | 94, 266, 403, 456, 565, 595, 742, 1552 |
| BssNAI | GTATAC | 1 cut(s) | 284 |
| BssNI | GRCGYC | 1 cut(s) | 1192 |
| BssSI | CACGAG | 1 cut(s) | 32 |
| BssT1I | CCWWGG | 2 cut(s) | 870, 1246 |
| Bst1107I | GTATAC | 1 cut(s) | 284 |
| Bst2BI | CACGAG | 1 cut(s) | 32 |
| Bst2UI | CCWGG | 1 cut(s) | 740 |
| Bst4CI | ACNGT | 4 cut(s) | 484, 560, 935, 1309 |
| Bst6I | CTCTTC | 2 cut(s) | 819, 1158 |
| BstACI | GRCGYC | 1 cut(s) | 1192 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 89 |
| BstAUI | TGTACA | 1 cut(s) | 675 |
| BstC8I | GCNNGC | 2 cut(s) | 103, 729 |
| BstDEI | CTNAG | 7 cut(s) | 42, 418, 650, 917, 1014, 1170, 1361 |
| BstF5I | GGATG | 4 cut(s) | 71, 1034, 1384, 1388 |
| BstH2I | RGCGCY | 2 cut(s) | 516, 1195 |
| BstHHI | GCGC | 3 cut(s) | 515, 1194, 1341 |
| BstKTI | GATC | 8 cut(s) | 97, 269, 406, 459, 568, 598, 745, 1555 |
| BstMAI | GTCTC | 2 cut(s) | 1298, 1501 |
| BstMBI | GATC | 8 cut(s) | 94, 266, 403, 456, 565, 595, 742, 1552 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 89, 98, 519 |
| BstNI | CCWGG | 1 cut(s) | 740 |
| BstNSI | RCATGY | 4 cut(s) | 304, 338, 731, 1492 |
| BstSCI | CCNGG | 2 cut(s) | 607, 738 |
| BstV2I | GAAGAC | 1 cut(s) | 323 |
| BstX2I | RGATCY | 2 cut(s) | 94, 1552 |
| BstYI | RGATCY | 2 cut(s) | 94, 1552 |
| BstZ17I | GTATAC | 1 cut(s) | 284 |
| BsuRI | GGCC | 1 cut(s) | 738 |
| BtsCI | GGATG | 4 cut(s) | 71, 1034, 1384, 1388 |
| Cac8I | GCNNGC | 2 cut(s) | 103, 729 |
| CciI | TCATGA | 1 cut(s) | 906 |
| CfoI | GCGC | 3 cut(s) | 515, 1194, 1341 |
| Cfr13I | GGNCC | 1 cut(s) | 556 |
| Csp6I | GTAC | 5 cut(s) | 133, 581, 676, 1233, 1370 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 959, 994 |
| CviQI | GTAC | 5 cut(s) | 133, 581, 676, 1233, 1370 |
| DdeI | CTNAG | 7 cut(s) | 42, 418, 650, 917, 1014, 1170, 1361 |
| DinI | GGCGCC | 1 cut(s) | 1193 |
| DpnI | GATC | 8 cut(s) | 96, 268, 405, 458, 567, 597, 744, 1554 |
| DpnII | GATC | 8 cut(s) | 94, 266, 403, 456, 565, 595, 742, 1552 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 46 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 46 |
| EaeI | YGGCCR | 1 cut(s) | 736 |
| Eam1104I | CTCTTC | 2 cut(s) | 819, 1158 |
| EarI | CTCTTC | 2 cut(s) | 819, 1158 |
| EciI | GGCGGA | 1 cut(s) | 813 |
| Eco130I | CCWWGG | 2 cut(s) | 870, 1246 |
| Eco47I | GGWCC | 1 cut(s) | 556 |
| EcoRII | CCWGG | 1 cut(s) | 738 |
| EcoT14I | CCWWGG | 2 cut(s) | 870, 1246 |
| EcoT22I | ATGCAT | 3 cut(s) | 733, 1116, 1327 |
| EgeI | GGCGCC | 1 cut(s) | 1193 |
| EheI | GGCGCC | 1 cut(s) | 1193 |
| ErhI | CCWWGG | 2 cut(s) | 870, 1246 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 522, 554 |
| FaqI | GGGAC | 2 cut(s) | 732, 1235 |
| FblI | GTMKAC | 2 cut(s) | 283, 1183 |
| FokI | GGATG | 4 cut(s) | 78, 1041, 1391, 1395 |
| FspBI | CTAG | 6 cut(s) | 27, 98, 525, 633, 710, 1154 |
| FspI | TGCGCA | 1 cut(s) | 1340 |
| GlaI | GCGC | 3 cut(s) | 514, 1193, 1340 |
| HaeII | RGCGCY | 2 cut(s) | 516, 1195 |
| HaeIII | GGCC | 1 cut(s) | 738 |
| HapII | CCGG | 1 cut(s) | 609 |
| HhaI | GCGC | 3 cut(s) | 515, 1194, 1341 |
| Hin1I | GRCGYC | 1 cut(s) | 1192 |
| Hin6I | GCGC | 3 cut(s) | 513, 1192, 1339 |
| HinP1I | GCGC | 3 cut(s) | 513, 1192, 1339 |
| HinfI | GANTC | 8 cut(s) | 40, 137, 222, 704, 1123, 1157, 1202, 1442 |
| HpaII | CCGG | 1 cut(s) | 609 |
| HphI | GGTGA | 4 cut(s) | 70, 911, 1093, 1117 |
| Hpy166II | GTNNAC | 6 cut(s) | 284, 340, 556, 676, 938, 1184 |
| Hpy188I | TCNGA | 2 cut(s) | 448, 1162 |
| Hpy8I | GTNNAC | 6 cut(s) | 284, 340, 556, 676, 938, 1184 |
| Hpy99I | CGWCG | 1 cut(s) | 52 |
| HpyAV | CCTTC | 1 cut(s) | 55 |
| HpyCH4III | ACNGT | 4 cut(s) | 484, 560, 935, 1309 |
| HpyCH4IV | ACGT | 2 cut(s) | 885, 1177 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 89, 98, 519 |
| HpyF3I | CTNAG | 7 cut(s) | 42, 418, 650, 917, 1014, 1170, 1361 |
| HpySE526I | ACGT | 2 cut(s) | 885, 1177 |
| Hsp92I | GRCGYC | 1 cut(s) | 1192 |
| HspAI | GCGC | 3 cut(s) | 513, 1192, 1339 |
| KasI | GGCGCC | 1 cut(s) | 1191 |
| Kzo9I | GATC | 8 cut(s) | 94, 266, 403, 456, 565, 595, 742, 1552 |
| LguI | GCTCTTC | 2 cut(s) | 819, 1158 |
| LweI | GCATC | 3 cut(s) | 565, 1064, 1326 |
| MaeI | CTAG | 6 cut(s) | 27, 98, 525, 633, 710, 1154 |
| MaeII | ACGT | 2 cut(s) | 885, 1177 |
| MaeIII | GTNAC | 2 cut(s) | 1081, 1127 |
| MalI | GATC | 8 cut(s) | 96, 268, 405, 458, 567, 597, 744, 1554 |
| MboI | GATC | 8 cut(s) | 94, 266, 403, 456, 565, 595, 742, 1552 |
| MboII | GAAGA | 6 cut(s) | 328, 767, 806, 822, 1175, 1530 |
| MfeI | CAATTG | 2 cut(s) | 1044, 1086 |
| MflI | RGATCY | 2 cut(s) | 94, 1552 |
| MhlI | GDGCHC | 1 cut(s) | 658 |
| MlsI | TGGCCA | 1 cut(s) | 738 |
| MluNI | TGGCCA | 1 cut(s) | 738 |
| Mly113I | GGCGCC | 1 cut(s) | 1192 |
| MlyI | GAGTC | 1 cut(s) | 34 |
| MnlI | CCTC | 7 cut(s) | 30, 67, 79, 167, 484, 977, 1212 |
| Mox20I | TGGCCA | 1 cut(s) | 738 |
| Mph1103I | ATGCAT | 3 cut(s) | 733, 1116, 1327 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1146 |
| MscI | TGGCCA | 1 cut(s) | 738 |
| MseI | TTAA | 4 cut(s) | 162, 182, 501, 1409 |
| Msp20I | TGGCCA | 1 cut(s) | 738 |
| MspI | CCGG | 1 cut(s) | 609 |
| MspR9I | CCNGG | 2 cut(s) | 609, 740 |
| MunI | CAATTG | 2 cut(s) | 1044, 1086 |
| Mva1269I | GAATGC | 2 cut(s) | 769, 1053 |
| MvaI | CCWGG | 1 cut(s) | 740 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 89, 98, 519 |
| NarI | GGCGCC | 1 cut(s) | 1192 |
| NciI | CCSGG | 1 cut(s) | 609 |
| NdeII | GATC | 8 cut(s) | 94, 266, 403, 456, 565, 595, 742, 1552 |
| NlaIV | GGNNCC | 1 cut(s) | 1193 |
| NmuCI | GTSAC | 2 cut(s) | 1081, 1127 |
| NsbI | TGCGCA | 1 cut(s) | 1340 |
| NsiI | ATGCAT | 3 cut(s) | 733, 1116, 1327 |
| NspI | RCATGY | 4 cut(s) | 304, 338, 731, 1492 |
| PaeI | GCATGC | 1 cut(s) | 731 |
| PagI | TCATGA | 1 cut(s) | 906 |
| PciI | ACATGT | 1 cut(s) | 334 |
| PciSI | GCTCTTC | 2 cut(s) | 819, 1158 |
| PctI | GAATGC | 2 cut(s) | 769, 1053 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1146 |
| PfeI | GAWTC | 7 cut(s) | 137, 222, 704, 1123, 1157, 1202, 1442 |
| PflFI | GACNNNGTC | 1 cut(s) | 43 |
| PfoI | TCCNGGA | 1 cut(s) | 607 |
| PleI | GAGTC | 1 cut(s) | 34 |
| PluTI | GGCGCC | 1 cut(s) | 1195 |
| PpsI | GAGTC | 1 cut(s) | 34 |
| PscI | ACATGT | 1 cut(s) | 334 |
| PsiI | TTATAA | 2 cut(s) | 626, 668 |
| Psp1406I | AACGTT | 1 cut(s) | 885 |
| Psp6I | CCWGG | 1 cut(s) | 738 |
| PspGI | CCWGG | 1 cut(s) | 738 |
| PspN4I | GGNNCC | 1 cut(s) | 1193 |
| PspPI | GGNCC | 1 cut(s) | 556 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 989, 1021 |
| PsuI | RGATCY | 2 cut(s) | 94, 1552 |
| PsyI | GACNNNGTC | 1 cut(s) | 43 |
| RsaI | GTAC | 5 cut(s) | 134, 582, 677, 1234, 1371 |
| RsaNI | GTAC | 5 cut(s) | 133, 581, 676, 1233, 1370 |
| SapI | GCTCTTC | 2 cut(s) | 819, 1158 |
| SaqAI | TTAA | 4 cut(s) | 162, 182, 501, 1409 |
| Sau3AI | GATC | 8 cut(s) | 94, 266, 403, 456, 565, 595, 742, 1552 |
| Sau96I | GGNCC | 1 cut(s) | 556 |
| ScaI | AGTACT | 1 cut(s) | 582 |
| SchI | GAGTC | 1 cut(s) | 34 |
| ScrFI | CCNGG | 2 cut(s) | 609, 740 |
| SduI | GDGCHC | 1 cut(s) | 658 |
| SfaNI | GCATC | 3 cut(s) | 565, 1064, 1326 |
| SfoI | GGCGCC | 1 cut(s) | 1193 |
| SinI | GGWCC | 1 cut(s) | 556 |
| SmlI | CTYRAG | 2 cut(s) | 231, 1504 |
| SmoI | CTYRAG | 2 cut(s) | 231, 1504 |
| SphI | GCATGC | 1 cut(s) | 731 |
| SsiI | CCGC | 1 cut(s) | 798 |
| SspDI | GGCGCC | 1 cut(s) | 1191 |
| SspMI | CTAG | 6 cut(s) | 27, 98, 525, 633, 710, 1154 |
| StyD4I | CCNGG | 2 cut(s) | 607, 738 |
| StyI | CCWWGG | 2 cut(s) | 870, 1246 |
| TaaI | ACNGT | 4 cut(s) | 484, 560, 935, 1309 |
| TaiI | ACGT | 2 cut(s) | 888, 1180 |
| TaqI | TCGA | 2 cut(s) | 50, 406 |
| TaqII | GACCGA | 1 cut(s) | 969 |
| TatI | WGTACW | 2 cut(s) | 580, 675 |
| TfiI | GAWTC | 7 cut(s) | 137, 222, 704, 1123, 1157, 1202, 1442 |
| Tru1I | TTAA | 4 cut(s) | 162, 182, 501, 1409 |
| Tru9I | TTAA | 4 cut(s) | 162, 182, 501, 1409 |
| TseFI | GTSAC | 2 cut(s) | 1081, 1127 |
| Tsp45I | GTSAC | 2 cut(s) | 1081, 1127 |
| TspDTI | ATGAA | 6 cut(s) | 367, 408, 605, 717, 779, 923 |
| Tth111I | GACNNNGTC | 1 cut(s) | 43 |
| VpaK11BI | GGWCC | 1 cut(s) | 556 |
| XapI | RAATTY | 1 cut(s) | 349 |
| XbaI | TCTAGA | 2 cut(s) | 524, 1153 |
| XceI | RCATGY | 4 cut(s) | 304, 338, 731, 1492 |
| XmiI | GTMKAC | 2 cut(s) | 283, 1183 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1146 |
| XspI | CTAG | 6 cut(s) | 27, 98, 525, 633, 710, 1154 |
| ZrmI | AGTACT | 1 cut(s) | 582 |
| Zsp2I | ATGCAT | 3 cut(s) | 733, 1116, 1327 |