RLG00000028654

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
25674716 .. 25678122
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028654

Sequence Viewer

Length: 1950 bp
ATGGATTCACCAGTAGACCCAGAGGCAGGGGTAGAGCCCGAGCTTGTGACGATCCTTCGATGCAAGAAGAGGTCCGGTCAGTTCGTTTTGCCGATCTACTACGACGTCAGCCCATCCCAGGTGAGGAAGAAGACGGGGAGTCTTGCAAAGGCGTTCATCACACACCAGAAGAATCAAACAGCGGAAAAGCTGATTCTGTGGAAGGAAGCACTTTCAGAAGTTGCGGCTTTAGCAGGCATGGTGTTAAAGGATCAAGTTGACGGTCAAAATTTATTGAAAATTTTAGATGCATGTGATTTCTGCACAACCGTTGGCATTCAAAATCTCATTGATAGATATCTGGTTAGAATTGAAGAATGTAATAAGGTGAGTATGCATCAAATGATTTGTGACATGGGAAGAGAAATGGTTCGTCTAGAATCAAAAGATCCTAAGAAACGTAGTAGGCTATGGCATCACAAGGACTCTCTTAATGCATTAAGAGAAAAGACTGGTTCTAATGCAATTGAAGGCCTTGTCCTGAACATGCCTGTGAACCCTGCACATGGTCCTTCAAGAAATTCAGATATGGTGGTCTTGGATACCAATGCATTTTCAATGATGAACAATGTCAGATTCCTTCATCTTGGTCATGTACAACTCAATGGAAGTTATGAAAAATTTCCGAAAGGATTGAGATGGTTGTGTTGGCGCGAATGTCCTTTGAATTTAATACCGAGTGATTTTCCTATGGAGATGATGGTTGTTATTGAAATGTCCTGTAGTAGATTGAGACAAGTGTGGAAGGGAGCAAAGATCTTTGATCTCAGCCATTCCTCAAACCTTACTGAAACTGGTGACTTCTCATTGGTCCAGAATCTGGAGAGACTTACACTTGAACATTGTATAAGCTTAGTTGATCTAATCACTATCCCTGGGCAGGTAAATTCATGGCCAAGATTAAGTGTAGATGGTTTTTGGGGTTCGTTTTCTGGCTCCATTGTTGAGTTAAATCTTGGAAGCTGCAATCTTTCTGATGATGCTTTTCCTAGTGATTTTGGTAACTTATCTTCATTGGAGAGTTTGGATCTCAGCTACAATAACTTTTGTACCTTGCCAGATTCAATCAGAGGCCTTTGTAAACTCAAGACGCTTAATCTTCAATCCTGTAGAAGTCTCATGTCAATTACAGGTCTACCACGAGTAAGTGATCTACTGAGCGCAGACCATTGTGTATCCTCGGAAAAAATAACATTTCAATCACTTTCATGCATACCGAAGAGAGTATCCATAAATGGTGACTCCAAACTAGTTGAGATTCAGCACTGGTACCAGCTAAAACCCATTGGAACAGTTGATGTAGAAATGATCAGGCTTTTGGGTTTGTCCAACTTGGAATCCATGGAACCCATTCTGATGCACACCGCAGATGCAAACTCCCCGTCGGATGGGGAATCCATGGAACCCATTCGCATCCAGGGACATAATGAATATGGTATCTTCAGCGCATTCTTTCCGGGAAACGGAAATGAGGTAAAAGAGTTCGGTGTCCAAGTGGTGCATGAGGAAGGAGAGAAGATGACTACGCAACAGTACAGCAGCAATAGTAGAGATCCTAGTTATGATGATCCCGATGCTTGTGGTGTTAATGAGGTGATTGGTAATAGTGGTGGAGTTTTGTCAGAGTTATATCAGGTCAGGCCAGGGACATACTTCCTCTGCGGTGGACCCTTTTTAGAAAATAATAGACACGCATATAACAGATGGAAAAAGGATCGTTGCCTCAGTGGCATCATAGGAGAGTATGATGAAGAAACAGACAAAGAAGAAAGGAAACAGGGGGATAGGACACTAGCAGCAACAGAAGAAGCTGAACCAGAAAGAGGCGGCAGCAATACATTCTTTGGTTGCAAGGTTCTCATTCTGGCTGCTGTCTTTTCTTTTTCTGTCTTTGTGGAAGTCATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

650

Amino Acids

72.52

Weight (kDa)

5.32

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 14 - 93 1.6e-15 TIR domain
WHD_ROQ1 PF23282 90 - 140 3.5e-10 Disease resistance protein Roq1-like, winged-helix domain
LRR_8 PF13855 329 - 384 1.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
Acc36I ACCTGC 1 cut(s) 910
Acc65I GGTACC 1 cut(s) 1308
AccB1I GGYRCC 1 cut(s) 1308
AccB7I CCANNNNNTGG 1 cut(s) 859
AccI GTMKAC 2 cut(s) 15, 1174
AccII CGCG 1 cut(s) 693
AciI CCGC 5 cut(s) 182, 224, 1404, 1701, 1866
AclWI GGATC 7 cut(s) 46, 258, 422, 1074, 1586, 1601, 1761
AcoI YGGCCR 1 cut(s) 932
AcsI RAATTY 6 cut(s) 268, 279, 559, 659, 706, 925
AcuI CTGAAG 1 cut(s) 1465
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 4 cut(s) 636, 1090, 1310, 1574
AfiI CCNNNNNNNGG 9 cut(s) 26, 118, 123, 545, 859, 919, 1427, 1502, 1862
AhdI GACNNNNNGTC 1 cut(s) 138
AhlI ACTAGT 1 cut(s) 1288
AjnI CCWGG 4 cut(s) 117, 913, 1455, 1681
AluBI AGCT 7 cut(s) 43, 190, 891, 1002, 1074, 1315, 1850
AluI AGCT 7 cut(s) 43, 190, 891, 1002, 1074, 1315, 1850
Alw26I GTCTC 3 cut(s) 766, 859, 1160
AlwI GGATC 7 cut(s) 46, 258, 422, 1074, 1586, 1601, 1761
AlwNI CAGNNNCTG 1 cut(s) 859
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 4 cut(s) 511, 932, 1111, 1679
ApeKI GCWGC 5 cut(s) 1002, 1578, 1835, 1869, 1907
ApoI RAATTY 6 cut(s) 268, 279, 559, 659, 706, 925
ArsI GACNNNNNNTTYG 2 cut(s) 1406, 1438
Asp700I GAANNNNTTC 4 cut(s) 408, 660, 1389, 1446
Asp718I GGTACC 1 cut(s) 1308
AspLEI GCGC 3 cut(s) 693, 1202, 1487
AspS9I GGNCC 4 cut(s) 72, 548, 850, 1706
AsuC2I CCSGG 1 cut(s) 1497
AsuHPI GGTGA 5 cut(s) 133, 379, 848, 1289, 1645
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 4 cut(s) 72, 548, 850, 1706
BaeI ACNNNNGTAYC 2 cut(s) 1072, 1105
BalI TGGCCA 1 cut(s) 934
BanI GGYRCC 1 cut(s) 1308
BanII GRGCYC 1 cut(s) 39
BarI GAAGNNNNNNTAC 2 cut(s) 1033, 1065
BauI CACGAG 1 cut(s) 1179
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 5 cut(s) 989, 1590, 1847, 1881, 1894
BccI CCATC 6 cut(s) 121, 672, 733, 944, 1421, 1737
BciT130I CCWGG 4 cut(s) 119, 915, 1457, 1683
BciVI GTATCC 3 cut(s) 574, 1225, 1276
BclI TGATCA 1 cut(s) 1347
BcnI CCSGG 1 cut(s) 1497
BcoDI GTCTC 3 cut(s) 766, 859, 1160
BcuI ACTAGT 1 cut(s) 1288
BfaI CTAG 5 cut(s) 416, 1029, 1289, 1596, 1832
BfmI CTRYAG 2 cut(s) 760, 1147
BfuAI ACCTGC 1 cut(s) 910
BfuI GTATCC 3 cut(s) 574, 1225, 1276
BglI GCCNNNNNGGC 1 cut(s) 1767
BglII AGATCT 1 cut(s) 795
BisI GCNGC 7 cut(s) 225, 1003, 1579, 1836, 1867, 1870, 1908
BlsI GCNGC 7 cut(s) 226, 1004, 1580, 1837, 1868, 1871, 1909
Bme1390I CCNGG 5 cut(s) 119, 915, 1457, 1497, 1683
Bme18I GGWCC 4 cut(s) 72, 548, 850, 1706
BmeRI GACNNNNNGTC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 4 cut(s) 72, 548, 850, 1706
BmiI GGNNCC 5 cut(s) 976, 1310, 1386, 1443, 1708
BmrFI CCNGG 5 cut(s) 119, 915, 1457, 1497, 1683
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 881
BpuEI CTTGAG 1 cut(s) 1109
BpuMI CCSGG 1 cut(s) 1497
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 8 cut(s) 117, 913, 914, 1218, 1380, 1437, 1456, 1682
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 9 cut(s) 26, 118, 123, 545, 859, 919, 1427, 1502, 1862
Bse1I ACTGG 4 cut(s) 11, 496, 838, 1310
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 4 cut(s) 119, 915, 1457, 1683
BseDI CCNNGG 8 cut(s) 117, 913, 914, 1218, 1380, 1437, 1456, 1682
BseGI GGATG 3 cut(s) 113, 1432, 1452
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 9 cut(s) 26, 118, 123, 545, 859, 919, 1427, 1502, 1862
BseMII CTCAG 4 cut(s) 820, 1084, 1187, 1777
BseNI ACTGG 4 cut(s) 11, 496, 838, 1310
BseXI GCAGC 5 cut(s) 989, 1590, 1847, 1881, 1894
BsgI GTGCAG 2 cut(s) 286, 525
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 4 cut(s) 513, 934, 1113, 1681
BshNI GGYRCC 1 cut(s) 1308
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 2 cut(s) 75, 1496
BslFI GGGAC 2 cut(s) 1473, 1699
BslI CCNNNNNNNGG 9 cut(s) 26, 118, 123, 545, 859, 919, 1427, 1502, 1862
BsmAI GTCTC 3 cut(s) 766, 859, 1160
BsmFI GGGAC 2 cut(s) 1473, 1699
BsmI GAATGC 2 cut(s) 315, 1487
BsnI GGCC 4 cut(s) 513, 934, 1113, 1681
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 39
Bsp1407I TGTACA 1 cut(s) 634
Bsp19I CCATGG 2 cut(s) 1380, 1437
BspACI CCGC 5 cut(s) 182, 224, 1404, 1701, 1866
BspANI GGCC 4 cut(s) 513, 934, 1113, 1681
BspCNI CTCAG 4 cut(s) 819, 1083, 1188, 1776
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 5 cut(s) 976, 1310, 1386, 1443, 1708
BspMI ACCTGC 1 cut(s) 910
BspPI GGATC 7 cut(s) 46, 258, 422, 1074, 1586, 1601, 1761
BspT107I GGYRCC 1 cut(s) 1308
BsrGI TGTACA 1 cut(s) 634
BsrI ACTGG 4 cut(s) 11, 496, 838, 1310
BssECI CCNNGG 8 cut(s) 117, 913, 914, 1218, 1380, 1437, 1456, 1682
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 1179
BssT1I CCWWGG 2 cut(s) 1380, 1437
Bst2BI CACGAG 1 cut(s) 1179
Bst2UI CCWGG 4 cut(s) 119, 915, 1457, 1683
Bst4CI ACNGT 4 cut(s) 263, 310, 1333, 1572
Bst6I CTCTTC 3 cut(s) 62, 394, 1253
BstACI GRCGYC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 6 cut(s) 432, 806, 892, 1070, 1196, 1763
BstDSI CCRYGG 2 cut(s) 1380, 1437
BstF5I GGATG 3 cut(s) 113, 1432, 1452
BstFNI CGCG 1 cut(s) 693
BstHHI GCGC 3 cut(s) 693, 1202, 1487
BstMAI GTCTC 3 cut(s) 766, 859, 1160
BstMWI GCNNNNNNNGC 2 cut(s) 230, 1767
BstNI CCWGG 4 cut(s) 119, 915, 1457, 1683
BstNSI RCATGY 2 cut(s) 294, 529
BstSCI CCNGG 5 cut(s) 117, 913, 1455, 1495, 1681
BstSFI CTRYAG 2 cut(s) 760, 1147
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 5 cut(s) 989, 1590, 1847, 1881, 1894
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 4 cut(s) 427, 795, 1066, 1591
BstYI RGATCY 4 cut(s) 427, 795, 1066, 1591
BsuI GTATCC 3 cut(s) 574, 1225, 1276
BsuRI GGCC 4 cut(s) 513, 934, 1113, 1681
BtgI CCRYGG 2 cut(s) 1380, 1437
BtsCI GGATG 3 cut(s) 113, 1432, 1452
BtsIMutI CAGTG 2 cut(s) 1303, 1771
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 859
CfoI GCGC 3 cut(s) 693, 1202, 1487
Cfr13I GGNCC 4 cut(s) 72, 548, 850, 1706
CseI GACGC 1 cut(s) 1138
Csp6I GTAC 4 cut(s) 635, 1089, 1309, 1573
CviQI GTAC 4 cut(s) 635, 1089, 1309, 1573
DdeI CTNAG 6 cut(s) 432, 806, 892, 1070, 1196, 1763
DriI GACNNNNNGTC 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 932
Eam1104I CTCTTC 3 cut(s) 62, 394, 1253
Eam1105I GACNNNNNGTC 1 cut(s) 138
EarI CTCTTC 3 cut(s) 62, 394, 1253
Eco130I CCWWGG 2 cut(s) 1380, 1437
Eco147I AGGCCT 2 cut(s) 513, 1113
Eco24I GRGCYC 1 cut(s) 39
Eco32I GATATC 1 cut(s) 338
Eco47I GGWCC 4 cut(s) 72, 548, 850, 1706
Eco57I CTGAAG 1 cut(s) 1465
Eco88I CYCGRG 1 cut(s) 38
EcoRII CCWGG 4 cut(s) 117, 913, 1455, 1681
EcoRV GATATC 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 1380, 1437
EcoT22I ATGCAT 5 cut(s) 292, 378, 478, 592, 1253
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 2 cut(s) 1380, 1437
FaqI GGGAC 2 cut(s) 1473, 1699
FbaI TGATCA 1 cut(s) 1347
FblI GTMKAC 2 cut(s) 15, 1174
Fnu4HI GCNGC 7 cut(s) 225, 1003, 1579, 1836, 1867, 1870, 1908
FokI GGATG 3 cut(s) 100, 1439, 1439
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 7 cut(s) 225, 1003, 1579, 1836, 1867, 1870, 1908
FspBI CTAG 5 cut(s) 416, 1029, 1289, 1596, 1832
GlaI GCGC 3 cut(s) 692, 1201, 1486
GluI GCNGC 7 cut(s) 225, 1003, 1579, 1836, 1867, 1870, 1908
GsuI CTGGAG 1 cut(s) 881
HaeIII GGCC 4 cut(s) 513, 934, 1113, 1681
HapII CCGG 2 cut(s) 75, 1496
HgaI GACGC 1 cut(s) 1138
HhaI GCGC 3 cut(s) 693, 1202, 1487
Hin1I GRCGYC 1 cut(s) 105
Hin6I GCGC 3 cut(s) 691, 1200, 1485
HinP1I GCGC 3 cut(s) 691, 1200, 1485
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 889
HpaII CCGG 2 cut(s) 75, 1496
HphI GGTGA 5 cut(s) 133, 379, 848, 1289, 1645
Hpy166II GTNNAC 6 cut(s) 16, 259, 535, 1121, 1175, 1706
Hpy188III TCNNGA 7 cut(s) 416, 520, 555, 853, 860, 1126, 1610
Hpy8I GTNNAC 6 cut(s) 16, 259, 535, 1121, 1175, 1706
Hpy99I CGWCG 2 cut(s) 107, 1426
HpyAV CCTTC 7 cut(s) 65, 196, 503, 561, 629, 778, 1541
HpyCH4III ACNGT 4 cut(s) 263, 310, 1333, 1572
HpyCH4IV ACGT 2 cut(s) 105, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 1767
HpyF3I CTNAG 6 cut(s) 432, 806, 892, 1070, 1196, 1763
HpySE526I ACGT 2 cut(s) 105, 439
Hsp92I GRCGYC 1 cut(s) 105
HspAI GCGC 3 cut(s) 691, 1200, 1485
KpnI GGTACC 1 cut(s) 1312
Ksp22I TGATCA 1 cut(s) 1347
LmnI GCTCC 2 cut(s) 788, 980
Lsp1109I GCAGC 5 cut(s) 989, 1590, 1847, 1881, 1894
MaeI CTAG 5 cut(s) 416, 1029, 1289, 1596, 1832
MaeII ACGT 2 cut(s) 105, 439
MaeIII GTNAC 5 cut(s) 46, 389, 836, 1040, 1277
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 4 cut(s) 427, 795, 1066, 1591
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 934
MluCI AATT 9 cut(s) 268, 279, 348, 504, 559, 659, 706, 925, 1164
MluNI TGGCCA 1 cut(s) 934
MlyI GAGTC 3 cut(s) 148, 458, 1274
MmeI TCCRAC 2 cut(s) 1392, 1404
Mox20I TGGCCA 1 cut(s) 934
Mph1103I ATGCAT 5 cut(s) 292, 378, 478, 592, 1253
MroXI GAANNNNTTC 4 cut(s) 408, 660, 1389, 1446
MscI TGGCCA 1 cut(s) 934
MseI TTAA 8 cut(s) 245, 471, 479, 710, 941, 989, 1134, 1626
MslI CAYNNNNRTG 3 cut(s) 530, 1246, 1394
Msp20I TGGCCA 1 cut(s) 934
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 2 cut(s) 75, 1496
MspR9I CCNGG 5 cut(s) 119, 915, 1457, 1497, 1683
MunI CAATTG 1 cut(s) 504
Mva1269I GAATGC 2 cut(s) 315, 1487
MvaI CCWGG 4 cut(s) 119, 915, 1457, 1683
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 2 cut(s) 230, 1767
NciI CCSGG 1 cut(s) 1497
NcoI CCATGG 2 cut(s) 1380, 1437
NlaIV GGNNCC 5 cut(s) 976, 1310, 1386, 1443, 1708
NmuCI GTSAC 4 cut(s) 46, 389, 836, 1277
NsiI ATGCAT 5 cut(s) 292, 378, 478, 592, 1253
NspI RCATGY 2 cut(s) 294, 529
PasI CCCWGGG 1 cut(s) 914
PceI AGGCCT 2 cut(s) 513, 1113
PctI GAATGC 2 cut(s) 315, 1487
PdmI GAANNNNTTC 4 cut(s) 408, 660, 1389, 1446
PflMI CCANNNNNTGG 1 cut(s) 859
PfoI TCCNGGA 1 cut(s) 1495
PkrI GCNGC 7 cut(s) 226, 1004, 1580, 1837, 1868, 1871, 1909
PleI GAGTC 3 cut(s) 147, 458, 1274
PpsI GAGTC 3 cut(s) 147, 458, 1274
Psp6I CCWGG 4 cut(s) 117, 913, 1455, 1681
PspGI CCWGG 4 cut(s) 117, 913, 1455, 1681
PspN4I GGNNCC 5 cut(s) 976, 1310, 1386, 1443, 1708
PspPI GGNCC 4 cut(s) 72, 548, 850, 1706
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 4 cut(s) 427, 795, 1066, 1591
RsaI GTAC 4 cut(s) 636, 1090, 1310, 1574
RsaNI GTAC 4 cut(s) 635, 1089, 1309, 1573
RseI CAYNNNNRTG 3 cut(s) 530, 1246, 1394
SaqAI TTAA 8 cut(s) 245, 471, 479, 710, 941, 989, 1134, 1626
SatI GCNGC 7 cut(s) 225, 1003, 1579, 1836, 1867, 1870, 1908
Sau96I GGNCC 4 cut(s) 72, 548, 850, 1706
SchI GAGTC 3 cut(s) 148, 458, 1274
ScrFI CCNGG 5 cut(s) 119, 915, 1457, 1497, 1683
SduI GDGCHC 1 cut(s) 39
SfcI CTRYAG 2 cut(s) 760, 1147
SinI GGWCC 4 cut(s) 72, 548, 850, 1706
SmiMI CAYNNNNRTG 3 cut(s) 530, 1246, 1394
SmlI CTYRAG 1 cut(s) 1124
SmoI CTYRAG 1 cut(s) 1124
SpeI ACTAGT 1 cut(s) 1288
Sse9I AATT 9 cut(s) 268, 279, 348, 504, 559, 659, 706, 925, 1164
SseBI AGGCCT 2 cut(s) 513, 1113
SsiI CCGC 5 cut(s) 182, 224, 1404, 1701, 1866
SspMI CTAG 5 cut(s) 416, 1029, 1289, 1596, 1832
StuI AGGCCT 2 cut(s) 513, 1113
StyD4I CCNGG 5 cut(s) 117, 913, 1455, 1495, 1681
StyI CCWWGG 2 cut(s) 1380, 1437
TaaI ACNGT 4 cut(s) 263, 310, 1333, 1572
TaiI ACGT 2 cut(s) 108, 442
TaqI TCGA 1 cut(s) 58
TasI AATT 9 cut(s) 268, 279, 348, 504, 559, 659, 706, 925, 1164
TatI WGTACW 2 cut(s) 634, 1572
TauI GCSGC 2 cut(s) 227, 1869
Tru1I TTAA 8 cut(s) 245, 471, 479, 710, 941, 989, 1134, 1626
Tru9I TTAA 8 cut(s) 245, 471, 479, 710, 941, 989, 1134, 1626
TscAI CASTG 2 cut(s) 1310, 1771
TseFI GTSAC 4 cut(s) 46, 389, 836, 1277
TseI GCWGC 5 cut(s) 1002, 1578, 1835, 1869, 1907
Tsp45I GTSAC 4 cut(s) 46, 389, 836, 1277
TspDTI ATGAA 9 cut(s) 145, 611, 617, 669, 918, 1041, 1236, 1482, 1803
TspGWI ACGGA 1 cut(s) 1518
TspRI CASTG 2 cut(s) 1310, 1771
Van91I CCANNNNNTGG 1 cut(s) 859
VpaK11BI GGWCC 4 cut(s) 72, 548, 850, 1706
XapI RAATTY 6 cut(s) 268, 279, 559, 659, 706, 925
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 2 cut(s) 294, 529
XmiI GTMKAC 2 cut(s) 15, 1174
XmnI GAANNNNTTC 4 cut(s) 408, 660, 1389, 1446
XspI CTAG 5 cut(s) 416, 1029, 1289, 1596, 1832
ZraI GACGTC 1 cut(s) 106
Zsp2I ATGCAT 5 cut(s) 292, 378, 478, 592, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.